Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.49536 * 2 1 4 4 C 1.53195 * 109.49367 * 239.90790 * 2 1 3 5 5 N 1.46930 * 108.77335 * 185.41462 * 4 2 1 6 6 C 1.36936 * 120.62952 * 233.58506 * 5 4 2 7 7 H 1.07996 * 120.00173 * 36.55792 * 6 5 4 8 8 C 1.38810 * 119.99855 * 216.55591 * 6 5 4 9 9 N 1.31621 * 120.00105 * 12.26336 * 8 6 5 10 10 Si 1.86801 * 119.99931 * 192.26162 * 8 6 5 11 11 H 1.48503 * 109.47080 * 60.00316 * 10 8 6 12 12 H 1.48501 * 109.47062 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47424 * 300.00118 * 10 8 6 14 14 C 1.46929 * 118.73836 * 53.60636 * 5 4 2 15 15 C 1.53195 * 108.77590 * 306.39102 * 14 5 4 16 16 C 1.53034 * 109.49521 * 120.06956 * 2 1 3 17 17 H 1.09000 * 109.45034 * 301.32466 * 16 2 1 18 18 N 1.46504 * 109.46308 * 61.29620 * 16 2 1 19 19 C 1.34774 * 119.99791 * 205.06674 * 18 16 2 20 20 O 1.21765 * 120.00091 * 355.47872 * 19 18 16 21 21 C 1.46261 * 120.00022 * 175.47987 * 19 18 16 22 22 C 1.33478 * 122.20974 * 184.85142 * 21 19 18 23 23 S 1.75718 * 109.85613 * 180.02562 * 22 21 19 24 24 C 1.75942 * 91.05755 * 359.97438 * 23 22 21 25 25 C 1.36290 * 142.80557 * 179.97438 * 24 23 22 26 26 N 1.33745 * 107.81886 * 179.31980 * 25 24 23 27 27 C 1.30363 * 109.45646 * 0.58497 * 26 25 24 28 28 N 1.35927 * 109.81830 * 359.73595 * 24 23 22 29 29 H 1.09001 * 109.47066 * 299.93231 * 1 2 3 30 30 H 1.09004 * 109.47151 * 59.93032 * 1 2 3 31 31 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.58732 * 305.19595 * 4 2 1 33 33 H 1.08993 * 109.59020 * 65.63024 * 4 2 1 34 34 H 0.97000 * 120.00335 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.58853 * 186.60543 * 14 5 4 36 36 H 1.08994 * 109.58856 * 66.17891 * 14 5 4 37 37 H 1.08995 * 109.49799 * 294.68967 * 15 14 5 38 38 H 1.08997 * 109.49974 * 174.58730 * 15 14 5 39 39 H 0.96990 * 119.99727 * 25.06560 * 18 16 2 40 40 H 1.07992 * 125.07117 * 359.97438 * 22 21 19 41 41 H 1.07998 * 126.08695 * 0.02562 * 25 24 23 42 42 H 1.07999 * 125.56808 * 179.48271 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7241 -1.2495 5 7 3.5046 -0.8294 -1.1695 6 6 4.2935 -0.3799 -2.1945 7 1 4.0146 0.5090 -2.7408 8 6 5.4519 -1.0666 -2.5313 9 7 5.6709 -2.2682 -2.0407 10 14 6.6998 -0.2855 -3.6811 11 1 7.1945 0.9824 -3.0871 12 1 7.8399 -1.2161 -3.8801 13 1 6.0577 -0.0017 -4.9896 14 6 4.1053 -1.4268 0.0310 15 6 3.5709 -0.6948 1.2661 16 6 2.0408 -0.7228 1.2485 17 1 1.6582 -0.2238 2.1388 18 7 1.5783 -2.1128 1.2312 19 6 1.4489 -2.7943 2.3868 20 8 1.7940 -2.2834 3.4368 21 6 0.8939 -4.1475 2.3795 22 6 0.6580 -4.8257 3.5047 23 16 -0.0039 -6.4075 3.1205 24 6 0.0745 -6.0579 1.3979 25 6 -0.1879 -6.5872 0.1697 26 7 0.1361 -5.6705 -0.7487 27 6 0.5973 -4.6053 -0.1552 28 7 0.5724 -4.8082 1.2035 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6052 -1.7220 -1.2977 33 1 1.7638 -0.1584 -2.1389 34 1 6.4801 -2.7482 -2.2763 35 1 5.1896 -1.3247 -0.0135 36 1 3.8375 -2.4818 0.0873 37 1 3.9159 0.3391 1.2539 38 1 3.9335 -1.1892 2.1673 39 1 1.3653 -2.5426 0.3882 40 1 0.8465 -4.4576 4.5023 41 1 -0.5964 -7.5675 -0.0265 42 1 0.9428 -3.7100 -0.6505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943289320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = 69.862305 kcal Electronic energy + Delta-G solvation = -27517.206954 eV Core-core repulsion = 23818.421115 eV Total energy + Delta-G solvation = -3698.785839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.91664 -41.40508 -39.44788 -37.30974 -36.09220 -34.15391 -33.00709 -31.97718 -31.57651 -30.53500 -27.50724 -27.35578 -25.90999 -24.04607 -23.37834 -22.98094 -22.62146 -21.66629 -20.42103 -19.79416 -18.73106 -17.88396 -17.43108 -16.99890 -16.83703 -16.46389 -16.21165 -16.00128 -15.72928 -15.48681 -15.30014 -14.84974 -14.70683 -14.65356 -14.50012 -14.25814 -13.61182 -13.21449 -13.09991 -12.93214 -12.74143 -12.63763 -12.60777 -12.43558 -12.27364 -12.04182 -11.76047 -11.57326 -11.55541 -11.43180 -11.35554 -11.14411 -10.61776 -10.57282 -10.21041 -8.58983 -8.53787 -7.89668 -5.45745 -0.58409 -0.03837 0.33621 0.55006 1.26706 1.46260 1.47724 1.54209 1.71460 1.93919 1.98878 2.48654 3.10695 3.26855 3.37858 3.61336 3.68211 3.72070 3.97499 3.99249 4.05447 4.23015 4.33226 4.36784 4.52535 4.59081 4.66087 4.70243 4.72682 4.91250 4.95609 5.01893 5.08990 5.22951 5.26301 5.34089 5.36934 5.44457 5.62314 5.65448 5.71151 6.22064 6.40424 6.61845 6.81544 7.13736 7.80500 8.36782 9.15231 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.003904 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.021743 B = 7170.571401 C = 7841.107073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 H 0.088 0.912 4 C 0.149 3.851 5 N -0.603 5.603 6 C -0.270 4.270 7 H 0.066 0.934 8 C -0.038 4.038 9 N -0.931 5.931 10 Si 0.964 3.036 11 H -0.277 1.277 12 H -0.297 1.297 13 H -0.273 1.273 14 C 0.192 3.808 15 C -0.144 4.144 16 C 0.165 3.835 17 H 0.091 0.909 18 N -0.703 5.703 19 C 0.579 3.421 20 O -0.548 6.548 21 C -0.010 4.010 22 C -0.120 4.120 23 S 0.256 5.744 24 C -0.118 4.118 25 C 0.014 3.986 26 N -0.466 5.466 27 C 0.173 3.827 28 N -0.397 5.397 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.009 0.991 33 H 0.062 0.938 34 H 0.249 0.751 35 H 0.036 0.964 36 H -0.006 1.006 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.398 0.602 40 H 0.225 0.775 41 H 0.213 0.787 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.945 -5.332 11.736 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 H 0.107 0.893 4 C 0.023 3.977 5 N -0.326 5.326 6 C -0.400 4.400 7 H 0.083 0.917 8 C -0.235 4.235 9 N -0.576 5.576 10 Si 0.792 3.208 11 H -0.203 1.203 12 H -0.224 1.224 13 H -0.198 1.198 14 C 0.066 3.934 15 C -0.184 4.184 16 C 0.061 3.939 17 H 0.109 0.891 18 N -0.356 5.356 19 C 0.364 3.636 20 O -0.427 6.427 21 C -0.124 4.124 22 C -0.261 4.261 23 S 0.517 5.483 24 C -0.343 4.343 25 C -0.144 4.144 26 N -0.181 5.181 27 C -0.109 4.109 28 N -0.078 5.078 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.237 0.763 40 H 0.242 0.758 41 H 0.230 0.770 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.052 -6.168 12.386 20.446 hybrid contribution 1.778 1.247 -1.311 2.537 sum -13.274 -4.920 11.076 17.974 Atomic orbital electron populations 1.21720 0.92853 1.01777 1.02939 1.21849 0.96796 1.00194 0.94024 0.89328 1.21109 0.83808 0.96335 0.96428 1.44129 1.00746 1.71701 1.16032 1.19379 1.04632 1.05380 1.10630 0.91685 1.25990 1.02377 0.95187 0.99947 1.70141 1.26833 1.12188 1.48397 0.85411 0.78494 0.77498 0.79415 1.20272 1.22355 1.19822 1.20307 0.96267 0.92364 0.84430 1.22410 0.96005 1.01582 0.98363 1.20965 0.93351 0.80191 0.99392 0.89080 1.46290 1.66018 1.14789 1.08459 1.17138 0.78284 0.83723 0.84501 1.90847 1.51268 1.69204 1.31431 1.19100 1.12136 0.96295 0.84827 1.26265 0.99313 0.98076 1.02445 1.84252 1.66222 1.10262 0.87564 1.25106 1.14372 0.91249 1.03550 1.22381 1.06807 1.01233 0.83960 1.70158 1.14807 1.00711 1.32396 1.25241 1.07622 1.01391 0.76640 1.44207 1.44248 1.12810 1.06501 0.91438 0.91054 0.93357 0.97285 0.91958 0.94201 0.94508 0.98795 0.91046 0.92846 0.76282 0.75806 0.77043 0.77775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.05 71.98 0.65 -2.46 16 2 C -0.11 -3.23 2.67 -10.72 -0.03 -3.26 16 3 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.15 5.62 5.50 86.36 0.48 6.10 16 5 N -0.60 -28.81 2.95 -699.08 -2.06 -30.87 16 6 C -0.27 -14.41 9.50 84.03 0.80 -13.61 16 7 H 0.07 3.37 7.86 -2.91 -0.02 3.34 16 8 C -0.04 -2.11 4.98 84.86 0.42 -1.69 16 9 N -0.93 -55.01 11.56 21.65 0.25 -54.76 16 10 Si 0.96 44.42 29.57 68.60 2.03 46.45 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.19 9.14 4.98 86.36 0.43 9.57 16 15 C -0.14 -5.47 5.77 30.68 0.18 -5.29 16 16 C 0.16 5.24 2.18 45.02 0.10 5.34 16 17 H 0.09 2.74 7.64 -2.39 -0.02 2.72 16 18 N -0.70 -21.91 3.59 -446.73 -1.60 -23.51 16 19 C 0.58 17.85 7.71 86.33 0.67 18.51 16 20 O -0.55 -18.70 16.29 -4.56 -0.07 -18.78 16 21 C -0.01 -0.27 6.70 39.07 0.26 -0.01 16 22 C -0.12 -2.31 10.62 66.74 0.71 -1.60 16 23 S 0.26 3.97 23.33 -56.49 -1.32 2.65 16 24 C -0.12 -2.79 7.81 83.60 0.65 -2.14 16 25 C 0.01 0.35 11.93 83.95 1.00 1.36 16 26 N -0.47 -14.35 11.22 -197.67 -2.22 -16.57 16 27 C 0.17 5.29 11.91 179.54 2.14 7.42 16 28 N -0.40 -10.94 3.20 -344.99 -1.10 -12.05 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.05 1.12 7.54 -2.39 -0.02 1.10 16 32 H 0.01 0.35 6.06 -2.38 -0.01 0.34 16 33 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.04 2.01 6.58 -2.39 -0.02 2.00 16 36 H -0.01 -0.31 7.74 -2.39 -0.02 -0.33 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 39 H 0.40 12.47 3.14 -92.72 -0.29 12.18 16 40 H 0.23 3.21 7.93 -2.91 -0.02 3.19 16 41 H 0.21 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.21 6.27 5.40 -2.91 -0.02 6.25 16 Total: -1.00 -68.18 349.24 3.13 -65.05 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.77 Total: 24.14 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 8.45 Total: 18.26 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -6.74 Total: -137.77 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.07 Total: -18.78 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.32 Total: 2.65 kcal Total: -68.18 3.13 -65.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943289320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.911 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds