Wall clock time and date at job start Tue Mar 31 2020 18:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.69961 * 2 1 4 4 C 1.53628 * 109.66375 * 120.58776 * 2 1 3 5 5 C 1.53039 * 109.24236 * 174.55130 * 4 2 1 6 6 H 1.08999 * 109.44746 * 58.52556 * 5 4 2 7 7 N 1.46497 * 109.46158 * 178.49412 * 5 4 2 8 8 C 1.34769 * 120.00308 * 205.06969 * 7 5 4 9 9 O 1.21761 * 120.00205 * 354.99845 * 8 7 5 10 10 C 1.46258 * 120.00362 * 175.00239 * 8 7 5 11 11 C 1.33475 * 122.21191 * 185.67967 * 10 8 7 12 12 S 1.75723 * 109.86074 * 179.97438 * 11 10 8 13 13 C 1.75947 * 91.05338 * 359.97438 * 12 11 10 14 14 C 1.36293 * 142.80188 * 179.97438 * 13 12 11 15 15 N 1.33739 * 107.81500 * 180.02562 * 14 13 12 16 16 C 1.30357 * 109.46403 * 0.02562 * 15 14 13 17 17 N 1.35922 * 109.81617 * 359.75692 * 13 12 11 18 18 C 1.53046 * 109.53681 * 298.51124 * 5 4 2 19 19 C 1.53189 * 109.31067 * 61.36683 * 18 5 4 20 20 N 1.46922 * 109.58836 * 239.64105 * 2 1 3 21 21 C 1.36932 * 120.63052 * 6.63183 * 20 2 1 22 22 H 1.08005 * 120.00047 * 329.73427 * 21 20 2 23 23 C 1.38819 * 120.00280 * 149.73818 * 21 20 2 24 24 N 1.31614 * 119.99596 * 335.84243 * 23 21 20 25 25 Si 1.86793 * 120.00036 * 155.84276 * 23 21 20 26 26 H 1.48499 * 109.47224 * 265.00823 * 25 23 21 27 27 H 1.48504 * 109.47345 * 25.00821 * 25 23 21 28 28 H 1.48506 * 109.47172 * 145.01055 * 25 23 21 29 29 H 1.08997 * 109.47460 * 180.35572 * 1 2 3 30 30 H 1.09003 * 109.47612 * 300.36052 * 1 2 3 31 31 H 1.09003 * 109.47172 * 60.35656 * 1 2 3 32 32 H 1.08999 * 109.62752 * 54.55972 * 4 2 1 33 33 H 1.08997 * 109.43331 * 294.42204 * 4 2 1 34 34 H 0.97008 * 119.99950 * 25.06391 * 7 5 4 35 35 H 1.07998 * 125.07493 * 359.93768 * 11 10 8 36 36 H 1.07995 * 126.08831 * 359.97438 * 14 13 12 37 37 H 1.07997 * 125.57151 * 179.97438 * 16 15 14 38 38 H 1.08997 * 109.49873 * 301.41387 * 18 5 4 39 39 H 1.09000 * 109.49512 * 181.31680 * 18 5 4 40 40 H 1.08998 * 109.58950 * 185.57716 * 19 18 5 41 41 H 1.09001 * 109.70422 * 65.22390 * 19 18 5 42 42 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5711 -0.8497 1.1678 6 1 4.0062 0.1474 1.0990 7 7 4.0726 -1.5192 2.3704 8 6 5.3361 -1.3017 2.7856 9 8 6.0895 -0.6217 2.1128 10 6 5.8027 -1.8825 4.0442 11 6 7.0056 -1.6065 4.5525 12 16 7.2280 -2.4736 6.0646 13 6 5.6265 -3.1893 5.9274 14 6 4.7566 -4.0316 6.5529 15 7 3.6495 -4.1048 5.8062 16 6 3.7872 -3.3527 4.7504 17 7 5.0218 -2.7510 4.7918 18 6 3.9615 -1.6628 -0.0687 19 6 3.4657 -0.9420 -1.3262 20 7 2.0225 -0.6996 -1.1944 21 6 1.1538 -1.1127 -2.1689 22 1 0.1416 -1.3862 -1.9095 23 6 1.5739 -1.1801 -3.4903 24 7 2.5807 -0.4376 -3.8993 25 14 0.7104 -2.3246 -4.6877 26 1 1.4458 -3.6127 -4.7590 27 1 -0.6778 -2.5723 -4.2221 28 1 0.6768 -1.6986 -6.0339 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 1.6095 -1.7336 1.2890 33 1 1.7687 -0.1770 2.1387 34 1 3.4950 -2.1191 2.8681 35 1 7.7339 -0.9489 4.1014 36 1 4.9308 -4.5486 7.4850 37 1 3.0496 -3.2206 3.9727 38 1 3.5061 -2.6515 -0.0126 39 1 5.0460 -1.7630 -0.1106 40 1 3.6532 -1.5637 -2.2016 41 1 3.9875 0.0088 -1.4347 42 1 2.8746 -0.4850 -4.8225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947771658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:46 Heat of formation + Delta-G solvation = 88.686672 kcal Electronic energy + Delta-G solvation = -26564.641195 eV Core-core repulsion = 22866.671642 eV Total energy + Delta-G solvation = -3697.969553 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.13383 -40.08722 -37.95552 -36.46381 -34.91957 -32.49804 -31.58889 -30.78863 -30.10210 -29.45841 -26.56378 -25.62222 -24.42846 -22.90919 -22.15278 -21.92979 -20.88084 -20.58957 -19.46975 -18.82307 -17.07578 -16.58541 -16.34427 -16.14833 -15.57269 -15.25729 -15.02850 -14.85712 -14.48933 -14.02552 -13.92448 -13.84798 -13.60738 -13.34041 -12.97358 -12.84060 -12.28187 -11.89929 -11.67644 -11.34167 -11.27467 -11.03910 -10.96354 -10.77096 -10.73263 -10.63881 -10.44482 -10.36584 -10.25911 -10.12577 -9.84505 -9.80266 -9.48799 -8.98288 -8.46875 -7.87453 -6.72620 -5.84686 -3.24575 0.21486 0.65607 1.08641 1.37599 2.03380 2.54267 2.88745 2.96202 3.35709 3.44240 3.44750 3.95602 4.12777 4.46195 4.46609 4.73003 4.92068 5.07929 5.13395 5.25666 5.32125 5.42849 5.43630 5.63162 5.84390 5.91676 6.01354 6.05523 6.21611 6.26488 6.31622 6.39351 6.49246 6.50269 6.65805 6.69043 6.96395 7.04155 7.19516 7.28002 7.38331 7.49545 7.81871 7.87755 8.40129 9.14754 9.80102 10.38367 11.23736 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.002807 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.832396 B = 9970.938113 C =10381.861179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.028 0.972 4 C -0.137 4.137 5 C 0.150 3.850 6 H 0.086 0.914 7 N -0.715 5.715 8 C 0.576 3.424 9 O -0.513 6.513 10 C 0.026 3.974 11 C -0.137 4.137 12 S 0.176 5.824 13 C -0.098 4.098 14 C 0.023 3.977 15 N -0.443 5.443 16 C 0.189 3.811 17 N -0.398 5.398 18 C -0.147 4.147 19 C 0.177 3.823 20 N -0.585 5.585 21 C -0.260 4.260 22 H 0.071 0.929 23 C 0.009 3.991 24 N -0.892 5.892 25 Si 0.894 3.106 26 H -0.288 1.288 27 H -0.278 1.278 28 H -0.292 1.292 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.390 0.610 35 H 0.205 0.795 36 H 0.184 0.816 37 H 0.213 0.787 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.232 -3.656 20.819 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.065 3.935 3 H 0.046 0.954 4 C -0.177 4.177 5 C 0.048 3.952 6 H 0.105 0.895 7 N -0.367 5.367 8 C 0.359 3.641 9 O -0.389 6.389 10 C -0.087 4.087 11 C -0.277 4.277 12 S 0.436 5.564 13 C -0.323 4.323 14 C -0.135 4.135 15 N -0.157 5.157 16 C -0.093 4.093 17 N -0.078 5.078 18 C -0.187 4.187 19 C 0.050 3.950 20 N -0.309 5.309 21 C -0.390 4.390 22 H 0.088 0.912 23 C -0.191 4.191 24 N -0.534 5.534 25 Si 0.723 3.277 26 H -0.215 1.215 27 H -0.203 1.203 28 H -0.219 1.219 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.226 0.774 35 H 0.221 0.779 36 H 0.201 0.799 37 H 0.229 0.771 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.175 -3.591 21.190 22.995 hybrid contribution -0.966 -0.366 -1.656 1.952 sum 7.209 -3.957 19.534 21.195 Atomic orbital electron populations 1.21779 0.95520 1.01478 1.00469 1.20431 0.93255 0.93437 0.86396 0.95409 1.22509 0.93090 1.01941 1.00113 1.21211 0.94669 0.96733 0.82616 0.89547 1.46537 1.12580 1.47821 1.29732 1.16948 0.82988 0.81163 0.83049 1.90928 1.54282 1.39130 1.54597 1.19318 0.92994 0.99661 0.96734 1.25830 0.98620 1.04018 0.99245 1.84576 1.07834 1.43900 1.20108 1.24591 1.01233 1.10523 0.95929 1.21833 0.88487 1.01475 1.01753 1.70176 1.23731 1.18593 1.03202 1.25272 0.85872 0.97234 1.00927 1.44225 1.14387 1.32396 1.16831 1.22568 0.99989 0.99682 0.96476 1.20646 0.83652 0.97130 0.93533 1.44198 1.02733 1.64891 1.19041 1.19112 0.95782 1.38139 0.85932 0.91181 1.25052 0.98591 0.98656 0.96812 1.70133 1.29967 1.37237 1.16075 0.86419 0.79398 0.81215 0.80637 1.21481 1.20280 1.21887 0.92718 0.94284 0.91685 0.91571 0.92506 0.77359 0.77850 0.79855 0.77057 0.92391 0.92574 0.90292 0.95836 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 7.96 37.15 0.30 -2.10 16 2 C 0.17 3.35 3.51 -67.38 -0.24 3.11 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -2.14 4.86 -26.38 -0.13 -2.26 16 5 C 0.15 2.44 2.38 -67.89 -0.16 2.28 16 6 H 0.09 1.55 7.65 -51.93 -0.40 1.15 16 7 N -0.71 -9.58 5.07 -55.20 -0.28 -9.86 16 8 C 0.58 8.11 7.70 -13.04 -0.10 8.01 16 9 O -0.51 -8.77 16.26 5.13 0.08 -8.68 16 10 C 0.03 0.30 6.70 -83.21 -0.56 -0.25 16 11 C -0.14 -1.28 10.62 29.07 0.31 -0.97 16 12 S 0.18 1.36 23.33 -107.50 -2.51 -1.15 16 13 C -0.10 -1.00 7.81 -16.44 -0.13 -1.13 16 14 C 0.02 0.23 11.93 -17.42 -0.21 0.02 16 15 N -0.44 -5.17 11.21 -13.83 -0.16 -5.32 16 16 C 0.19 2.04 11.91 -88.29 -1.05 0.99 16 17 N -0.40 -4.42 3.20 -60.40 -0.19 -4.61 16 18 C -0.15 -2.75 5.65 -26.61 -0.15 -2.90 16 19 C 0.18 4.08 5.36 -3.71 -0.02 4.06 16 20 N -0.59 -13.79 2.97 -164.52 -0.49 -14.28 16 21 C -0.26 -6.76 8.49 -15.06 -0.13 -6.89 16 22 H 0.07 1.78 6.32 -52.48 -0.33 1.45 16 23 C 0.01 0.24 4.69 -17.43 -0.08 0.16 16 24 N -0.89 -25.44 11.84 55.49 0.66 -24.78 16 25 Si 0.89 21.17 29.62 -169.99 -5.03 16.13 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H 0.05 0.97 7.44 -51.93 -0.39 0.59 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.32 4.92 -40.82 -0.20 4.12 16 35 H 0.20 1.58 7.94 -52.49 -0.42 1.16 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 37 H 0.21 1.77 6.02 -52.49 -0.32 1.46 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 40 H 0.08 2.04 6.45 -51.93 -0.33 1.70 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 352.07 15.07 5.31 5.31 Total: -1.00 -31.23 352.07 -10.25 -41.49 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.29 Total: 3.63 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.35 Total: 2.12 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.46 Total: -58.85 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.51 Total: -1.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.23 -10.25 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947771658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.174 kcal (2) G-P(sol) polarization free energy of solvation -31.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds