Wall clock time and date at job start Tue Mar 31 2020 18:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.69961 * 2 1 4 4 C 1.53628 * 109.66375 * 120.58776 * 2 1 3 5 5 C 1.53039 * 109.24236 * 174.55130 * 4 2 1 6 6 H 1.08999 * 109.44746 * 58.52556 * 5 4 2 7 7 N 1.46497 * 109.46158 * 178.49412 * 5 4 2 8 8 C 1.34769 * 120.00308 * 205.06969 * 7 5 4 9 9 O 1.21761 * 120.00205 * 354.99845 * 8 7 5 10 10 C 1.46258 * 120.00362 * 175.00239 * 8 7 5 11 11 C 1.33475 * 122.21191 * 185.67967 * 10 8 7 12 12 S 1.75723 * 109.86074 * 179.97438 * 11 10 8 13 13 C 1.75947 * 91.05338 * 359.97438 * 12 11 10 14 14 C 1.36293 * 142.80188 * 179.97438 * 13 12 11 15 15 N 1.33739 * 107.81500 * 180.02562 * 14 13 12 16 16 C 1.30357 * 109.46403 * 0.02562 * 15 14 13 17 17 N 1.35922 * 109.81617 * 359.75692 * 13 12 11 18 18 C 1.53046 * 109.53681 * 298.51124 * 5 4 2 19 19 C 1.53189 * 109.31067 * 61.36683 * 18 5 4 20 20 N 1.46922 * 109.58836 * 239.64105 * 2 1 3 21 21 C 1.36932 * 120.63052 * 6.63183 * 20 2 1 22 22 H 1.08005 * 120.00047 * 329.73427 * 21 20 2 23 23 C 1.38819 * 120.00280 * 149.73818 * 21 20 2 24 24 N 1.31614 * 119.99596 * 335.84243 * 23 21 20 25 25 Si 1.86793 * 120.00036 * 155.84276 * 23 21 20 26 26 H 1.48499 * 109.47224 * 265.00823 * 25 23 21 27 27 H 1.48504 * 109.47345 * 25.00821 * 25 23 21 28 28 H 1.48506 * 109.47172 * 145.01055 * 25 23 21 29 29 H 1.08997 * 109.47460 * 180.35572 * 1 2 3 30 30 H 1.09003 * 109.47612 * 300.36052 * 1 2 3 31 31 H 1.09003 * 109.47172 * 60.35656 * 1 2 3 32 32 H 1.08999 * 109.62752 * 54.55972 * 4 2 1 33 33 H 1.08997 * 109.43331 * 294.42204 * 4 2 1 34 34 H 0.97008 * 119.99950 * 25.06391 * 7 5 4 35 35 H 1.07998 * 125.07493 * 359.93768 * 11 10 8 36 36 H 1.07995 * 126.08831 * 359.97438 * 14 13 12 37 37 H 1.07997 * 125.57151 * 179.97438 * 16 15 14 38 38 H 1.08997 * 109.49873 * 301.41387 * 18 5 4 39 39 H 1.09000 * 109.49512 * 181.31680 * 18 5 4 40 40 H 1.08998 * 109.58950 * 185.57716 * 19 18 5 41 41 H 1.09001 * 109.70422 * 65.22390 * 19 18 5 42 42 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0469 -0.7362 1.2454 5 6 3.5711 -0.8497 1.1678 6 1 4.0062 0.1474 1.0990 7 7 4.0726 -1.5192 2.3704 8 6 5.3361 -1.3017 2.7856 9 8 6.0895 -0.6217 2.1128 10 6 5.8027 -1.8825 4.0442 11 6 7.0056 -1.6065 4.5525 12 16 7.2280 -2.4736 6.0646 13 6 5.6265 -3.1893 5.9274 14 6 4.7566 -4.0316 6.5529 15 7 3.6495 -4.1048 5.8062 16 6 3.7872 -3.3527 4.7504 17 7 5.0218 -2.7510 4.7918 18 6 3.9615 -1.6628 -0.0687 19 6 3.4657 -0.9420 -1.3262 20 7 2.0225 -0.6996 -1.1944 21 6 1.1538 -1.1127 -2.1689 22 1 0.1416 -1.3862 -1.9095 23 6 1.5739 -1.1801 -3.4903 24 7 2.5807 -0.4376 -3.8993 25 14 0.7104 -2.3246 -4.6877 26 1 1.4458 -3.6127 -4.7590 27 1 -0.6778 -2.5723 -4.2221 28 1 0.6768 -1.6986 -6.0339 29 1 -0.3634 -1.0276 0.0064 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 1.6095 -1.7336 1.2890 33 1 1.7687 -0.1770 2.1387 34 1 3.4950 -2.1191 2.8681 35 1 7.7339 -0.9489 4.1014 36 1 4.9308 -4.5486 7.4850 37 1 3.0496 -3.2206 3.9727 38 1 3.5061 -2.6515 -0.0126 39 1 5.0460 -1.7630 -0.1106 40 1 3.6532 -1.5637 -2.2016 41 1 3.9875 0.0088 -1.4347 42 1 2.8746 -0.4850 -4.8225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947771658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:45 Heat of formation + Delta-G solvation = 70.160628 kcal Electronic energy + Delta-G solvation = -26565.444544 eV Core-core repulsion = 22866.671642 eV Total energy + Delta-G solvation = -3698.772902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.89452 -41.23737 -39.43153 -37.35390 -36.33184 -34.26664 -33.11835 -31.61482 -31.52175 -30.48950 -28.10360 -26.99348 -25.82628 -24.03495 -23.42664 -22.90978 -22.02610 -21.85140 -20.88864 -19.83657 -18.33927 -17.85409 -17.44141 -17.28956 -16.95749 -16.39286 -16.04477 -16.00376 -15.77144 -15.56591 -15.28661 -14.94868 -14.66401 -14.57319 -14.52395 -14.37768 -13.39006 -13.13933 -13.05879 -12.75822 -12.67485 -12.66523 -12.59018 -12.40712 -12.11357 -11.91498 -11.76605 -11.62286 -11.56756 -11.54290 -11.34440 -11.11791 -10.61465 -10.53759 -10.24510 -8.68565 -8.55230 -7.87623 -5.29458 -0.58690 -0.03254 0.34859 0.56454 1.26448 1.46135 1.49322 1.57205 1.71129 1.87946 1.95204 2.52282 3.10537 3.26419 3.40597 3.56738 3.69728 3.79101 3.96766 3.98430 4.19574 4.23987 4.33818 4.39202 4.56646 4.61837 4.67625 4.70013 4.75434 4.91656 5.00663 5.02159 5.12363 5.21914 5.30297 5.33319 5.44828 5.54321 5.63863 5.73982 5.75628 6.21082 6.41099 6.62978 6.81606 7.14622 7.87086 8.41256 9.19399 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.020677 B = 0.002807 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.832396 B = 9970.938113 C =10381.861179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.161 3.839 3 H 0.014 0.986 4 C -0.121 4.121 5 C 0.162 3.838 6 H 0.068 0.932 7 N -0.705 5.705 8 C 0.579 3.421 9 O -0.551 6.551 10 C -0.002 4.002 11 C -0.125 4.125 12 S 0.246 5.754 13 C -0.120 4.120 14 C 0.017 3.983 15 N -0.466 5.466 16 C 0.177 3.823 17 N -0.400 5.400 18 C -0.131 4.131 19 C 0.185 3.815 20 N -0.601 5.601 21 C -0.254 4.254 22 H 0.078 0.922 23 C -0.048 4.048 24 N -0.932 5.932 25 Si 0.954 3.046 26 H -0.290 1.290 27 H -0.263 1.263 28 H -0.300 1.300 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.404 0.596 35 H 0.218 0.782 36 H 0.209 0.791 37 H 0.229 0.771 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.044 0.956 41 H -0.006 1.006 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -4.716 23.926 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 H 0.032 0.968 4 C -0.161 4.161 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.358 5.358 8 C 0.363 3.637 9 O -0.430 6.430 10 C -0.116 4.116 11 C -0.266 4.266 12 S 0.507 5.493 13 C -0.344 4.344 14 C -0.141 4.141 15 N -0.180 5.180 16 C -0.105 4.105 17 N -0.080 5.080 18 C -0.171 4.171 19 C 0.058 3.942 20 N -0.325 5.325 21 C -0.385 4.385 22 H 0.096 0.904 23 C -0.244 4.244 24 N -0.577 5.577 25 Si 0.783 3.217 26 H -0.218 1.218 27 H -0.187 1.187 28 H -0.228 1.228 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.243 0.757 35 H 0.235 0.765 36 H 0.226 0.774 37 H 0.245 0.755 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.012 0.988 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.827 -4.681 24.369 26.020 hybrid contribution -0.769 0.004 -2.479 2.596 sum 7.058 -4.677 21.890 23.470 Atomic orbital electron populations 1.21701 0.93894 1.01738 1.01101 1.20704 0.94693 0.92876 0.86261 0.96807 1.22313 0.92067 1.02526 0.99184 1.20824 0.95268 0.95457 0.82629 0.91402 1.46232 1.12890 1.47883 1.28762 1.17219 0.82509 0.80398 0.83544 1.90911 1.55181 1.40901 1.55992 1.18925 0.94133 1.01913 0.96620 1.26241 0.97836 1.02736 0.99759 1.84420 1.05520 1.41707 1.17669 1.25036 1.02663 1.10932 0.95795 1.22317 0.87981 1.01400 1.02407 1.70170 1.24706 1.19278 1.03891 1.25620 0.86241 0.97310 1.01319 1.44224 1.14519 1.32295 1.16986 1.22304 0.99439 0.99604 0.95757 1.20373 0.83911 0.95450 0.94426 1.44461 1.02471 1.65638 1.19898 1.19468 0.96212 1.36414 0.86357 0.90413 1.25774 0.99781 1.00272 0.98600 1.70269 1.32148 1.39354 1.15954 0.85446 0.79006 0.78990 0.78239 1.21754 1.18741 1.22769 0.92581 0.90470 0.94228 0.90379 0.89119 0.75699 0.76508 0.77431 0.75528 0.91875 0.93103 0.93777 0.98798 0.94375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.96 71.98 0.57 -3.69 16 2 C 0.16 6.13 3.51 45.12 0.16 6.28 16 3 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 4 C -0.12 -3.52 4.86 30.82 0.15 -3.37 16 5 C 0.16 5.13 2.38 45.02 0.11 5.24 16 6 H 0.07 2.45 7.65 -2.39 -0.02 2.43 16 7 N -0.71 -17.82 5.07 -446.75 -2.26 -20.09 16 8 C 0.58 15.71 7.70 86.33 0.66 16.37 16 9 O -0.55 -18.77 16.26 -4.54 -0.07 -18.84 16 10 C 0.00 -0.05 6.70 39.07 0.26 0.21 16 11 C -0.12 -2.04 10.62 66.74 0.71 -1.33 16 12 S 0.25 3.00 23.33 -56.49 -1.32 1.68 16 13 C -0.12 -2.13 7.81 83.61 0.65 -1.48 16 14 C 0.02 0.30 11.93 83.95 1.00 1.30 16 15 N -0.47 -9.99 11.21 -197.67 -2.22 -12.21 16 16 C 0.18 3.47 11.91 179.54 2.14 5.61 16 17 N -0.40 -8.05 3.20 -344.99 -1.10 -9.15 16 18 C -0.13 -4.96 5.65 30.67 0.17 -4.79 16 19 C 0.19 8.93 5.36 86.36 0.46 9.39 16 20 N -0.60 -28.75 2.97 -674.42 -2.00 -30.75 16 21 C -0.25 -13.33 8.49 84.04 0.71 -12.62 16 22 H 0.08 3.90 6.32 -2.91 -0.02 3.88 16 23 C -0.05 -2.66 4.69 84.86 0.40 -2.26 16 24 N -0.93 -55.52 11.84 21.65 0.26 -55.26 16 25 Si 0.95 44.39 29.62 68.60 2.03 46.42 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 29 H 0.06 1.86 7.44 -2.39 -0.02 1.84 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.51 7.63 -2.39 -0.02 1.49 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.40 8.03 4.92 -92.70 -0.46 7.58 16 35 H 0.22 2.85 7.94 -2.91 -0.02 2.83 16 36 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.23 3.30 6.02 -2.91 -0.02 3.28 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 40 H 0.04 2.40 6.45 -2.39 -0.02 2.39 16 41 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -70.27 352.07 2.08 -68.19 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.61 Total: 15.14 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 8.16 Total: 14.88 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -7.33 Total: -127.47 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.32 Total: 1.68 kcal Total: -70.27 2.08 -68.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947771658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.352 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds