Wall clock time and date at job start Tue Mar 31 2020 18:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.69748 * 2 1 4 4 C 1.53192 * 109.58777 * 120.35047 * 2 1 3 5 5 C 1.53038 * 109.31117 * 174.42519 * 4 2 1 6 6 H 1.08998 * 109.46146 * 178.63451 * 5 4 2 7 7 N 1.46497 * 109.46220 * 58.65731 * 5 4 2 8 8 C 1.34773 * 120.00371 * 155.00188 * 7 5 4 9 9 O 1.21760 * 119.99672 * 4.90946 * 8 7 5 10 10 C 1.46254 * 120.00475 * 184.91627 * 8 7 5 11 11 C 1.33483 * 122.21166 * 174.49427 * 10 8 7 12 12 S 1.75727 * 109.85609 * 179.85189 * 11 10 8 13 13 C 1.75938 * 91.05615 * 0.34618 * 12 11 10 14 14 C 1.36288 * 142.80243 * 179.84285 * 13 12 11 15 15 N 1.33739 * 107.81853 * 179.97438 * 14 13 12 16 16 C 1.30357 * 109.46304 * 0.02562 * 15 14 13 17 17 N 1.35926 * 109.81969 * 359.79946 * 13 12 11 18 18 C 1.53037 * 109.53720 * 298.63711 * 5 4 2 19 19 C 1.53195 * 109.31675 * 61.36610 * 18 5 4 20 20 N 1.46919 * 109.58729 * 239.64677 * 2 1 3 21 21 C 1.36940 * 120.63067 * 6.57611 * 20 2 1 22 22 H 1.07997 * 120.00204 * 328.77801 * 21 20 2 23 23 C 1.38811 * 119.99699 * 148.77810 * 21 20 2 24 24 N 1.31620 * 120.00404 * 350.22150 * 23 21 20 25 25 Si 1.86808 * 119.99925 * 170.21666 * 23 21 20 26 26 H 1.48507 * 109.46570 * 60.00012 * 25 23 21 27 27 H 1.48493 * 109.47242 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47171 * 300.00158 * 25 23 21 29 29 H 1.09004 * 109.46889 * 299.64372 * 1 2 3 30 30 H 1.08997 * 109.46980 * 59.64981 * 1 2 3 31 31 H 1.08996 * 109.46651 * 179.64854 * 1 2 3 32 32 H 1.08998 * 109.49219 * 54.47249 * 4 2 1 33 33 H 1.08996 * 109.52497 * 294.39635 * 4 2 1 34 34 H 0.96998 * 119.99788 * 335.00177 * 7 5 4 35 35 H 1.07993 * 125.07063 * 359.97438 * 11 10 8 36 36 H 1.07997 * 126.09017 * 359.93849 * 14 13 12 37 37 H 1.08007 * 125.57107 * 179.97438 * 16 15 14 38 38 H 1.09007 * 109.49899 * 181.32024 * 18 5 4 39 39 H 1.09000 * 109.49951 * 301.41061 * 18 5 4 40 40 H 1.08998 * 109.58932 * 185.57984 * 19 18 5 41 41 H 1.08999 * 109.69974 * 65.22214 * 19 18 5 42 42 H 0.96996 * 120.00108 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 3.9379 -1.3448 2.0667 7 7 4.1570 0.4900 1.0749 8 6 5.4211 0.7007 1.4922 9 8 6.1034 -0.2365 1.8646 10 6 5.9733 2.0550 1.4978 11 6 7.1786 2.3299 2.0012 12 16 7.5166 4.0465 1.8372 13 6 5.9519 4.3154 1.0791 14 6 5.1575 5.2844 0.5429 15 7 4.0240 4.7043 0.1338 16 6 4.0733 3.4268 0.3885 17 7 5.2768 3.1393 0.9856 18 6 3.9570 -1.6655 -0.0634 19 6 3.4651 -0.9468 -1.3237 20 7 2.0226 -0.6995 -1.1944 21 6 1.1536 -1.1135 -2.1685 22 1 0.1466 -1.4024 -1.9065 23 6 1.5673 -1.1618 -3.4927 24 7 2.7208 -0.6324 -3.8416 25 14 0.4870 -1.9783 -4.7795 26 1 -0.8241 -1.2832 -4.8382 27 1 1.1496 -1.8971 -6.1059 28 1 0.2762 -3.4029 -4.4173 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3632 -1.0276 -0.0063 32 1 1.6030 -1.7252 1.2914 33 1 1.7660 -0.1672 2.1371 34 1 3.6375 1.2241 0.7116 35 1 7.8471 1.6051 2.4416 36 1 5.3999 6.3338 0.4632 37 1 3.2954 2.7113 0.1659 38 1 5.0413 -1.7694 -0.1036 39 1 3.4985 -2.6527 -0.0051 40 1 3.6518 -1.5717 -2.1971 41 1 3.9901 0.0020 -1.4342 42 1 3.0096 -0.6659 -4.7669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947771659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:50 Heat of formation + Delta-G solvation = 91.781670 kcal Electronic energy + Delta-G solvation = -27454.722894 eV Core-core repulsion = 23756.887551 eV Total energy + Delta-G solvation = -3697.835344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.91517 -40.06489 -38.02673 -36.26155 -34.57370 -32.46991 -31.52152 -30.59043 -29.98500 -29.37301 -26.53760 -25.41234 -24.77175 -22.73023 -22.04022 -21.82426 -20.85379 -20.53227 -19.21550 -18.56131 -16.93714 -16.48009 -16.36477 -15.69419 -15.46015 -15.26297 -14.94348 -14.74339 -14.35517 -14.06663 -13.81215 -13.69202 -13.53588 -13.22996 -12.96264 -12.56740 -12.07080 -11.97051 -11.74533 -11.51721 -11.30113 -11.03229 -10.76052 -10.71406 -10.52183 -10.51558 -10.43832 -10.28663 -10.16409 -10.15015 -9.81489 -9.60612 -9.42168 -8.89751 -8.51463 -7.66855 -6.68325 -5.82261 -3.31359 0.38692 0.83976 1.26142 1.59070 2.24968 2.77402 3.06323 3.14264 3.35220 3.41340 3.41634 4.16970 4.37405 4.43529 4.68139 4.89339 5.08905 5.19440 5.25121 5.29143 5.30780 5.48871 5.54656 5.65574 5.85462 5.96924 6.05811 6.15194 6.20634 6.23397 6.35211 6.43417 6.49434 6.59538 6.73015 6.81375 6.88876 6.97414 7.29068 7.43514 7.63270 7.64110 7.76477 8.01943 8.42116 9.16672 9.78254 10.34789 11.25419 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003775 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.631906 B = 7415.938312 C = 7930.634260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.012 0.988 4 C -0.142 4.142 5 C 0.153 3.847 6 H 0.077 0.923 7 N -0.703 5.703 8 C 0.578 3.422 9 O -0.524 6.524 10 C 0.031 3.969 11 C -0.140 4.140 12 S 0.170 5.830 13 C -0.100 4.100 14 C 0.024 3.976 15 N -0.441 5.441 16 C 0.199 3.801 17 N -0.399 5.399 18 C -0.155 4.155 19 C 0.174 3.826 20 N -0.585 5.585 21 C -0.254 4.254 22 H 0.069 0.931 23 C 0.007 3.993 24 N -0.904 5.904 25 Si 0.903 3.097 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.397 0.603 35 H 0.203 0.797 36 H 0.184 0.816 37 H 0.214 0.786 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.014 0.986 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 7.675 13.281 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.029 0.971 4 C -0.181 4.181 5 C 0.050 3.950 6 H 0.095 0.905 7 N -0.356 5.356 8 C 0.361 3.639 9 O -0.401 6.401 10 C -0.082 4.082 11 C -0.280 4.280 12 S 0.429 5.571 13 C -0.325 4.325 14 C -0.135 4.135 15 N -0.155 5.155 16 C -0.084 4.084 17 N -0.080 5.080 18 C -0.195 4.195 19 C 0.048 3.952 20 N -0.309 5.309 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.733 3.267 26 H -0.208 1.208 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.220 0.780 36 H 0.201 0.799 37 H 0.230 0.770 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.032 0.968 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.995 8.130 13.355 17.561 hybrid contribution -1.165 -1.332 -1.027 2.046 sum 6.830 6.798 12.328 15.647 Atomic orbital electron populations 1.21798 0.95462 1.01727 1.00456 1.20387 0.93532 0.92580 0.87364 0.97075 1.22416 0.93504 1.02826 0.99390 1.21055 0.93313 0.81325 0.99345 0.90482 1.46340 1.13406 1.13652 1.62245 1.16917 0.82527 0.85707 0.78796 1.90873 1.58873 1.41514 1.48861 1.19273 0.94468 0.88408 1.06096 1.25756 0.97912 1.01138 1.03233 1.84449 1.10291 0.99356 1.62973 1.24524 1.00625 0.91442 1.15892 1.21842 0.89493 0.98791 1.03332 1.70200 1.21913 1.04329 1.19076 1.25399 0.87354 0.94392 1.01214 1.44238 1.15188 1.05829 1.42733 1.22596 1.00164 0.99554 0.97227 1.20763 0.83113 0.97076 0.94226 1.44101 1.02946 1.64803 1.19010 1.19108 0.95650 1.37787 0.85789 0.91298 1.25164 0.97397 0.99423 0.97237 1.69947 1.21269 1.46556 1.17048 0.86368 0.79966 0.79424 0.80944 1.20839 1.21667 1.21010 0.94206 0.91733 0.92510 0.90084 0.92441 0.76417 0.78016 0.79914 0.77029 0.92567 0.91376 0.89020 0.96779 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.96 37.16 0.30 -2.06 16 2 C 0.17 3.12 3.20 -67.60 -0.22 2.91 16 3 H 0.01 0.22 6.06 -51.93 -0.31 -0.10 16 4 C -0.14 -2.22 5.07 -26.61 -0.13 -2.35 16 5 C 0.15 2.51 2.74 -67.89 -0.19 2.32 16 6 H 0.08 1.23 7.65 -51.93 -0.40 0.83 16 7 N -0.70 -11.08 4.26 -55.21 -0.24 -11.31 16 8 C 0.58 9.12 7.70 -13.04 -0.10 9.02 16 9 O -0.52 -9.25 16.27 5.14 0.08 -9.17 16 10 C 0.03 0.43 6.70 -83.21 -0.56 -0.13 16 11 C -0.14 -1.54 10.63 29.07 0.31 -1.23 16 12 S 0.17 1.61 23.33 -107.50 -2.51 -0.90 16 13 C -0.10 -1.27 7.81 -16.44 -0.13 -1.40 16 14 C 0.02 0.30 11.93 -17.42 -0.21 0.09 16 15 N -0.44 -6.69 11.21 -13.83 -0.16 -6.85 16 16 C 0.20 2.94 11.91 -88.30 -1.05 1.89 16 17 N -0.40 -5.60 3.20 -60.40 -0.19 -5.79 16 18 C -0.16 -2.94 5.77 -26.61 -0.15 -3.10 16 19 C 0.17 3.96 4.99 -3.71 -0.02 3.95 16 20 N -0.59 -13.38 2.99 -164.78 -0.49 -13.87 16 21 C -0.25 -6.47 8.56 -15.06 -0.13 -6.60 16 22 H 0.07 1.71 6.25 -52.49 -0.33 1.38 16 23 C 0.01 0.18 5.07 -17.43 -0.09 0.09 16 24 N -0.90 -25.42 10.99 55.49 0.61 -24.81 16 25 Si 0.90 21.13 29.57 -169.99 -5.03 16.10 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 31 H 0.06 0.99 7.39 -51.93 -0.38 0.61 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.40 6.10 3.28 -40.82 -0.13 5.97 16 35 H 0.20 1.80 7.94 -52.49 -0.42 1.39 16 36 H 0.18 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.21 3.01 5.42 -52.48 -0.28 2.72 16 38 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 41 H 0.01 0.34 7.74 -51.93 -0.40 -0.06 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -30.21 345.71 -10.12 -40.33 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.04 Total: 7.66 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.37 Total: 3.40 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.47 Total: -62.64 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.51 Total: -0.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.21 -10.12 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947771659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.115 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds