Wall clock time and date at job start Tue Mar 31 2020 18:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.69748 * 2 1 4 4 C 1.53192 * 109.58777 * 120.35047 * 2 1 3 5 5 C 1.53038 * 109.31117 * 174.42519 * 4 2 1 6 6 H 1.08998 * 109.46146 * 178.63451 * 5 4 2 7 7 N 1.46497 * 109.46220 * 58.65731 * 5 4 2 8 8 C 1.34773 * 120.00371 * 155.00188 * 7 5 4 9 9 O 1.21760 * 119.99672 * 4.90946 * 8 7 5 10 10 C 1.46254 * 120.00475 * 184.91627 * 8 7 5 11 11 C 1.33483 * 122.21166 * 174.49427 * 10 8 7 12 12 S 1.75727 * 109.85609 * 179.85189 * 11 10 8 13 13 C 1.75938 * 91.05615 * 0.34618 * 12 11 10 14 14 C 1.36288 * 142.80243 * 179.84285 * 13 12 11 15 15 N 1.33739 * 107.81853 * 179.97438 * 14 13 12 16 16 C 1.30357 * 109.46304 * 0.02562 * 15 14 13 17 17 N 1.35926 * 109.81969 * 359.79946 * 13 12 11 18 18 C 1.53037 * 109.53720 * 298.63711 * 5 4 2 19 19 C 1.53195 * 109.31675 * 61.36610 * 18 5 4 20 20 N 1.46919 * 109.58729 * 239.64677 * 2 1 3 21 21 C 1.36940 * 120.63067 * 6.57611 * 20 2 1 22 22 H 1.07997 * 120.00204 * 328.77801 * 21 20 2 23 23 C 1.38811 * 119.99699 * 148.77810 * 21 20 2 24 24 N 1.31620 * 120.00404 * 350.22150 * 23 21 20 25 25 Si 1.86808 * 119.99925 * 170.21666 * 23 21 20 26 26 H 1.48507 * 109.46570 * 60.00012 * 25 23 21 27 27 H 1.48493 * 109.47242 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47171 * 300.00158 * 25 23 21 29 29 H 1.09004 * 109.46889 * 299.64372 * 1 2 3 30 30 H 1.08997 * 109.46980 * 59.64981 * 1 2 3 31 31 H 1.08996 * 109.46651 * 179.64854 * 1 2 3 32 32 H 1.08998 * 109.49219 * 54.47249 * 4 2 1 33 33 H 1.08996 * 109.52497 * 294.39635 * 4 2 1 34 34 H 0.96998 * 119.99788 * 335.00177 * 7 5 4 35 35 H 1.07993 * 125.07063 * 359.97438 * 11 10 8 36 36 H 1.07997 * 126.09017 * 359.93849 * 14 13 12 37 37 H 1.08007 * 125.57107 * 179.97438 * 16 15 14 38 38 H 1.09007 * 109.49899 * 181.32024 * 18 5 4 39 39 H 1.09000 * 109.49951 * 301.41061 * 18 5 4 40 40 H 1.08998 * 109.58932 * 185.57984 * 19 18 5 41 41 H 1.08999 * 109.69974 * 65.22214 * 19 18 5 42 42 H 0.96996 * 120.00108 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5675 -0.8478 1.1702 6 1 3.9379 -1.3448 2.0667 7 7 4.1570 0.4900 1.0749 8 6 5.4211 0.7007 1.4922 9 8 6.1034 -0.2365 1.8646 10 6 5.9733 2.0550 1.4978 11 6 7.1786 2.3299 2.0012 12 16 7.5166 4.0465 1.8372 13 6 5.9519 4.3154 1.0791 14 6 5.1575 5.2844 0.5429 15 7 4.0240 4.7043 0.1338 16 6 4.0733 3.4268 0.3885 17 7 5.2768 3.1393 0.9856 18 6 3.9570 -1.6655 -0.0634 19 6 3.4651 -0.9468 -1.3237 20 7 2.0226 -0.6995 -1.1944 21 6 1.1536 -1.1135 -2.1685 22 1 0.1466 -1.4024 -1.9065 23 6 1.5673 -1.1618 -3.4927 24 7 2.7208 -0.6324 -3.8416 25 14 0.4870 -1.9783 -4.7795 26 1 -0.8241 -1.2832 -4.8382 27 1 1.1496 -1.8971 -6.1059 28 1 0.2762 -3.4029 -4.4173 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3632 -1.0276 -0.0063 32 1 1.6030 -1.7252 1.2914 33 1 1.7660 -0.1672 2.1371 34 1 3.6375 1.2241 0.7116 35 1 7.8471 1.6051 2.4416 36 1 5.3999 6.3338 0.4632 37 1 3.2954 2.7113 0.1659 38 1 5.0413 -1.7694 -0.1036 39 1 3.4985 -2.6527 -0.0051 40 1 3.6518 -1.5717 -2.1971 41 1 3.9901 0.0020 -1.4342 42 1 3.0096 -0.6659 -4.7669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947771659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:49 Heat of formation + Delta-G solvation = 74.661889 kcal Electronic energy + Delta-G solvation = -27455.465264 eV Core-core repulsion = 23756.887551 eV Total energy + Delta-G solvation = -3698.577713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.91493 -41.32865 -39.46513 -37.33579 -36.08935 -34.17339 -33.02370 -31.62601 -31.54098 -30.50211 -28.08313 -26.95748 -26.07717 -24.01407 -23.50014 -22.87177 -22.33790 -21.66256 -20.57959 -19.78645 -18.33400 -17.87359 -17.42953 -17.13766 -16.90829 -16.45633 -16.20795 -15.95874 -15.72558 -15.55608 -15.30540 -14.86911 -14.66840 -14.62593 -14.39493 -14.15791 -13.39579 -13.23819 -13.12364 -12.81475 -12.71136 -12.61067 -12.51650 -12.34410 -12.22470 -12.00514 -11.75897 -11.55765 -11.49862 -11.44292 -11.35651 -11.05312 -10.62148 -10.51656 -10.23377 -8.59015 -8.53942 -7.82715 -5.32612 -0.58728 -0.03949 0.33366 0.54928 1.26496 1.47776 1.48714 1.54767 1.71087 1.93724 1.98249 2.52061 3.10471 3.33023 3.38594 3.58577 3.68534 3.83097 3.98594 4.01978 4.13710 4.23159 4.35258 4.39489 4.53561 4.60206 4.67083 4.74201 4.86259 4.91247 4.98586 5.05070 5.11629 5.24171 5.36447 5.39453 5.52067 5.54493 5.70343 5.72424 5.75586 6.21533 6.44829 6.61747 6.81015 7.19072 7.89647 8.41107 9.22772 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.003775 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.631906 B = 7415.938312 C = 7930.634260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.159 3.841 3 H 0.013 0.987 4 C -0.129 4.129 5 C 0.158 3.842 6 H 0.091 0.909 7 N -0.706 5.706 8 C 0.579 3.421 9 O -0.549 6.549 10 C -0.010 4.010 11 C -0.120 4.120 12 S 0.256 5.744 13 C -0.119 4.119 14 C 0.015 3.985 15 N -0.466 5.466 16 C 0.173 3.827 17 N -0.398 5.398 18 C -0.143 4.143 19 C 0.187 3.813 20 N -0.599 5.599 21 C -0.248 4.248 22 H 0.077 0.923 23 C -0.051 4.051 24 N -0.939 5.939 25 Si 0.960 3.040 26 H -0.275 1.275 27 H -0.301 1.301 28 H -0.278 1.278 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.225 0.775 36 H 0.213 0.787 37 H 0.208 0.792 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.051 0.949 41 H -0.010 1.010 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.524 8.479 15.719 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.168 4.168 5 C 0.054 3.946 6 H 0.109 0.891 7 N -0.358 5.358 8 C 0.363 3.637 9 O -0.428 6.428 10 C -0.124 4.124 11 C -0.261 4.261 12 S 0.517 5.483 13 C -0.343 4.343 14 C -0.144 4.144 15 N -0.181 5.181 16 C -0.109 4.109 17 N -0.078 5.078 18 C -0.183 4.183 19 C 0.061 3.939 20 N -0.323 5.323 21 C -0.378 4.378 22 H 0.095 0.905 23 C -0.246 4.246 24 N -0.586 5.586 25 Si 0.789 3.211 26 H -0.201 1.201 27 H -0.228 1.228 28 H -0.204 1.204 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.237 0.763 35 H 0.242 0.758 36 H 0.230 0.770 37 H 0.224 0.776 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.008 0.992 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.457 8.946 15.830 20.053 hybrid contribution -1.181 -1.476 -1.692 2.537 sum 7.276 7.470 14.138 17.567 Atomic orbital electron populations 1.21741 0.94199 1.01701 1.01193 1.20660 0.94658 0.92614 0.86711 0.96906 1.22294 0.92550 1.03085 0.98861 1.20970 0.94039 0.81469 0.98115 0.89122 1.46332 1.13774 1.13327 1.62406 1.17154 0.82130 0.86454 0.77936 1.90846 1.59304 1.42500 1.50143 1.19092 0.95877 0.87606 1.09781 1.26269 0.96718 1.03114 1.00006 1.84254 1.06998 0.96726 1.60344 1.25106 1.02319 0.90941 1.15952 1.22379 0.88814 1.00170 1.02992 1.70153 1.23422 1.04704 1.19799 1.25275 0.88141 0.94498 1.02945 1.44213 1.14997 1.06334 1.42280 1.22400 0.99531 0.99635 0.96731 1.20410 0.83507 0.95407 0.94566 1.44304 1.02543 1.65587 1.19901 1.19467 0.96044 1.36026 0.86286 0.90544 1.25847 0.98604 1.00894 0.99208 1.70131 1.23062 1.48814 1.16543 0.85444 0.78553 0.78760 0.78299 1.20099 1.22789 1.20439 0.90503 0.94037 0.92793 0.89691 0.89148 0.76259 0.75830 0.77037 0.77615 0.93229 0.91211 0.93068 0.99219 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.96 71.98 0.57 -3.73 16 2 C 0.16 5.78 3.20 44.98 0.14 5.93 16 3 H 0.01 0.49 6.06 -2.39 -0.01 0.48 16 4 C -0.13 -3.75 5.07 30.67 0.16 -3.60 16 5 C 0.16 5.01 2.74 45.02 0.12 5.13 16 6 H 0.09 2.71 7.65 -2.39 -0.02 2.69 16 7 N -0.71 -22.02 4.26 -446.77 -1.90 -23.93 16 8 C 0.58 17.96 7.70 86.33 0.66 18.62 16 9 O -0.55 -18.93 16.27 -4.54 -0.07 -19.00 16 10 C -0.01 -0.27 6.70 39.07 0.26 -0.01 16 11 C -0.12 -2.32 10.63 66.74 0.71 -1.61 16 12 S 0.26 3.97 23.33 -56.49 -1.32 2.65 16 13 C -0.12 -2.79 7.81 83.60 0.65 -2.14 16 14 C 0.01 0.36 11.93 83.95 1.00 1.36 16 15 N -0.47 -14.19 11.21 -197.67 -2.22 -16.41 16 16 C 0.17 5.23 11.91 179.54 2.14 7.37 16 17 N -0.40 -10.92 3.20 -344.99 -1.10 -12.02 16 18 C -0.14 -5.48 5.77 30.67 0.18 -5.30 16 19 C 0.19 8.88 4.99 86.36 0.43 9.31 16 20 N -0.60 -27.86 2.99 -675.24 -2.02 -29.88 16 21 C -0.25 -12.82 8.56 84.03 0.72 -12.10 16 22 H 0.08 3.78 6.25 -2.91 -0.02 3.76 16 23 C -0.05 -2.77 5.07 84.86 0.43 -2.34 16 24 N -0.94 -55.25 10.99 21.65 0.24 -55.02 16 25 Si 0.96 44.46 29.57 68.60 2.03 46.48 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 31 H 0.05 1.79 7.39 -2.39 -0.02 1.77 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.40 12.34 3.28 -92.71 -0.30 12.04 16 35 H 0.23 3.24 7.94 -2.91 -0.02 3.21 16 36 H 0.21 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.21 6.17 5.42 -2.91 -0.02 6.16 16 38 H 0.05 1.94 8.11 -2.38 -0.02 1.92 16 39 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 40 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 41 H -0.01 -0.53 7.74 -2.39 -0.02 -0.55 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -67.91 345.71 2.58 -65.33 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.77 Total: 24.89 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 8.18 Total: 16.90 kcal Atomic # 7 Polarization: -130.25 SS G_CDS: -7.01 Total: -137.25 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.07 Total: -19.00 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.32 Total: 2.65 kcal Total: -67.91 2.58 -65.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947771659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.991 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds