Wall clock time and date at job start Tue Mar 31 2020 18:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32630 * 2 1 4 4 C 1.54918 * 110.36876 * 122.34993 * 2 1 3 5 5 C 1.55148 * 101.58167 * 155.84990 * 4 2 1 6 6 H 1.09001 * 110.87682 * 82.93519 * 5 4 2 7 7 N 1.46499 * 110.72013 * 206.13667 * 5 4 2 8 8 C 1.36933 * 120.00420 * 199.97939 * 7 5 4 9 9 H 1.07998 * 119.99892 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00415 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99988 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00304 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47291 * 89.99880 * 12 10 8 14 14 H 1.48499 * 109.47313 * 210.00168 * 12 10 8 15 15 H 1.48505 * 109.46846 * 329.99503 * 12 10 8 16 16 C 1.54327 * 102.94463 * 324.49998 * 5 4 2 17 17 N 1.47022 * 107.27058 * 22.19156 * 16 5 4 18 18 C 1.34776 * 125.64897 * 181.04116 * 17 16 5 19 19 O 1.21283 * 120.00013 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99579 * 0.02562 * 18 17 16 21 21 C 1.50708 * 109.46796 * 180.02562 * 20 18 17 22 22 C 1.30907 * 121.83835 * 85.02414 * 21 20 18 23 23 S 1.75787 * 109.81465 * 179.97438 * 22 21 20 24 24 C 1.76248 * 90.70032 * 0.02562 * 23 22 21 25 25 N 1.32362 * 141.95024 * 179.97438 * 24 23 22 26 26 C 1.33878 * 109.13058 * 179.38064 * 25 24 23 27 27 C 1.34332 * 108.39174 * 0.50809 * 26 25 24 28 28 N 1.35149 * 109.22397 * 359.76250 * 24 23 22 29 29 H 1.09002 * 109.47153 * 180.78493 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.78684 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.78665 * 1 2 3 32 32 H 1.08997 * 110.99971 * 273.92470 * 4 2 1 33 33 H 1.08998 * 111.00095 * 37.77321 * 4 2 1 34 34 H 0.97000 * 119.99705 * 19.97433 * 7 5 4 35 35 H 0.96995 * 120.00259 * 179.97438 * 11 10 8 36 36 H 1.09006 * 109.87630 * 262.77691 * 16 5 4 37 37 H 1.08995 * 110.01000 * 141.68729 * 16 5 4 38 38 H 1.09000 * 109.47200 * 299.99946 * 20 18 17 39 39 H 1.08994 * 109.47321 * 60.00622 * 20 18 17 40 40 H 1.07998 * 125.09423 * 359.97438 * 22 21 20 41 41 H 1.08006 * 125.80352 * 180.08307 * 26 25 24 42 42 H 1.07998 * 126.43851 * 179.58796 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 1.2269 5 6 3.4777 -1.2004 0.7331 6 1 4.1969 -0.3931 0.8719 7 7 3.9250 -2.4142 1.4207 8 6 5.2568 -2.7306 1.4547 9 1 5.9775 -2.0856 0.9743 10 6 5.6807 -3.8805 2.1067 11 7 4.8024 -4.6664 2.6928 12 14 7.4974 -4.3125 2.1526 13 1 8.1216 -3.7005 3.3530 14 1 7.6540 -5.7881 2.2110 15 1 8.1608 -3.7924 0.9299 16 6 3.2494 -1.4760 -0.7681 17 7 2.0431 -0.7373 -1.1690 18 6 1.4971 -0.7342 -2.4012 19 8 0.4963 -0.0847 -2.6194 20 6 2.1301 -1.5379 -3.5077 21 6 1.3322 -1.3641 -4.7744 22 6 1.5317 -0.3543 -5.5832 23 16 0.4358 -0.4628 -6.9534 24 6 -0.2595 -1.9479 -6.3074 25 7 -1.1757 -2.8678 -6.5647 26 6 -1.1612 -3.7860 -5.5905 27 6 -0.2256 -3.4362 -4.6923 28 7 0.3579 -2.2601 -5.1464 29 1 -0.3633 -1.0276 0.0141 30 1 -0.3633 0.5016 -0.8970 31 1 -0.3634 0.5260 0.8829 32 1 2.1398 -0.1284 2.1000 33 1 1.4511 -1.6494 1.4393 34 1 3.2776 -2.9937 1.8520 35 1 5.0984 -5.4701 3.1480 36 1 3.1014 -2.5437 -0.9306 37 1 4.1060 -1.1285 -1.3456 38 1 3.1504 -1.1908 -3.6710 39 1 2.1448 -2.5915 -3.2290 40 1 2.2604 0.4282 -5.4314 41 1 -1.7985 -4.6561 -5.5328 42 1 0.0256 -3.9690 -3.7871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989806174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:17 Heat of formation + Delta-G solvation = 85.145733 kcal Electronic energy + Delta-G solvation = -26204.686147 eV Core-core repulsion = 22506.563047 eV Total energy + Delta-G solvation = -3698.123099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.79146 -40.21457 -37.90224 -36.69338 -34.30236 -32.44028 -31.53009 -31.08747 -30.23256 -28.60619 -28.14772 -25.48459 -24.14643 -23.61111 -22.22057 -21.73737 -20.46871 -20.26305 -18.92655 -18.28642 -17.45237 -16.96670 -16.40748 -15.94209 -15.73953 -15.29269 -14.98386 -14.89845 -14.59006 -14.14821 -13.81048 -13.66827 -13.36251 -13.33782 -12.90858 -12.84790 -12.64886 -12.20707 -12.00305 -11.91206 -11.82111 -11.45644 -11.33279 -11.13047 -10.90423 -10.79204 -10.61584 -10.44296 -10.35310 -10.16013 -9.86920 -9.63207 -9.12480 -9.03302 -8.50896 -7.81745 -7.22442 -5.96109 -3.28013 0.72159 0.76494 1.41220 1.99778 2.37827 2.57843 2.77153 3.05706 3.31462 3.37056 3.38979 4.08683 4.37934 4.38407 4.49375 4.66584 4.94682 4.96795 5.01410 5.05585 5.08428 5.11656 5.28801 5.36102 5.43809 5.45639 5.53825 5.71479 5.75491 5.89724 5.96383 6.00274 6.07389 6.28128 6.32250 6.35712 6.37240 6.55882 6.65503 6.71757 7.51592 7.55437 7.61224 8.14633 8.21199 9.33149 9.85952 10.20526 11.25598 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002860 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.805255 B = 9786.271625 C =10501.865443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.173 3.827 6 H 0.067 0.933 7 N -0.713 5.713 8 C -0.253 4.253 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.928 5.928 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.290 1.290 15 H -0.281 1.281 16 C 0.069 3.931 17 N -0.606 5.606 18 C 0.529 3.471 19 O -0.538 6.538 20 C -0.084 4.084 21 C 0.108 3.892 22 C -0.211 4.211 23 S 0.185 5.815 24 C 0.137 3.863 25 N -0.462 5.462 26 C 0.015 3.985 27 C -0.048 4.048 28 N -0.396 5.396 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.258 0.742 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.194 0.806 41 H 0.186 0.814 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.929 8.157 -13.769 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.061 3.939 6 H 0.084 0.916 7 N -0.353 5.353 8 C -0.384 4.384 9 H 0.091 0.909 10 C -0.203 4.203 11 N -0.575 5.575 12 Si 0.739 3.261 13 H -0.215 1.215 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.057 4.057 17 N -0.340 5.340 18 C 0.317 3.683 19 O -0.417 6.417 20 C -0.127 4.127 21 C -0.003 4.003 22 C -0.348 4.348 23 S 0.436 5.564 24 C -0.229 4.229 25 N -0.185 5.185 26 C -0.134 4.134 27 C -0.180 4.180 28 N -0.075 5.075 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.222 0.778 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.211 0.789 41 H 0.203 0.797 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -7.986 9.232 -15.717 19.900 hybrid contribution 1.673 -1.546 2.246 3.199 sum -6.313 7.686 -13.471 16.745 Atomic orbital electron populations 1.22162 0.94265 1.02488 1.03170 1.21885 0.94796 0.95328 0.84493 0.90803 1.23150 0.97683 1.00374 0.96303 1.21154 0.93214 0.91147 0.88418 0.91558 1.42388 1.06095 1.23774 1.63052 1.19232 0.83872 1.05449 1.29821 0.90913 1.24785 0.97826 0.97519 1.00219 1.69656 1.32650 1.15314 1.39880 0.86188 0.84632 0.77474 0.77829 1.21523 1.21661 1.20616 1.23422 0.84979 0.96571 1.00708 1.48609 1.28713 1.48101 1.08529 1.19780 0.84194 0.82091 0.82277 1.90673 1.25152 1.43976 1.81850 1.20505 0.99708 1.03474 0.88974 1.18279 0.92826 0.91188 0.97966 1.24731 1.07836 1.02997 0.99263 1.84594 1.33389 1.16062 1.22374 1.26231 1.00484 1.04417 0.91761 1.70593 1.18099 1.02561 1.27283 1.22392 0.99744 0.99928 0.91373 1.22849 1.01528 0.89367 1.04288 1.43706 1.26219 1.18919 1.18623 0.92880 0.89885 0.92231 0.90021 0.90463 0.77825 0.93229 0.90784 0.92065 0.85805 0.87203 0.78877 0.79690 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.71 37.16 0.32 -1.85 16 2 C 0.14 1.85 3.77 -66.41 -0.25 1.60 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -1.96 6.11 -24.58 -0.15 -2.11 16 5 C 0.17 2.92 3.59 -66.10 -0.24 2.68 16 6 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 7 N -0.71 -15.77 5.18 -51.66 -0.27 -16.04 16 8 C -0.25 -6.31 9.98 -15.06 -0.15 -6.46 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 11 N -0.93 -26.12 13.06 55.49 0.72 -25.39 16 12 Si 0.91 20.80 29.55 -169.99 -5.02 15.78 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.07 1.02 6.24 -3.06 -0.02 1.00 16 17 N -0.61 -8.32 3.24 -163.04 -0.53 -8.85 16 18 C 0.53 7.26 7.62 -10.98 -0.08 7.17 16 19 O -0.54 -8.84 13.69 5.56 0.08 -8.76 16 20 C -0.08 -0.91 5.20 -29.03 -0.15 -1.06 16 21 C 0.11 1.28 5.24 -81.75 -0.43 0.85 16 22 C -0.21 -2.13 10.81 29.04 0.31 -1.82 16 23 S 0.19 1.98 23.37 -107.50 -2.51 -0.53 16 24 C 0.14 1.93 8.92 -88.70 -0.79 1.14 16 25 N -0.46 -6.85 11.33 -13.55 -0.15 -7.00 16 26 C 0.02 0.19 11.82 -18.04 -0.21 -0.03 16 27 C -0.05 -0.58 11.97 -15.71 -0.19 -0.77 16 28 N -0.40 -5.28 3.19 -59.54 -0.19 -5.47 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.24 5.89 -51.93 -0.31 0.94 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.19 7.92 -51.93 -0.41 0.78 16 34 H 0.39 9.28 7.71 -40.82 -0.31 8.96 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.12 1.02 8.13 -51.93 -0.42 0.60 16 39 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.19 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -31.81 364.38 -10.15 -41.96 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.64 Total: 8.74 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.12 Total: 0.07 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.41 Total: -62.75 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.08 Total: -8.76 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.51 Total: -0.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.81 -10.15 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989806174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.105 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds