Wall clock time and date at job start Tue Mar 31 2020 18:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.32630 * 2 1 4 4 C 1.54918 * 110.36876 * 122.34993 * 2 1 3 5 5 C 1.55148 * 101.58167 * 155.84990 * 4 2 1 6 6 H 1.09001 * 110.87682 * 82.93519 * 5 4 2 7 7 N 1.46499 * 110.72013 * 206.13667 * 5 4 2 8 8 C 1.36933 * 120.00420 * 199.97939 * 7 5 4 9 9 H 1.07998 * 119.99892 * 359.97438 * 8 7 5 10 10 C 1.38814 * 120.00415 * 179.97438 * 8 7 5 11 11 N 1.31624 * 119.99988 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00304 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47291 * 89.99880 * 12 10 8 14 14 H 1.48499 * 109.47313 * 210.00168 * 12 10 8 15 15 H 1.48505 * 109.46846 * 329.99503 * 12 10 8 16 16 C 1.54327 * 102.94463 * 324.49998 * 5 4 2 17 17 N 1.47022 * 107.27058 * 22.19156 * 16 5 4 18 18 C 1.34776 * 125.64897 * 181.04116 * 17 16 5 19 19 O 1.21283 * 120.00013 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.99579 * 0.02562 * 18 17 16 21 21 C 1.50708 * 109.46796 * 180.02562 * 20 18 17 22 22 C 1.30907 * 121.83835 * 85.02414 * 21 20 18 23 23 S 1.75787 * 109.81465 * 179.97438 * 22 21 20 24 24 C 1.76248 * 90.70032 * 0.02562 * 23 22 21 25 25 N 1.32362 * 141.95024 * 179.97438 * 24 23 22 26 26 C 1.33878 * 109.13058 * 179.38064 * 25 24 23 27 27 C 1.34332 * 108.39174 * 0.50809 * 26 25 24 28 28 N 1.35149 * 109.22397 * 359.76250 * 24 23 22 29 29 H 1.09002 * 109.47153 * 180.78493 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.78684 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.78665 * 1 2 3 32 32 H 1.08997 * 110.99971 * 273.92470 * 4 2 1 33 33 H 1.08998 * 111.00095 * 37.77321 * 4 2 1 34 34 H 0.97000 * 119.99705 * 19.97433 * 7 5 4 35 35 H 0.96995 * 120.00259 * 179.97438 * 11 10 8 36 36 H 1.09006 * 109.87630 * 262.77691 * 16 5 4 37 37 H 1.08995 * 110.01000 * 141.68729 * 16 5 4 38 38 H 1.09000 * 109.47200 * 299.99946 * 20 18 17 39 39 H 1.08994 * 109.47321 * 60.00622 * 20 18 17 40 40 H 1.07998 * 125.09423 * 359.97438 * 22 21 20 41 41 H 1.08006 * 125.80352 * 180.08307 * 26 25 24 42 42 H 1.07998 * 126.43851 * 179.58796 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 1.2269 5 6 3.4777 -1.2004 0.7331 6 1 4.1969 -0.3931 0.8719 7 7 3.9250 -2.4142 1.4207 8 6 5.2568 -2.7306 1.4547 9 1 5.9775 -2.0856 0.9743 10 6 5.6807 -3.8805 2.1067 11 7 4.8024 -4.6664 2.6928 12 14 7.4974 -4.3125 2.1526 13 1 8.1216 -3.7005 3.3530 14 1 7.6540 -5.7881 2.2110 15 1 8.1608 -3.7924 0.9299 16 6 3.2494 -1.4760 -0.7681 17 7 2.0431 -0.7373 -1.1690 18 6 1.4971 -0.7342 -2.4012 19 8 0.4963 -0.0847 -2.6194 20 6 2.1301 -1.5379 -3.5077 21 6 1.3322 -1.3641 -4.7744 22 6 1.5317 -0.3543 -5.5832 23 16 0.4358 -0.4628 -6.9534 24 6 -0.2595 -1.9479 -6.3074 25 7 -1.1757 -2.8678 -6.5647 26 6 -1.1612 -3.7860 -5.5905 27 6 -0.2256 -3.4362 -4.6923 28 7 0.3579 -2.2601 -5.1464 29 1 -0.3633 -1.0276 0.0141 30 1 -0.3633 0.5016 -0.8970 31 1 -0.3634 0.5260 0.8829 32 1 2.1398 -0.1284 2.1000 33 1 1.4511 -1.6494 1.4393 34 1 3.2776 -2.9937 1.8520 35 1 5.0984 -5.4701 3.1480 36 1 3.1014 -2.5437 -0.9306 37 1 4.1060 -1.1285 -1.3456 38 1 3.1504 -1.1908 -3.6710 39 1 2.1448 -2.5915 -3.2290 40 1 2.2604 0.4282 -5.4314 41 1 -1.7985 -4.6561 -5.5328 42 1 0.0256 -3.9690 -3.7871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989806174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:16 Heat of formation + Delta-G solvation = 66.468146 kcal Electronic energy + Delta-G solvation = -26205.496068 eV Core-core repulsion = 22506.563047 eV Total energy + Delta-G solvation = -3698.933020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.69769 -41.32969 -39.03343 -37.69408 -35.93951 -33.53497 -33.17228 -32.04150 -31.16845 -30.08605 -29.08434 -26.64721 -25.83316 -24.65072 -23.28113 -22.72094 -21.79134 -21.21918 -20.00324 -19.18395 -19.17584 -18.10146 -17.54915 -17.00462 -16.67824 -16.56283 -16.11625 -15.87474 -15.68839 -15.39501 -15.34386 -14.88920 -14.46837 -14.39003 -14.27712 -13.79606 -13.66737 -13.32629 -13.30859 -13.02484 -12.91599 -12.81676 -12.75039 -12.39149 -12.25312 -12.14574 -12.06687 -11.70132 -11.54863 -11.51778 -11.33267 -11.01172 -10.68424 -9.93221 -9.64715 -9.05561 -8.69048 -7.93238 -5.23097 -0.14756 -0.10131 0.58281 1.07528 1.50169 1.52159 1.52917 1.55655 1.60611 1.83006 2.00362 2.58316 3.23173 3.37803 3.39114 3.50852 3.81070 3.84395 3.88640 3.94248 4.14973 4.19524 4.26881 4.31782 4.34933 4.47068 4.51014 4.52874 4.59327 4.72884 4.78863 4.88344 5.02504 5.11199 5.16587 5.21898 5.33817 5.47674 5.51186 5.57399 5.78028 6.27531 6.50443 6.62566 7.07991 7.35551 8.07663 8.30290 9.29696 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.002860 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.805255 B = 9786.271625 C =10501.865443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.090 0.910 4 C -0.127 4.127 5 C 0.165 3.835 6 H 0.073 0.927 7 N -0.726 5.726 8 C -0.239 4.239 9 H 0.085 0.915 10 C -0.071 4.071 11 N -0.968 5.968 12 Si 0.967 3.033 13 H -0.291 1.291 14 H -0.302 1.302 15 H -0.265 1.265 16 C 0.084 3.916 17 N -0.605 5.605 18 C 0.530 3.470 19 O -0.566 6.566 20 C -0.076 4.076 21 C 0.080 3.920 22 C -0.197 4.197 23 S 0.210 5.790 24 C 0.105 3.895 25 N -0.497 5.497 26 C 0.006 3.994 27 C -0.059 4.059 28 N -0.401 5.401 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.155 0.845 39 H 0.113 0.887 40 H 0.227 0.773 41 H 0.212 0.788 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 9.790 -14.571 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.165 4.165 5 C 0.055 3.945 6 H 0.091 0.909 7 N -0.365 5.365 8 C -0.371 4.371 9 H 0.102 0.898 10 C -0.263 4.263 11 N -0.619 5.619 12 Si 0.797 3.203 13 H -0.218 1.218 14 H -0.229 1.229 15 H -0.189 1.189 16 C -0.042 4.042 17 N -0.339 5.339 18 C 0.318 3.682 19 O -0.446 6.446 20 C -0.118 4.118 21 C -0.030 4.030 22 C -0.334 4.334 23 S 0.461 5.539 24 C -0.260 4.260 25 N -0.221 5.221 26 C -0.143 4.143 27 C -0.192 4.192 28 N -0.080 5.080 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.207 0.793 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.172 0.828 39 H 0.131 0.869 40 H 0.243 0.757 41 H 0.229 0.771 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.798 10.923 -16.558 20.969 hybrid contribution 1.228 -1.930 2.449 3.351 sum -5.570 8.994 -14.109 17.634 Atomic orbital electron populations 1.22060 0.94195 1.01604 1.03339 1.21933 0.94781 0.95838 0.83819 0.89223 1.23055 0.95894 1.00219 0.97357 1.21371 0.94545 0.89253 0.89373 0.90901 1.42540 1.05023 1.25165 1.63770 1.19646 0.85291 1.04610 1.27526 0.89763 1.25502 1.01234 0.98266 1.01344 1.69805 1.34220 1.15877 1.41966 0.85239 0.80713 0.76308 0.78079 1.21835 1.22905 1.18939 1.23040 0.86057 0.95930 0.99145 1.48606 1.28437 1.47968 1.08853 1.20228 0.83690 0.81723 0.82526 1.90671 1.26353 1.45298 1.82264 1.20517 1.00711 1.03132 0.87418 1.18548 0.93549 0.91905 0.99023 1.25244 1.07331 1.02745 0.98089 1.84472 1.32823 1.14364 1.22275 1.26793 1.00966 1.05578 0.92692 1.70546 1.19224 1.03691 1.28667 1.22921 1.00148 1.00357 0.90860 1.23269 1.01555 0.89443 1.04942 1.43927 1.26399 1.19241 1.18469 0.94296 0.91363 0.90314 0.88703 0.91789 0.79309 0.94142 0.92274 0.90016 0.82757 0.86922 0.75681 0.77140 0.78347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.88 8.71 71.98 0.63 -3.25 16 2 C 0.14 3.41 3.77 45.47 0.17 3.58 16 3 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 4 C -0.13 -3.42 6.11 31.99 0.20 -3.23 16 5 C 0.16 5.23 3.59 46.18 0.17 5.40 16 6 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 7 N -0.73 -31.52 5.18 -317.34 -1.64 -33.17 16 8 C -0.24 -11.65 9.98 84.03 0.84 -10.81 16 9 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 10 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 11 N -0.97 -55.34 13.06 21.65 0.28 -55.05 16 12 Si 0.97 42.51 29.55 68.60 2.03 44.54 16 13 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 C 0.08 2.27 6.24 86.73 0.54 2.81 16 17 N -0.61 -15.23 3.24 -788.13 -2.56 -17.79 16 18 C 0.53 13.38 7.62 87.66 0.67 14.05 16 19 O -0.57 -17.70 13.69 -3.04 -0.04 -17.74 16 20 C -0.08 -1.44 5.20 29.11 0.15 -1.29 16 21 C 0.08 1.73 5.24 41.73 0.22 1.95 16 22 C -0.20 -3.48 10.81 67.88 0.73 -2.74 16 23 S 0.21 4.20 23.37 -56.49 -1.32 2.88 16 24 C 0.10 2.91 8.92 179.68 1.60 4.51 16 25 N -0.50 -14.81 11.33 -196.79 -2.23 -17.03 16 26 C 0.01 0.15 11.82 83.49 0.99 1.14 16 27 C -0.06 -1.42 11.97 82.67 0.99 -0.43 16 28 N -0.40 -10.36 3.19 -342.27 -1.09 -11.45 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.96 5.89 -2.39 -0.01 1.95 16 31 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 1.92 7.92 -2.39 -0.02 1.90 16 34 H 0.37 18.06 7.71 -92.71 -0.72 17.35 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.06 1.81 8.03 -2.38 -0.02 1.79 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.15 1.94 8.13 -2.39 -0.02 1.92 16 39 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.23 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.21 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -69.06 364.38 2.12 -66.93 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.33 Total: 29.46 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 8.36 Total: 8.43 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -7.23 Total: -134.49 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.04 Total: -17.74 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.32 Total: 2.88 kcal Total: -69.06 2.12 -66.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989806174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.403 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds