Wall clock time and date at job start Tue Mar 31 2020 18:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.58125 * 2 1 4 4 C 1.53192 * 109.58492 * 120.28097 * 2 1 3 5 5 H 1.09000 * 109.50334 * 294.40569 * 4 2 1 6 6 N 1.46500 * 109.49650 * 54.47632 * 4 2 1 7 7 C 1.34783 * 119.99516 * 204.99426 * 6 4 2 8 8 O 1.21757 * 120.00058 * 3.62477 * 7 6 4 9 9 C 1.46262 * 119.99524 * 183.89648 * 7 6 4 10 10 C 1.33476 * 122.20833 * 185.36843 * 9 7 6 11 11 S 1.75719 * 109.86015 * 179.97438 * 10 9 7 12 12 C 1.75942 * 91.05237 * 359.97438 * 11 10 9 13 13 C 1.36295 * 142.80149 * 179.97438 * 12 11 10 14 14 N 1.33743 * 107.81652 * 179.35671 * 13 12 11 15 15 C 1.30358 * 109.46164 * 0.54953 * 14 13 12 16 16 N 1.35923 * 109.81971 * 359.75925 * 12 11 10 17 17 C 1.53044 * 109.30809 * 174.42619 * 4 2 1 18 18 C 1.53038 * 109.53746 * 298.63638 * 17 4 2 19 19 C 1.53182 * 109.31631 * 61.36693 * 18 17 4 20 20 N 1.46917 * 109.58836 * 239.57439 * 2 1 3 21 21 C 1.36937 * 120.63083 * 6.62453 * 20 2 1 22 22 H 1.08001 * 120.00175 * 330.08466 * 21 20 2 23 23 C 1.38813 * 120.00107 * 150.08864 * 21 20 2 24 24 N 1.31620 * 120.00028 * 343.98508 * 23 21 20 25 25 Si 1.86799 * 120.00030 * 163.97998 * 23 21 20 26 26 H 1.48496 * 109.47247 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47109 * 120.00314 * 25 23 21 28 28 H 1.48498 * 109.47516 * 240.00020 * 25 23 21 29 29 H 1.09001 * 109.47127 * 299.71139 * 1 2 3 30 30 H 1.08994 * 109.47142 * 59.71969 * 1 2 3 31 31 H 1.08998 * 109.46849 * 179.71883 * 1 2 3 32 32 H 0.96991 * 119.99962 * 24.99928 * 6 4 2 33 33 H 1.08002 * 125.07233 * 359.97438 * 10 9 7 34 34 H 1.08005 * 126.08814 * 0.02562 * 13 12 11 35 35 H 1.07994 * 125.57286 * 179.51847 * 15 14 13 36 36 H 1.08999 * 109.46341 * 58.65943 * 17 4 2 37 37 H 1.08997 * 109.45802 * 178.61420 * 17 4 2 38 38 H 1.09007 * 109.49708 * 301.41248 * 18 17 4 39 39 H 1.09005 * 109.52544 * 181.33787 * 18 17 4 40 40 H 1.09001 * 109.58902 * 185.57667 * 19 18 17 41 41 H 1.09000 * 109.58542 * 65.15030 * 19 18 17 42 42 H 0.96995 * 120.00153 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2464 5 1 1.7656 -0.1644 2.1371 6 7 1.4515 -2.0663 1.3097 7 6 1.3285 -2.6932 2.4965 8 8 1.6483 -2.1217 3.5229 9 6 0.8166 -4.0623 2.5507 10 6 0.5779 -4.6874 3.7056 11 16 -0.0271 -6.3074 3.3936 12 6 0.0768 -6.0467 1.6567 13 6 -0.1435 -6.6481 0.4536 14 7 0.1724 -5.7716 -0.5059 15 6 0.5879 -4.6624 0.0387 16 7 0.5406 -4.7940 1.4056 17 6 3.5675 -0.8463 1.1712 18 6 3.9570 -1.6656 -0.0614 19 6 3.4652 -0.9485 -1.3225 20 7 2.0226 -0.7010 -1.1935 21 6 1.1538 -1.1153 -2.1675 22 1 0.1401 -1.3832 -1.9086 23 6 1.5761 -1.1912 -3.4877 24 7 2.6809 -0.5813 -3.8614 25 14 0.5763 -2.1591 -4.7339 26 1 -0.6134 -2.7456 -4.0661 27 1 0.1347 -1.2536 -5.8250 28 1 1.4123 -3.2472 -5.3017 29 1 -0.3633 0.5093 0.8926 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0277 -0.0050 32 1 1.1480 -2.5013 0.4976 33 1 0.7334 -4.2611 4.6857 34 1 -0.5176 -7.6499 0.3021 35 1 0.9161 -3.7840 -0.4969 36 1 4.0061 0.1489 1.0992 37 1 3.9378 -1.3420 2.0686 38 1 3.4984 -2.6527 -0.0019 39 1 5.0413 -1.7700 -0.1017 40 1 3.6520 -1.5744 -2.1951 41 1 3.9904 0.0004 -1.4316 42 1 2.9762 -0.6346 -4.7837 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993915312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:33 Heat of formation + Delta-G solvation = 90.054402 kcal Electronic energy + Delta-G solvation = -27987.636531 eV Core-core repulsion = 24289.726287 eV Total energy + Delta-G solvation = -3697.910244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.82762 -40.02713 -38.00448 -36.17673 -34.21670 -32.60370 -31.87142 -30.52049 -29.95590 -29.21397 -26.55079 -25.22659 -24.84281 -22.67950 -21.99688 -21.57763 -20.97312 -20.32912 -19.15298 -18.61385 -16.82850 -16.58289 -16.25997 -15.73292 -15.24084 -15.21231 -14.88901 -14.76626 -14.32222 -13.97670 -13.67193 -13.60955 -13.54154 -13.19203 -13.05042 -12.67283 -12.04515 -11.97224 -11.69507 -11.39796 -11.36056 -11.05260 -10.77882 -10.74474 -10.60464 -10.39960 -10.37672 -10.23937 -10.15351 -10.06813 -9.80558 -9.53873 -9.41977 -8.82704 -8.56603 -7.59965 -6.78195 -5.90005 -3.37205 0.43950 0.89580 1.31727 1.66663 2.33340 2.86327 3.12946 3.25402 3.34068 3.43849 3.45866 4.27723 4.40277 4.54980 4.77994 4.95860 5.14559 5.19163 5.23434 5.39065 5.41037 5.46190 5.59260 5.75797 5.81749 5.96700 6.08606 6.14568 6.22905 6.27821 6.38653 6.44595 6.53946 6.63325 6.75288 6.80179 6.86988 6.92821 7.26055 7.55339 7.57821 7.70407 7.74966 8.11808 8.32566 9.08739 9.71328 10.28044 11.17617 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.005242 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.445858 B = 5339.704442 C = 6861.927586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.157 3.843 3 H 0.045 0.955 4 C 0.131 3.869 5 H 0.083 0.917 6 N -0.691 5.691 7 C 0.573 3.427 8 O -0.532 6.532 9 C 0.033 3.967 10 C -0.143 4.143 11 S 0.164 5.836 12 C -0.104 4.104 13 C 0.023 3.977 14 N -0.441 5.441 15 C 0.204 3.796 16 N -0.401 5.401 17 C -0.121 4.121 18 C -0.142 4.142 19 C 0.171 3.829 20 N -0.587 5.587 21 C -0.268 4.268 22 H 0.071 0.929 23 C 0.014 3.986 24 N -0.895 5.895 25 Si 0.895 3.105 26 H -0.273 1.273 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.405 0.595 33 H 0.201 0.799 34 H 0.182 0.818 35 H 0.223 0.777 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.021 0.979 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.266 -8.003 13.667 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 H 0.062 0.938 4 C 0.025 3.975 5 H 0.101 0.899 6 N -0.343 5.343 7 C 0.356 3.644 8 O -0.410 6.410 9 C -0.081 4.081 10 C -0.283 4.283 11 S 0.423 5.577 12 C -0.328 4.328 13 C -0.135 4.135 14 N -0.155 5.155 15 C -0.079 4.079 16 N -0.082 5.082 17 C -0.160 4.160 18 C -0.181 4.181 19 C 0.045 3.955 20 N -0.311 5.311 21 C -0.397 4.397 22 H 0.088 0.912 23 C -0.186 4.186 24 N -0.537 5.537 25 Si 0.725 3.275 26 H -0.198 1.198 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.245 0.755 33 H 0.218 0.782 34 H 0.200 0.800 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.402 -8.694 14.194 16.989 hybrid contribution 0.010 0.639 -1.192 1.353 sum -3.392 -8.055 13.001 15.666 Atomic orbital electron populations 1.21795 0.95554 1.01283 1.00777 1.20744 0.93405 0.94129 0.86721 0.93787 1.21738 0.93150 0.82038 1.00594 0.89931 1.46204 1.60424 1.19262 1.08416 1.16986 0.79006 0.83425 0.84993 1.90853 1.51068 1.65610 1.33475 1.19300 1.08831 0.95237 0.84700 1.25724 1.02930 0.97979 1.01710 1.84404 1.70779 1.10846 0.91666 1.24488 1.15870 0.91499 1.00940 1.21862 1.07015 1.00479 0.84141 1.70245 1.14436 1.00141 1.30687 1.25727 1.05436 1.00669 0.76025 1.44304 1.45828 1.11160 1.06936 1.21784 0.94969 1.00889 0.98338 1.22161 0.99269 0.99268 0.97387 1.20806 0.83155 0.97326 0.94170 1.44209 1.03150 1.64769 1.18924 1.19149 0.95296 1.39005 0.86207 0.91157 1.25101 0.97665 0.98844 0.97012 1.70031 1.24234 1.42666 1.16803 0.86334 0.79964 0.79655 0.81567 1.19810 1.21772 1.21324 0.94042 0.91407 0.93212 0.75519 0.78161 0.80049 0.76096 0.91342 0.93093 0.93254 0.93111 0.89528 0.96102 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.73 37.16 0.29 -2.08 16 2 C 0.16 2.93 3.20 -67.60 -0.22 2.71 16 3 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.13 2.18 2.36 -67.81 -0.16 2.02 16 5 H 0.08 1.36 7.53 -51.93 -0.39 0.96 16 6 N -0.69 -11.18 3.45 -55.12 -0.19 -11.37 16 7 C 0.57 9.08 7.71 -13.03 -0.10 8.98 16 8 O -0.53 -9.27 16.23 5.14 0.08 -9.19 16 9 C 0.03 0.46 6.70 -83.21 -0.56 -0.10 16 10 C -0.14 -1.60 10.62 29.07 0.31 -1.30 16 11 S 0.16 1.61 23.33 -107.50 -2.51 -0.90 16 12 C -0.10 -1.37 7.81 -16.44 -0.13 -1.50 16 13 C 0.02 0.31 11.93 -17.42 -0.21 0.11 16 14 N -0.44 -7.28 11.21 -13.83 -0.16 -7.44 16 15 C 0.20 3.29 11.90 -88.29 -1.05 2.24 16 16 N -0.40 -5.88 3.20 -60.40 -0.19 -6.08 16 17 C -0.12 -2.00 5.58 -26.69 -0.15 -2.15 16 18 C -0.14 -2.54 5.93 -26.62 -0.16 -2.70 16 19 C 0.17 3.70 5.28 -3.71 -0.02 3.68 16 20 N -0.59 -12.73 2.64 -164.78 -0.44 -13.16 16 21 C -0.27 -6.41 8.57 -15.06 -0.13 -6.54 16 22 H 0.07 1.65 6.23 -52.49 -0.33 1.33 16 23 C 0.01 0.36 4.92 -17.43 -0.09 0.27 16 24 N -0.89 -24.25 11.27 55.49 0.63 -23.62 16 25 Si 0.90 20.67 29.58 -169.99 -5.03 15.64 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.27 7.67 -51.93 -0.40 0.87 16 31 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 32 H 0.41 6.78 4.16 -40.82 -0.17 6.61 16 33 H 0.20 1.83 7.94 -52.49 -0.42 1.41 16 34 H 0.18 1.85 8.06 -52.48 -0.42 1.42 16 35 H 0.22 3.70 6.07 -52.49 -0.32 3.38 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 2.13 6.17 -51.93 -0.32 1.81 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 347.37 15.07 5.23 5.23 Total: -1.00 -28.32 347.37 -10.09 -38.42 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.16 Total: 8.83 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.37 Total: 3.64 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.35 Total: -61.67 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.51 Total: -0.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.32 -10.09 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993915312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.470 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds