Wall clock time and date at job start Tue Mar 31 2020 18:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.58125 * 2 1 4 4 C 1.53192 * 109.58492 * 120.28097 * 2 1 3 5 5 H 1.09000 * 109.50334 * 294.40569 * 4 2 1 6 6 N 1.46500 * 109.49650 * 54.47632 * 4 2 1 7 7 C 1.34783 * 119.99516 * 204.99426 * 6 4 2 8 8 O 1.21757 * 120.00058 * 3.62477 * 7 6 4 9 9 C 1.46262 * 119.99524 * 183.89648 * 7 6 4 10 10 C 1.33476 * 122.20833 * 185.36843 * 9 7 6 11 11 S 1.75719 * 109.86015 * 179.97438 * 10 9 7 12 12 C 1.75942 * 91.05237 * 359.97438 * 11 10 9 13 13 C 1.36295 * 142.80149 * 179.97438 * 12 11 10 14 14 N 1.33743 * 107.81652 * 179.35671 * 13 12 11 15 15 C 1.30358 * 109.46164 * 0.54953 * 14 13 12 16 16 N 1.35923 * 109.81971 * 359.75925 * 12 11 10 17 17 C 1.53044 * 109.30809 * 174.42619 * 4 2 1 18 18 C 1.53038 * 109.53746 * 298.63638 * 17 4 2 19 19 C 1.53182 * 109.31631 * 61.36693 * 18 17 4 20 20 N 1.46917 * 109.58836 * 239.57439 * 2 1 3 21 21 C 1.36937 * 120.63083 * 6.62453 * 20 2 1 22 22 H 1.08001 * 120.00175 * 330.08466 * 21 20 2 23 23 C 1.38813 * 120.00107 * 150.08864 * 21 20 2 24 24 N 1.31620 * 120.00028 * 343.98508 * 23 21 20 25 25 Si 1.86799 * 120.00030 * 163.97998 * 23 21 20 26 26 H 1.48496 * 109.47247 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47109 * 120.00314 * 25 23 21 28 28 H 1.48498 * 109.47516 * 240.00020 * 25 23 21 29 29 H 1.09001 * 109.47127 * 299.71139 * 1 2 3 30 30 H 1.08994 * 109.47142 * 59.71969 * 1 2 3 31 31 H 1.08998 * 109.46849 * 179.71883 * 1 2 3 32 32 H 0.96991 * 119.99962 * 24.99928 * 6 4 2 33 33 H 1.08002 * 125.07233 * 359.97438 * 10 9 7 34 34 H 1.08005 * 126.08814 * 0.02562 * 13 12 11 35 35 H 1.07994 * 125.57286 * 179.51847 * 15 14 13 36 36 H 1.08999 * 109.46341 * 58.65943 * 17 4 2 37 37 H 1.08997 * 109.45802 * 178.61420 * 17 4 2 38 38 H 1.09007 * 109.49708 * 301.41248 * 18 17 4 39 39 H 1.09005 * 109.52544 * 181.33787 * 18 17 4 40 40 H 1.09001 * 109.58902 * 185.57667 * 19 18 17 41 41 H 1.09000 * 109.58542 * 65.15030 * 19 18 17 42 42 H 0.96995 * 120.00153 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2464 5 1 1.7656 -0.1644 2.1371 6 7 1.4515 -2.0663 1.3097 7 6 1.3285 -2.6932 2.4965 8 8 1.6483 -2.1217 3.5229 9 6 0.8166 -4.0623 2.5507 10 6 0.5779 -4.6874 3.7056 11 16 -0.0271 -6.3074 3.3936 12 6 0.0768 -6.0467 1.6567 13 6 -0.1435 -6.6481 0.4536 14 7 0.1724 -5.7716 -0.5059 15 6 0.5879 -4.6624 0.0387 16 7 0.5406 -4.7940 1.4056 17 6 3.5675 -0.8463 1.1712 18 6 3.9570 -1.6656 -0.0614 19 6 3.4652 -0.9485 -1.3225 20 7 2.0226 -0.7010 -1.1935 21 6 1.1538 -1.1153 -2.1675 22 1 0.1401 -1.3832 -1.9086 23 6 1.5761 -1.1912 -3.4877 24 7 2.6809 -0.5813 -3.8614 25 14 0.5763 -2.1591 -4.7339 26 1 -0.6134 -2.7456 -4.0661 27 1 0.1347 -1.2536 -5.8250 28 1 1.4123 -3.2472 -5.3017 29 1 -0.3633 0.5093 0.8926 30 1 -0.3633 0.5182 -0.8874 31 1 -0.3633 -1.0277 -0.0050 32 1 1.1480 -2.5013 0.4976 33 1 0.7334 -4.2611 4.6857 34 1 -0.5176 -7.6499 0.3021 35 1 0.9161 -3.7840 -0.4969 36 1 4.0061 0.1489 1.0992 37 1 3.9378 -1.3420 2.0686 38 1 3.4984 -2.6527 -0.0019 39 1 5.0413 -1.7700 -0.1017 40 1 3.6520 -1.5744 -2.1951 41 1 3.9904 0.0004 -1.4316 42 1 2.9762 -0.6346 -4.7837 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993915312.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:33 Heat of formation + Delta-G solvation = 75.502888 kcal Electronic energy + Delta-G solvation = -27988.267532 eV Core-core repulsion = 24289.726287 eV Total energy + Delta-G solvation = -3698.541245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.88091 -41.30739 -39.43424 -37.28409 -35.77178 -34.14143 -33.48937 -31.57962 -31.42646 -30.43149 -28.05179 -26.91655 -26.06428 -23.98129 -23.33226 -22.78814 -22.41163 -21.53270 -20.57572 -19.77907 -18.31351 -17.88553 -17.38298 -17.20043 -16.73354 -16.39657 -16.20122 -15.97211 -15.73036 -15.35336 -15.18925 -14.84925 -14.71361 -14.61012 -14.43581 -14.21140 -13.60436 -13.14219 -12.98435 -12.92731 -12.76871 -12.58750 -12.47619 -12.36351 -12.24656 -11.94531 -11.73344 -11.50755 -11.46692 -11.36863 -11.33225 -11.06619 -10.59331 -10.52430 -10.12656 -8.63517 -8.51090 -7.84944 -5.31200 -0.55452 -0.01891 0.36072 0.57996 1.30601 1.45899 1.52841 1.58841 1.74984 1.98320 2.06477 2.51541 3.18846 3.32320 3.46908 3.55515 3.72887 3.91016 3.99872 4.03249 4.15963 4.25156 4.34114 4.40270 4.50320 4.61269 4.68172 4.72593 4.89443 4.94617 4.97458 5.05405 5.15921 5.26172 5.29865 5.37550 5.45525 5.53742 5.72062 5.74295 5.78681 6.33263 6.42023 6.67034 6.88493 7.18005 7.87053 8.39649 9.21412 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.005242 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.445858 B = 5339.704442 C = 6861.927586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.155 3.845 3 H 0.041 0.959 4 C 0.139 3.861 5 H 0.093 0.907 6 N -0.695 5.695 7 C 0.578 3.422 8 O -0.551 6.551 9 C -0.010 4.010 10 C -0.120 4.120 11 S 0.254 5.746 12 C -0.118 4.118 13 C 0.013 3.987 14 N -0.470 5.470 15 C 0.177 3.823 16 N -0.397 5.397 17 C -0.115 4.115 18 C -0.128 4.128 19 C 0.179 3.821 20 N -0.596 5.596 21 C -0.248 4.248 22 H 0.076 0.924 23 C -0.037 4.037 24 N -0.928 5.928 25 Si 0.946 3.054 26 H -0.266 1.266 27 H -0.298 1.298 28 H -0.297 1.297 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.402 0.598 33 H 0.226 0.774 34 H 0.211 0.789 35 H 0.207 0.793 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.001 0.999 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -9.570 16.893 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.059 0.941 4 C 0.033 3.967 5 H 0.111 0.889 6 N -0.347 5.347 7 C 0.362 3.638 8 O -0.431 6.431 9 C -0.123 4.123 10 C -0.261 4.261 11 S 0.515 5.485 12 C -0.343 4.343 13 C -0.146 4.146 14 N -0.185 5.185 15 C -0.105 4.105 16 N -0.077 5.077 17 C -0.153 4.153 18 C -0.167 4.167 19 C 0.053 3.947 20 N -0.320 5.320 21 C -0.378 4.378 22 H 0.093 0.907 23 C -0.233 4.233 24 N -0.574 5.574 25 Si 0.776 3.224 26 H -0.190 1.190 27 H -0.225 1.225 28 H -0.224 1.224 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.241 0.759 33 H 0.243 0.757 34 H 0.228 0.772 35 H 0.223 0.777 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.019 0.981 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.503 -10.269 17.456 20.746 hybrid contribution 0.288 1.027 -1.985 2.254 sum -4.214 -9.241 15.471 18.507 Atomic orbital electron populations 1.21713 0.94490 1.01170 1.01254 1.20883 0.94321 0.93895 0.86098 0.94100 1.21548 0.93141 0.82459 0.99534 0.88878 1.46201 1.60719 1.19053 1.08733 1.17129 0.78325 0.84022 0.84310 1.90833 1.52106 1.66353 1.33758 1.19146 1.12759 0.95088 0.85306 1.26254 0.99281 0.98716 1.01818 1.84236 1.68245 1.08321 0.87742 1.25083 1.15027 0.90881 1.03290 1.22372 1.07057 1.01308 0.83833 1.70178 1.15131 1.00888 1.32272 1.25333 1.07672 1.00578 0.76956 1.44239 1.45264 1.11683 1.06541 1.21736 0.94972 1.01058 0.97562 1.21966 0.99931 0.98629 0.96173 1.20574 0.83298 0.96002 0.94783 1.44336 1.02925 1.65350 1.19367 1.19384 0.95481 1.36600 0.86381 0.90693 1.25628 0.98694 1.00420 0.98574 1.70152 1.25909 1.44890 1.16471 0.85529 0.78947 0.78178 0.79794 1.19021 1.22526 1.22383 0.91359 0.93119 0.93548 0.75855 0.75720 0.77206 0.77714 0.90543 0.92200 0.93797 0.91730 0.92890 0.98099 0.94378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 7.73 71.98 0.56 -3.81 16 2 C 0.15 5.68 3.20 44.98 0.14 5.83 16 3 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.14 4.47 2.36 45.07 0.11 4.58 16 5 H 0.09 2.86 7.53 -2.39 -0.02 2.84 16 6 N -0.70 -21.95 3.45 -446.48 -1.54 -23.49 16 7 C 0.58 17.35 7.71 86.33 0.67 18.02 16 8 O -0.55 -17.94 16.23 -4.53 -0.07 -18.02 16 9 C -0.01 -0.25 6.70 39.07 0.26 0.01 16 10 C -0.12 -2.23 10.62 66.74 0.71 -1.52 16 11 S 0.25 3.89 23.33 -56.49 -1.32 2.58 16 12 C -0.12 -2.85 7.81 83.61 0.65 -2.19 16 13 C 0.01 0.32 11.93 83.95 1.00 1.32 16 14 N -0.47 -15.51 11.21 -197.66 -2.22 -17.73 16 15 C 0.18 5.77 11.90 179.53 2.14 7.91 16 16 N -0.40 -11.15 3.20 -344.99 -1.10 -12.25 16 17 C -0.11 -3.65 5.58 30.62 0.17 -3.48 16 18 C -0.13 -4.58 5.93 30.67 0.18 -4.40 16 19 C 0.18 8.00 5.28 86.36 0.46 8.45 16 20 N -0.60 -26.35 2.64 -675.24 -1.78 -28.13 16 21 C -0.25 -12.18 8.57 84.03 0.72 -11.46 16 22 H 0.08 3.57 6.23 -2.91 -0.02 3.55 16 23 C -0.04 -1.94 4.92 84.86 0.42 -1.52 16 24 N -0.93 -52.44 11.27 21.65 0.24 -52.19 16 25 Si 0.95 43.95 29.58 68.60 2.03 45.98 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 31 H 0.05 1.59 6.37 -2.39 -0.02 1.58 16 32 H 0.40 13.51 4.16 -92.71 -0.39 13.12 16 33 H 0.23 3.03 7.94 -2.91 -0.02 3.00 16 34 H 0.21 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.21 7.21 6.07 -2.91 -0.02 7.19 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.62 7.53 -2.38 -0.02 1.60 16 39 H 0.06 2.12 8.14 -2.38 -0.02 2.11 16 40 H 0.05 2.73 6.17 -2.39 -0.01 2.72 16 41 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -62.64 347.37 3.10 -59.54 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.68 Total: 25.98 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 8.18 Total: 17.74 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -6.40 Total: -133.80 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.07 Total: -18.02 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.32 Total: 2.58 kcal Total: -62.64 3.10 -59.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993915312.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.046 kcal (2) G-P(sol) polarization free energy of solvation -62.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds