Wall clock time and date at job start Tue Mar 31 2020 17:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.30910 * 125.08828 * 2 1 4 4 N 1.37484 * 116.32006 * 180.02562 * 3 2 1 5 5 C 1.38934 * 139.53462 * 180.37600 * 4 3 2 6 6 C 1.34332 * 107.12067 * 180.02562 * 5 4 3 7 7 C 1.50706 * 125.80741 * 179.84988 * 6 5 4 8 8 C 1.50695 * 109.47238 * 124.71587 * 7 6 5 9 9 O 1.21280 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00100 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.85278 * 336.19794 * 11 10 8 13 13 C 1.53784 * 113.61569 * 107.50305 * 11 10 8 14 14 C 1.53783 * 87.08096 * 89.11408 * 13 11 10 15 15 H 1.09000 * 113.69655 * 270.87668 * 14 13 11 16 16 N 1.46503 * 113.61283 * 139.97876 * 14 13 11 17 17 C 1.36939 * 119.99390 * 107.50826 * 16 14 13 18 18 H 1.07991 * 120.00625 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99471 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00483 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46956 * 89.99738 * 21 19 17 23 23 H 1.48500 * 109.46947 * 210.00061 * 21 19 17 24 24 H 1.48500 * 109.46948 * 330.00161 * 21 19 17 25 25 C 1.53781 * 113.61446 * 204.99912 * 11 10 8 26 26 N 1.33877 * 108.39020 * 359.58574 * 6 5 4 27 27 C 1.32353 * 109.13451 * 0.26465 * 26 6 5 28 28 S 1.75778 * 125.09305 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47070 * 300.01691 * 1 2 3 31 31 H 1.08993 * 109.47808 * 60.01670 * 1 2 3 32 32 H 1.07999 * 121.84137 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.44031 * 359.94419 * 5 4 3 34 34 H 1.08997 * 109.47279 * 244.72136 * 7 6 5 35 35 H 1.08998 * 109.46666 * 4.71675 * 7 6 5 36 36 H 0.97005 * 119.99845 * 0.02562 * 10 8 7 37 37 H 1.08996 * 113.61991 * 203.66478 * 13 11 10 38 38 H 1.08998 * 113.60977 * 334.57241 * 13 11 10 39 39 H 0.96999 * 120.00329 * 287.50341 * 16 14 13 40 40 H 0.96994 * 120.00397 * 180.02562 * 20 19 17 41 41 H 1.09004 * 113.61519 * 25.43733 * 25 11 10 42 42 H 1.09005 * 113.61445 * 156.33267 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2595 1.0712 0.0000 4 7 3.6183 0.8616 -0.0006 5 6 4.8004 1.5916 0.0051 6 6 5.8114 0.7071 -0.0008 7 6 7.2798 1.0464 -0.0010 8 6 7.9529 0.3651 1.1625 9 8 7.3043 -0.3281 1.9172 10 7 9.2757 0.5262 1.3643 11 6 9.9300 -0.1357 2.4956 12 1 9.2397 -0.3699 3.3060 13 6 10.8243 -1.3174 2.0849 14 6 11.9701 -0.3008 1.9481 15 1 12.0423 0.1472 0.9571 16 7 13.2566 -0.7965 2.4435 17 6 14.2497 -1.1253 1.5598 18 1 14.0845 -1.0196 0.4978 19 6 15.4686 -1.5955 2.0291 20 7 15.6700 -1.7248 3.3233 21 14 16.8231 -2.0448 0.8237 22 1 17.6668 -0.8515 0.5599 23 1 17.6613 -3.1258 1.4015 24 1 16.2178 -2.5140 -0.4486 25 6 11.2131 0.5705 2.9643 26 7 5.2928 -0.5271 -0.0006 27 6 3.9719 -0.4427 -0.0005 28 16 2.5175 -1.4382 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5141 0.8899 31 1 -0.3634 0.5135 -0.8900 32 1 1.8363 2.0648 -0.0004 33 1 4.8897 2.6679 0.0116 34 1 7.7313 0.7054 -0.9326 35 1 7.4032 2.1256 0.0889 36 1 9.7944 1.0809 0.7608 37 1 10.9792 -2.0453 2.8812 38 1 10.5336 -1.7771 1.1403 39 1 13.4050 -0.8917 3.3973 40 1 16.5218 -2.0530 3.6512 41 1 11.2364 1.6348 2.7299 42 1 11.4743 0.3588 4.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020348778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:38 Heat of formation + Delta-G solvation = 96.597518 kcal Electronic energy + Delta-G solvation = -24686.540431 eV Core-core repulsion = 20988.913919 eV Total energy + Delta-G solvation = -3697.626513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.88198 -39.81628 -38.00706 -37.12058 -33.94203 -33.06437 -32.52520 -31.30186 -29.86670 -29.00487 -26.38187 -25.04808 -24.47499 -23.88386 -22.31864 -21.35985 -20.82442 -19.63382 -18.85420 -18.76865 -17.22912 -16.95924 -16.37292 -16.07401 -15.67908 -15.34712 -15.00776 -14.68232 -14.33515 -14.13356 -14.03831 -13.84399 -13.69993 -13.34467 -13.08190 -12.78706 -12.59363 -12.54693 -11.89699 -11.78613 -11.61970 -11.49294 -11.47940 -10.87375 -10.73901 -10.64627 -10.27937 -10.24696 -10.17963 -9.86995 -9.64907 -9.50925 -8.92915 -8.86711 -8.65967 -7.97301 -6.94607 -5.77032 -3.05762 0.55714 0.59348 1.26584 1.89957 2.22754 2.60131 2.83617 3.42588 3.43873 3.49263 3.51075 4.01505 4.22104 4.41129 4.59260 4.60296 4.68748 4.89910 4.93221 5.00908 5.11176 5.14800 5.24861 5.28435 5.32301 5.41320 5.50755 5.56359 5.77925 5.92798 5.99205 6.17182 6.25678 6.30801 6.39377 6.54340 6.61034 6.71896 6.78124 7.16282 7.55809 7.70243 7.73453 8.41407 8.46281 9.52613 10.10658 10.45006 11.45355 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.001760 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.343645 B =15901.326833 C =16058.892685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.193 4.193 3 C 0.042 3.958 4 N -0.406 5.406 5 C -0.049 4.049 6 C 0.067 3.933 7 C -0.058 4.058 8 C 0.515 3.485 9 O -0.523 6.523 10 N -0.710 5.710 11 C 0.118 3.882 12 H 0.093 0.907 13 C -0.176 4.176 14 C 0.167 3.833 15 H 0.074 0.926 16 N -0.713 5.713 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.159 4.159 26 N -0.424 5.424 27 C 0.135 3.865 28 S 0.186 5.814 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.399 0.601 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.386 0.614 40 H 0.256 0.744 41 H 0.063 0.937 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.523 10.365 -8.559 35.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.312 4.312 3 C -0.087 4.087 4 N -0.085 5.085 5 C -0.182 4.182 6 C -0.065 4.065 7 C -0.099 4.099 8 C 0.300 3.700 9 O -0.398 6.398 10 N -0.362 5.362 11 C 0.013 3.987 12 H 0.111 0.889 13 C -0.218 4.218 14 C 0.054 3.946 15 H 0.092 0.908 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.199 4.199 26 N -0.146 5.146 27 C -0.231 4.231 28 S 0.436 5.564 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.196 0.804 33 H 0.201 0.799 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -32.661 7.766 -8.145 34.545 hybrid contribution 1.046 2.170 -0.550 2.471 sum -31.614 9.936 -8.695 34.261 Atomic orbital electron populations 1.20278 0.85363 1.03924 1.03625 1.23839 1.01411 0.95214 1.10781 1.20172 0.80184 1.01557 1.06759 1.43744 1.05195 1.08062 1.51517 1.22432 0.81388 0.98378 1.15964 1.19956 0.94647 0.88167 1.03699 1.19981 0.88649 1.01958 0.99334 1.20249 0.82033 0.81549 0.86143 1.90740 1.64098 1.38326 1.46596 1.45674 1.08297 1.51500 1.30713 1.21767 0.93203 0.95001 0.88772 0.88855 1.24288 0.98183 0.97803 1.01535 1.21628 0.85277 0.92241 0.95411 0.90842 1.42407 1.09804 1.76255 1.06587 1.19303 0.92401 1.36166 0.89654 0.91104 1.24767 0.98083 1.02156 0.95911 1.69655 1.24542 1.52425 1.11387 0.86188 0.82135 0.77750 0.80104 1.21719 1.21764 1.20737 1.23855 0.95005 0.99346 1.01690 1.70531 1.01425 1.23945 1.18700 1.26165 0.97831 0.86655 1.12450 1.84824 0.87208 1.02373 1.82042 0.90442 0.89865 0.89882 0.80408 0.79912 0.87065 0.87201 0.76655 0.89736 0.92388 0.78037 0.93463 0.91815 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.20 10.36 36.00 0.37 0.18 16 2 C -0.19 -1.24 6.42 -36.00 -0.23 -1.47 16 3 C 0.04 0.30 11.11 -16.71 -0.19 0.12 16 4 N -0.41 -4.35 3.19 -63.77 -0.20 -4.55 16 5 C -0.05 -0.50 11.91 -15.71 -0.19 -0.69 16 6 C 0.07 0.86 5.84 -83.08 -0.49 0.38 16 7 C -0.06 -0.59 6.26 -29.03 -0.18 -0.77 16 8 C 0.52 7.40 7.82 -10.99 -0.09 7.32 16 9 O -0.52 -10.04 15.16 5.56 0.08 -9.96 16 10 N -0.71 -9.38 5.26 -53.02 -0.28 -9.66 16 11 C 0.12 1.88 4.32 -67.12 -0.29 1.58 16 12 H 0.09 1.60 7.46 -51.93 -0.39 1.21 16 13 C -0.18 -3.26 7.68 -25.92 -0.20 -3.46 16 14 C 0.17 3.25 4.36 -67.12 -0.29 2.96 16 15 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 16 N -0.71 -17.87 5.40 -52.63 -0.28 -18.16 16 17 C -0.24 -6.78 9.97 -15.06 -0.15 -6.94 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.16 -2.57 7.58 -25.92 -0.20 -2.77 16 26 N -0.42 -6.73 10.68 -9.77 -0.10 -6.83 16 27 C 0.14 1.80 8.92 -88.71 -0.79 1.01 16 28 S 0.19 1.75 23.35 -107.50 -2.51 -0.76 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.40 4.14 8.70 -40.82 -0.36 3.78 16 37 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.39 10.27 7.92 -40.82 -0.32 9.95 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -37.88 372.69 -10.66 -48.54 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -5.68 Total: 8.90 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -3.00 Total: -3.02 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -0.15 Total: -66.74 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.88 -10.66 -48.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020348778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.140 kcal (2) G-P(sol) polarization free energy of solvation -37.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds