Wall clock time and date at job start Tue Mar 31 2020 17:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.30910 * 125.08828 * 2 1 4 4 N 1.37484 * 116.32006 * 180.02562 * 3 2 1 5 5 C 1.38934 * 139.53462 * 180.37600 * 4 3 2 6 6 C 1.34332 * 107.12067 * 180.02562 * 5 4 3 7 7 C 1.50706 * 125.80741 * 179.84988 * 6 5 4 8 8 C 1.50695 * 109.47238 * 124.71587 * 7 6 5 9 9 O 1.21280 * 119.99964 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00067 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00100 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.85278 * 336.19794 * 11 10 8 13 13 C 1.53784 * 113.61569 * 107.50305 * 11 10 8 14 14 C 1.53783 * 87.08096 * 89.11408 * 13 11 10 15 15 H 1.09000 * 113.69655 * 270.87668 * 14 13 11 16 16 N 1.46503 * 113.61283 * 139.97876 * 14 13 11 17 17 C 1.36939 * 119.99390 * 107.50826 * 16 14 13 18 18 H 1.07991 * 120.00625 * 359.97438 * 17 16 14 19 19 C 1.38817 * 119.99471 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00483 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46956 * 89.99738 * 21 19 17 23 23 H 1.48500 * 109.46947 * 210.00061 * 21 19 17 24 24 H 1.48500 * 109.46948 * 330.00161 * 21 19 17 25 25 C 1.53781 * 113.61446 * 204.99912 * 11 10 8 26 26 N 1.33877 * 108.39020 * 359.58574 * 6 5 4 27 27 C 1.32353 * 109.13451 * 0.26465 * 26 6 5 28 28 S 1.75778 * 125.09305 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47070 * 300.01691 * 1 2 3 31 31 H 1.08993 * 109.47808 * 60.01670 * 1 2 3 32 32 H 1.07999 * 121.84137 * 359.97438 * 3 2 1 33 33 H 1.08002 * 126.44031 * 359.94419 * 5 4 3 34 34 H 1.08997 * 109.47279 * 244.72136 * 7 6 5 35 35 H 1.08998 * 109.46666 * 4.71675 * 7 6 5 36 36 H 0.97005 * 119.99845 * 0.02562 * 10 8 7 37 37 H 1.08996 * 113.61991 * 203.66478 * 13 11 10 38 38 H 1.08998 * 113.60977 * 334.57241 * 13 11 10 39 39 H 0.96999 * 120.00329 * 287.50341 * 16 14 13 40 40 H 0.96994 * 120.00397 * 180.02562 * 20 19 17 41 41 H 1.09004 * 113.61519 * 25.43733 * 25 11 10 42 42 H 1.09005 * 113.61445 * 156.33267 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2595 1.0712 0.0000 4 7 3.6183 0.8616 -0.0006 5 6 4.8004 1.5916 0.0051 6 6 5.8114 0.7071 -0.0008 7 6 7.2798 1.0464 -0.0010 8 6 7.9529 0.3651 1.1625 9 8 7.3043 -0.3281 1.9172 10 7 9.2757 0.5262 1.3643 11 6 9.9300 -0.1357 2.4956 12 1 9.2397 -0.3699 3.3060 13 6 10.8243 -1.3174 2.0849 14 6 11.9701 -0.3008 1.9481 15 1 12.0423 0.1472 0.9571 16 7 13.2566 -0.7965 2.4435 17 6 14.2497 -1.1253 1.5598 18 1 14.0845 -1.0196 0.4978 19 6 15.4686 -1.5955 2.0291 20 7 15.6700 -1.7248 3.3233 21 14 16.8231 -2.0448 0.8237 22 1 17.6668 -0.8515 0.5599 23 1 17.6613 -3.1258 1.4015 24 1 16.2178 -2.5140 -0.4486 25 6 11.2131 0.5705 2.9643 26 7 5.2928 -0.5271 -0.0006 27 6 3.9719 -0.4427 -0.0005 28 16 2.5175 -1.4382 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5141 0.8899 31 1 -0.3634 0.5135 -0.8900 32 1 1.8363 2.0648 -0.0004 33 1 4.8897 2.6679 0.0116 34 1 7.7313 0.7054 -0.9326 35 1 7.4032 2.1256 0.0889 36 1 9.7944 1.0809 0.7608 37 1 10.9792 -2.0453 2.8812 38 1 10.5336 -1.7771 1.1403 39 1 13.4050 -0.8917 3.3973 40 1 16.5218 -2.0530 3.6512 41 1 11.2364 1.6348 2.7299 42 1 11.4743 0.3588 4.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020348778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:37 Heat of formation + Delta-G solvation = 70.365067 kcal Electronic energy + Delta-G solvation = -24687.677956 eV Core-core repulsion = 20988.913919 eV Total energy + Delta-G solvation = -3698.764037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62747 -41.07594 -39.31781 -37.85440 -35.73201 -34.15035 -33.53762 -32.29823 -31.61325 -29.70427 -27.08026 -26.53516 -26.24490 -24.64463 -23.88279 -22.40010 -21.62594 -20.46676 -20.29278 -19.45426 -19.12434 -18.14295 -17.20522 -16.98438 -16.79031 -16.65636 -16.17483 -15.82556 -15.58402 -15.47010 -14.96222 -14.68877 -14.51916 -14.33922 -14.14052 -13.71267 -13.68565 -13.39280 -13.31497 -13.22695 -13.04641 -12.79198 -12.57493 -12.22958 -12.15813 -12.05355 -11.81987 -11.72384 -11.35707 -11.18784 -11.14383 -10.83279 -10.82124 -9.95422 -9.63264 -8.98093 -8.71039 -7.94018 -5.22545 -0.12763 -0.04911 0.66945 1.24465 1.48188 1.49924 1.58213 1.58634 1.74080 1.74267 2.37068 2.57314 3.35372 3.37524 3.52161 3.73561 3.86011 3.97816 4.00721 4.01486 4.19021 4.22064 4.34596 4.34772 4.40121 4.56903 4.67540 4.76446 4.78911 4.82151 4.91738 4.94875 5.06871 5.14871 5.22704 5.24323 5.30443 5.43779 5.52176 5.75850 5.90259 6.27943 6.68373 6.77035 7.34016 7.39698 8.10858 8.33358 9.29309 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.033312 B = 0.001760 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.343645 B =15901.326833 C =16058.892685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.174 4.174 3 C 0.026 3.974 4 N -0.407 5.407 5 C -0.034 4.034 6 C 0.030 3.970 7 C -0.048 4.048 8 C 0.512 3.488 9 O -0.577 6.577 10 N -0.698 5.698 11 C 0.136 3.864 12 H 0.081 0.919 13 C -0.176 4.176 14 C 0.155 3.845 15 H 0.087 0.913 16 N -0.728 5.728 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.284 1.284 23 H -0.299 1.299 24 H -0.270 1.270 25 C -0.139 4.139 26 N -0.483 5.483 27 C 0.098 3.902 28 S 0.158 5.842 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.220 0.780 33 H 0.228 0.772 34 H 0.126 0.874 35 H 0.158 0.842 36 H 0.417 0.583 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.092 0.908 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.504 13.334 -10.304 38.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.293 4.293 3 C -0.101 4.101 4 N -0.086 5.086 5 C -0.167 4.167 6 C -0.102 4.102 7 C -0.088 4.088 8 C 0.300 3.700 9 O -0.456 6.456 10 N -0.351 5.351 11 C 0.029 3.971 12 H 0.099 0.901 13 C -0.218 4.218 14 C 0.046 3.954 15 H 0.105 0.895 16 N -0.365 5.365 17 C -0.376 4.376 18 H 0.097 0.903 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.211 1.211 23 H -0.225 1.225 24 H -0.195 1.195 25 C -0.179 4.179 26 N -0.206 5.206 27 C -0.268 4.268 28 S 0.407 5.593 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.236 0.764 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.176 0.824 36 H 0.254 0.746 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -34.691 10.783 -9.952 37.666 hybrid contribution 1.490 1.238 -0.023 1.938 sum -33.201 12.021 -9.974 36.692 Atomic orbital electron populations 1.20480 0.82416 1.04779 1.05442 1.24346 1.02774 0.93050 1.09150 1.20841 0.78703 1.03510 1.07015 1.44058 1.06643 1.07165 1.50716 1.23098 0.80540 0.99873 1.13186 1.20475 0.96323 0.87936 1.05439 1.20093 0.87024 1.04199 0.97480 1.21078 0.81807 0.80646 0.86497 1.90724 1.65274 1.40763 1.48829 1.45548 1.08313 1.51111 1.30100 1.21409 0.92673 0.93686 0.89300 0.90131 1.24170 0.98883 0.98159 1.00609 1.21960 0.83267 0.93229 0.96989 0.89492 1.42608 1.11257 1.76848 1.05761 1.19730 0.92897 1.34552 0.90431 0.90285 1.25588 1.00627 1.03251 0.97512 1.69815 1.24808 1.54244 1.13231 0.85142 0.79182 0.77176 0.78270 1.21103 1.22541 1.19532 1.23643 0.93527 1.00392 1.00311 1.70399 1.03222 1.26390 1.20633 1.26527 0.97971 0.88582 1.13709 1.84808 0.87341 1.04850 1.82304 0.90104 0.88060 0.87720 0.76383 0.75577 0.85588 0.82415 0.74560 0.91763 0.93042 0.79463 0.94088 0.88979 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.36 71.24 0.74 0.57 16 2 C -0.17 -1.91 6.42 25.74 0.17 -1.75 16 3 C 0.03 0.30 11.11 83.86 0.93 1.23 16 4 N -0.41 -8.13 3.19 -355.68 -1.13 -9.26 16 5 C -0.03 -0.61 11.91 82.67 0.98 0.37 16 6 C 0.03 0.73 5.84 41.36 0.24 0.97 16 7 C -0.05 -0.86 6.26 29.10 0.18 -0.68 16 8 C 0.51 14.22 7.82 87.66 0.69 14.91 16 9 O -0.58 -22.66 15.16 -3.03 -0.05 -22.71 16 10 N -0.70 -17.22 5.26 -440.05 -2.32 -19.54 16 11 C 0.14 4.24 4.32 45.52 0.20 4.43 16 12 H 0.08 2.79 7.46 -2.39 -0.02 2.77 16 13 C -0.18 -6.59 7.68 31.12 0.24 -6.36 16 14 C 0.16 5.96 4.36 45.52 0.20 6.15 16 15 H 0.09 3.10 8.10 -2.39 -0.02 3.08 16 16 N -0.73 -36.71 5.40 -320.44 -1.73 -38.44 16 17 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 18 H 0.08 4.16 7.83 -2.92 -0.02 4.14 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 21 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 22 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 25 C -0.14 -4.31 7.58 31.12 0.24 -4.07 16 26 N -0.48 -15.83 10.68 -184.82 -1.97 -17.81 16 27 C 0.10 2.67 8.92 179.68 1.60 4.27 16 28 S 0.16 3.06 23.35 -56.49 -1.32 1.74 16 29 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 31 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.22 0.60 8.06 -2.91 -0.02 0.57 16 33 H 0.23 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.16 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.42 7.37 8.70 -92.70 -0.81 6.56 16 37 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.37 20.35 7.92 -92.71 -0.73 19.62 16 40 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 42 H 0.08 2.74 8.12 -2.38 -0.02 2.72 16 Total: -1.00 -87.41 372.69 1.02 -86.39 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.47 Total: 27.60 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 7.71 Total: 3.33 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -6.87 Total: -144.74 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.32 Total: 1.74 kcal Total: -87.41 1.02 -86.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020348778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.752 kcal (2) G-P(sol) polarization free energy of solvation -87.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds