Wall clock time and date at job start Tue Mar 31 2020 17:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29881 * 125.73452 * 2 1 4 4 N 1.39772 * 109.43091 * 179.88175 * 3 2 1 5 5 C 1.46499 * 125.95368 * 180.12965 * 4 3 2 6 6 C 1.36735 * 108.10253 * 0.38588 * 4 3 2 7 7 S 1.75883 * 142.80885 * 179.77646 * 6 4 3 8 8 C 1.75586 * 91.47214 * 180.02562 * 7 6 4 9 9 C 1.46587 * 124.78643 * 179.97438 * 8 7 6 10 10 O 1.21699 * 119.99931 * 180.02562 * 9 8 7 11 11 N 1.34781 * 120.00199 * 0.03974 * 9 8 7 12 12 C 1.46496 * 120.00209 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.85184 * 334.67219 * 12 11 9 14 14 C 1.53781 * 113.61116 * 105.86255 * 12 11 9 15 15 C 1.54054 * 86.98594 * 89.16400 * 14 12 11 16 16 H 1.08995 * 113.61466 * 270.88818 * 15 14 12 17 17 N 1.46496 * 113.69652 * 139.98610 * 15 14 12 18 18 C 1.36941 * 119.99965 * 107.47093 * 17 15 14 19 19 H 1.08001 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00222 * 180.02562 * 18 17 15 21 21 N 1.31612 * 119.99918 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99804 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46949 * 90.00182 * 22 20 18 24 24 H 1.48498 * 109.47008 * 210.00114 * 22 20 18 25 25 H 1.48500 * 109.47374 * 330.00435 * 22 20 18 26 26 C 1.53779 * 113.61616 * 203.47200 * 12 11 9 27 27 C 1.34116 * 110.42333 * 359.97438 * 8 7 6 28 28 C 1.38532 * 107.41240 * 359.77740 * 6 4 3 29 29 H 1.08999 * 109.47015 * 269.69510 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.68662 * 1 2 3 31 31 H 1.09000 * 109.47248 * 149.69380 * 1 2 3 32 32 H 1.09007 * 109.47066 * 270.30586 * 5 4 3 33 33 H 1.09007 * 109.46588 * 30.30035 * 5 4 3 34 34 H 1.08991 * 109.47873 * 150.30308 * 5 4 3 35 35 H 0.97000 * 119.99430 * 0.02562 * 11 9 8 36 36 H 1.09001 * 113.61634 * 203.66676 * 14 12 11 37 37 H 1.09000 * 113.61754 * 334.56859 * 14 12 11 38 38 H 0.97008 * 120.00497 * 287.47105 * 17 15 14 39 39 H 0.97009 * 120.00023 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.61810 * 25.43696 * 26 12 11 41 41 H 1.09007 * 113.61228 * 156.34085 * 26 12 11 42 42 H 1.08002 * 122.34297 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0543 0.0000 4 7 3.6071 0.6619 0.0027 5 6 4.7656 1.5587 0.0063 6 6 3.6501 -0.7047 -0.0043 7 16 4.7567 -2.0718 -0.0117 8 6 3.4208 -3.2112 -0.0179 9 6 3.5658 -4.6699 -0.0263 10 8 2.5772 -5.3796 -0.0306 11 7 4.7940 -5.2251 -0.0291 12 6 4.9389 -6.6828 -0.0369 13 1 4.0772 -7.1962 0.3898 14 6 5.3834 -7.2503 -1.3953 15 6 6.8327 -7.0555 -0.9107 16 1 7.2426 -6.0728 -1.1436 17 7 7.7310 -8.1502 -1.2859 18 6 8.6713 -7.9600 -2.2632 19 1 8.7502 -7.0030 -2.7576 20 6 9.5222 -8.9974 -2.6191 21 7 10.4261 -8.8143 -3.5580 22 14 9.3851 -10.6527 -1.7644 23 1 8.4287 -11.5144 -2.5048 24 1 10.7184 -11.3059 -1.7338 25 1 8.8991 -10.4540 -0.3753 26 6 6.2858 -7.1710 0.5220 27 6 2.2491 -2.5587 -0.0138 28 6 2.3419 -1.1606 -0.0062 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5090 31 1 -0.3634 -0.8872 -0.5186 32 1 5.0519 1.7864 -1.0206 33 1 4.5085 2.4822 0.5251 34 1 5.5982 1.0748 0.5168 35 1 5.5819 -4.6593 -0.0251 36 1 5.1090 -8.2948 -1.5431 37 1 5.1157 -6.6176 -2.2416 38 1 7.6599 -9.0099 -0.8421 39 1 11.0210 -9.5392 -3.8065 40 1 6.7461 -6.4745 1.2226 41 1 6.2577 -8.1940 0.8974 42 1 1.3004 -3.0748 -0.0161 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020448652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:27 Heat of formation + Delta-G solvation = 103.676472 kcal Electronic energy + Delta-G solvation = -25007.642403 eV Core-core repulsion = 21310.322857 eV Total energy + Delta-G solvation = -3697.319546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.73060 -40.07542 -38.18397 -35.92359 -34.20680 -34.13856 -32.67481 -30.58532 -30.08531 -29.30091 -26.31127 -25.26875 -24.86038 -23.75352 -22.61258 -21.74986 -20.46279 -19.93382 -19.19259 -18.28323 -17.50796 -16.86245 -16.27356 -15.98948 -15.85920 -15.25257 -14.92050 -14.64659 -14.53883 -14.14305 -14.04133 -13.76339 -13.56979 -13.24634 -13.07245 -12.81373 -12.66720 -12.33277 -12.29262 -12.22865 -12.02901 -11.73520 -11.34764 -11.32027 -11.02652 -10.90421 -10.44323 -10.23449 -10.16477 -10.10344 -9.92924 -9.60290 -9.03788 -8.92007 -8.76764 -8.18546 -7.31180 -5.81732 -3.17743 0.44161 0.50561 1.28499 1.44328 2.04440 2.40414 3.02450 3.14644 3.34758 3.37813 3.43094 3.90036 4.25215 4.34368 4.55006 4.65844 4.68768 4.73140 4.88618 4.92548 5.06855 5.11399 5.19269 5.23879 5.34144 5.38601 5.43361 5.66511 5.67181 5.73064 5.75343 5.92827 6.04328 6.08637 6.15885 6.24175 6.36795 6.49033 6.55056 6.91344 7.10136 7.42686 7.93868 8.10315 8.37680 9.15209 9.87795 10.07274 11.36332 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.002300 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.310986 B =12171.050735 C =13055.401438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.133 3.867 3 N -0.266 5.266 4 N -0.354 5.354 5 C 0.102 3.898 6 C 0.027 3.973 7 S 0.197 5.803 8 C -0.264 4.264 9 C 0.596 3.404 10 O -0.531 6.531 11 N -0.702 5.702 12 C 0.118 3.882 13 H 0.100 0.900 14 C -0.176 4.176 15 C 0.172 3.828 16 H 0.082 0.918 17 N -0.736 5.736 18 C -0.250 4.250 19 H 0.091 0.909 20 C 0.005 3.995 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.162 4.162 27 C 0.021 3.979 28 C -0.226 4.226 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.397 0.603 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.672 20.658 10.798 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.042 4.042 3 N -0.084 5.084 4 N -0.140 5.140 5 C -0.038 4.038 6 C -0.212 4.212 7 S 0.450 5.550 8 C -0.384 4.384 9 C 0.382 3.618 10 O -0.409 6.409 11 N -0.352 5.352 12 C 0.013 3.987 13 H 0.118 0.882 14 C -0.218 4.218 15 C 0.060 3.940 16 H 0.100 0.900 17 N -0.375 5.375 18 C -0.380 4.380 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.202 4.202 27 C -0.012 4.012 28 C -0.242 4.242 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.232 0.768 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.455 21.472 10.598 28.499 hybrid contribution -0.861 -1.512 0.432 1.793 sum -16.316 19.961 11.030 28.041 Atomic orbital electron populations 1.20318 0.85443 1.04120 1.03730 1.22399 0.96899 0.87861 0.96995 1.76737 0.85760 1.22626 1.23233 1.47864 1.05144 1.00724 1.60267 1.21990 0.83842 0.94057 1.03954 1.24671 1.00327 0.90385 1.05835 1.84040 1.03593 0.89490 1.77848 1.23447 0.96606 0.97018 1.21283 1.16802 0.83718 0.85021 0.76248 1.90827 1.37654 1.61854 1.50537 1.45557 1.07148 1.07863 1.74646 1.21828 0.98765 0.78892 0.99235 0.88195 1.24331 1.00425 1.01252 0.95836 1.21666 0.88325 0.92975 0.91014 0.90048 1.42741 1.39619 1.10484 1.44691 1.19123 1.08384 0.99521 1.10924 0.89154 1.24702 0.97956 0.97875 0.98545 1.69702 1.22861 1.32476 1.32884 0.86546 0.77114 0.85383 0.79454 1.20993 1.21703 1.20266 1.23890 0.94893 1.01863 0.99580 1.19477 0.98855 0.90476 0.92420 1.18911 0.91318 0.94209 1.19760 0.89704 0.90205 0.89654 0.90227 0.88592 0.89293 0.76803 0.89472 0.91800 0.80356 0.92995 0.91331 0.89008 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.46 36.01 0.38 -0.09 16 2 C 0.13 1.31 7.28 -81.58 -0.59 0.72 16 3 N -0.27 -2.87 12.44 34.16 0.42 -2.44 16 4 N -0.35 -3.47 4.05 -66.02 -0.27 -3.74 16 5 C 0.10 0.57 11.48 59.85 0.69 1.25 16 6 C 0.03 0.28 8.01 -15.26 -0.12 0.16 16 7 S 0.20 1.88 22.27 -107.50 -2.39 -0.51 16 8 C -0.26 -3.10 6.33 -37.67 -0.24 -3.33 16 9 C 0.60 8.30 7.78 -12.89 -0.10 8.20 16 10 O -0.53 -8.97 16.35 5.19 0.08 -8.88 16 11 N -0.70 -9.07 5.26 -54.35 -0.29 -9.36 16 12 C 0.12 1.68 4.29 -67.12 -0.29 1.39 16 13 H 0.10 1.46 7.50 -51.93 -0.39 1.07 16 14 C -0.18 -2.92 7.70 -25.77 -0.20 -3.12 16 15 C 0.17 3.10 4.37 -66.97 -0.29 2.81 16 16 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 17 N -0.74 -16.80 5.21 -52.50 -0.27 -17.08 16 18 C -0.25 -6.88 10.45 -15.06 -0.16 -7.04 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 22 Si 0.88 21.74 27.74 -169.99 -4.71 17.02 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 26 C -0.16 -2.35 7.57 -25.92 -0.20 -2.54 16 27 C 0.02 0.23 9.84 -40.33 -0.40 -0.17 16 28 C -0.23 -2.47 6.55 -107.25 -0.70 -3.17 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.41 8.14 -51.92 -0.42 -0.02 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.40 4.44 7.75 -40.82 -0.32 4.12 16 36 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.36 8.14 5.79 -40.82 -0.24 7.90 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.30 8.12 -51.93 -0.42 0.88 16 42 H 0.16 1.56 7.97 -52.49 -0.42 1.15 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -35.02 370.51 -8.99 -44.01 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.60 Total: 8.39 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.32 Total: -4.88 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: 0.37 Total: -60.73 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.39 Total: -0.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.02 -8.99 -44.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020448652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.685 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds