Wall clock time and date at job start Tue Mar 31 2020 17:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29881 * 125.73452 * 2 1 4 4 N 1.39772 * 109.43091 * 179.88175 * 3 2 1 5 5 C 1.46499 * 125.95368 * 180.12965 * 4 3 2 6 6 C 1.36735 * 108.10253 * 0.38588 * 4 3 2 7 7 S 1.75883 * 142.80885 * 179.77646 * 6 4 3 8 8 C 1.75586 * 91.47214 * 180.02562 * 7 6 4 9 9 C 1.46587 * 124.78643 * 179.97438 * 8 7 6 10 10 O 1.21699 * 119.99931 * 180.02562 * 9 8 7 11 11 N 1.34781 * 120.00199 * 0.03974 * 9 8 7 12 12 C 1.46496 * 120.00209 * 179.97438 * 11 9 8 13 13 H 1.09001 * 112.85184 * 334.67219 * 12 11 9 14 14 C 1.53781 * 113.61116 * 105.86255 * 12 11 9 15 15 C 1.54054 * 86.98594 * 89.16400 * 14 12 11 16 16 H 1.08995 * 113.61466 * 270.88818 * 15 14 12 17 17 N 1.46496 * 113.69652 * 139.98610 * 15 14 12 18 18 C 1.36941 * 119.99965 * 107.47093 * 17 15 14 19 19 H 1.08001 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00222 * 180.02562 * 18 17 15 21 21 N 1.31612 * 119.99918 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99804 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46949 * 90.00182 * 22 20 18 24 24 H 1.48498 * 109.47008 * 210.00114 * 22 20 18 25 25 H 1.48500 * 109.47374 * 330.00435 * 22 20 18 26 26 C 1.53779 * 113.61616 * 203.47200 * 12 11 9 27 27 C 1.34116 * 110.42333 * 359.97438 * 8 7 6 28 28 C 1.38532 * 107.41240 * 359.77740 * 6 4 3 29 29 H 1.08999 * 109.47015 * 269.69510 * 1 2 3 30 30 H 1.09000 * 109.46646 * 29.68662 * 1 2 3 31 31 H 1.09000 * 109.47248 * 149.69380 * 1 2 3 32 32 H 1.09007 * 109.47066 * 270.30586 * 5 4 3 33 33 H 1.09007 * 109.46588 * 30.30035 * 5 4 3 34 34 H 1.08991 * 109.47873 * 150.30308 * 5 4 3 35 35 H 0.97000 * 119.99430 * 0.02562 * 11 9 8 36 36 H 1.09001 * 113.61634 * 203.66676 * 14 12 11 37 37 H 1.09000 * 113.61754 * 334.56859 * 14 12 11 38 38 H 0.97008 * 120.00497 * 287.47105 * 17 15 14 39 39 H 0.97009 * 120.00023 * 179.97438 * 21 20 18 40 40 H 1.08996 * 113.61810 * 25.43696 * 26 12 11 41 41 H 1.09007 * 113.61228 * 156.34085 * 26 12 11 42 42 H 1.08002 * 122.34297 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0543 0.0000 4 7 3.6071 0.6619 0.0027 5 6 4.7656 1.5587 0.0063 6 6 3.6501 -0.7047 -0.0043 7 16 4.7567 -2.0718 -0.0117 8 6 3.4208 -3.2112 -0.0179 9 6 3.5658 -4.6699 -0.0263 10 8 2.5772 -5.3796 -0.0306 11 7 4.7940 -5.2251 -0.0291 12 6 4.9389 -6.6828 -0.0369 13 1 4.0772 -7.1962 0.3898 14 6 5.3834 -7.2503 -1.3953 15 6 6.8327 -7.0555 -0.9107 16 1 7.2426 -6.0728 -1.1436 17 7 7.7310 -8.1502 -1.2859 18 6 8.6713 -7.9600 -2.2632 19 1 8.7502 -7.0030 -2.7576 20 6 9.5222 -8.9974 -2.6191 21 7 10.4261 -8.8143 -3.5580 22 14 9.3851 -10.6527 -1.7644 23 1 8.4287 -11.5144 -2.5048 24 1 10.7184 -11.3059 -1.7338 25 1 8.8991 -10.4540 -0.3753 26 6 6.2858 -7.1710 0.5220 27 6 2.2491 -2.5587 -0.0138 28 6 2.3419 -1.1606 -0.0062 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3632 0.8928 -0.5090 31 1 -0.3634 -0.8872 -0.5186 32 1 5.0519 1.7864 -1.0206 33 1 4.5085 2.4822 0.5251 34 1 5.5982 1.0748 0.5168 35 1 5.5819 -4.6593 -0.0251 36 1 5.1090 -8.2948 -1.5431 37 1 5.1157 -6.6176 -2.2416 38 1 7.6599 -9.0099 -0.8421 39 1 11.0210 -9.5392 -3.8065 40 1 6.7461 -6.4745 1.2226 41 1 6.2577 -8.1940 0.8974 42 1 1.3004 -3.0748 -0.0161 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020448652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:26 Heat of formation + Delta-G solvation = 79.414481 kcal Electronic energy + Delta-G solvation = -25008.694482 eV Core-core repulsion = 21310.322857 eV Total energy + Delta-G solvation = -3698.371625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47011 -41.24292 -39.45057 -36.77204 -35.86124 -34.79154 -34.21266 -32.46081 -30.65259 -30.12687 -27.14248 -26.56136 -26.26372 -24.76941 -23.77770 -23.09228 -21.29935 -20.90853 -20.59444 -19.39886 -19.04786 -17.82181 -17.16977 -16.96102 -16.71590 -16.58903 -16.26275 -15.92018 -15.67707 -15.46034 -14.85819 -14.52440 -14.43754 -14.34009 -14.08037 -14.04160 -13.79558 -13.52258 -13.33330 -13.25828 -13.06214 -12.88551 -12.57958 -12.48660 -12.14216 -12.06480 -12.03654 -11.85921 -11.82082 -11.28161 -11.20198 -10.88357 -10.87958 -10.16868 -9.60310 -9.26912 -8.92595 -8.01183 -5.34407 -0.41779 -0.26621 0.52283 0.62200 1.40090 1.43514 1.43628 1.50654 1.55196 1.97663 2.16276 2.50188 3.27046 3.28746 3.44059 3.61407 3.70621 3.71253 3.78709 3.84973 4.22944 4.23976 4.26636 4.29198 4.36669 4.56084 4.65485 4.77466 4.78673 4.82180 4.89600 4.91751 4.96745 5.00528 5.09264 5.16606 5.20244 5.39291 5.60222 5.60834 5.78625 6.23645 6.36893 6.38886 7.04019 7.09254 7.85961 8.04834 9.20160 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.021864 B = 0.002300 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.310986 B =12171.050735 C =13055.401438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.130 3.870 3 N -0.287 5.287 4 N -0.356 5.356 5 C 0.091 3.909 6 C 0.017 3.983 7 S 0.236 5.764 8 C -0.289 4.289 9 C 0.598 3.402 10 O -0.565 6.565 11 N -0.697 5.697 12 C 0.133 3.867 13 H 0.103 0.897 14 C -0.175 4.175 15 C 0.153 3.847 16 H 0.078 0.922 17 N -0.740 5.740 18 C -0.233 4.233 19 H 0.058 0.942 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.282 1.282 24 H -0.298 1.298 25 H -0.246 1.246 26 C -0.142 4.142 27 C 0.028 3.972 28 C -0.246 4.246 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.407 0.593 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.368 0.632 39 H 0.257 0.743 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.736 21.105 12.803 30.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.044 4.044 3 N -0.106 5.106 4 N -0.142 5.142 5 C -0.049 4.049 6 C -0.224 4.224 7 S 0.488 5.512 8 C -0.408 4.408 9 C 0.386 3.614 10 O -0.446 6.446 11 N -0.347 5.347 12 C 0.027 3.973 13 H 0.121 0.879 14 C -0.217 4.217 15 C 0.044 3.956 16 H 0.096 0.904 17 N -0.381 5.381 18 C -0.364 4.364 19 H 0.076 0.924 20 C -0.258 4.258 21 N -0.635 5.635 22 Si 0.782 3.218 23 H -0.208 1.208 24 H -0.225 1.225 25 H -0.171 1.171 26 C -0.181 4.181 27 C -0.005 4.005 28 C -0.262 4.262 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.243 0.757 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.202 0.798 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.551 21.981 12.649 30.283 hybrid contribution -0.577 -1.444 -0.238 1.573 sum -17.128 20.537 12.411 29.481 Atomic orbital electron populations 1.20475 0.83158 1.05067 1.04896 1.22958 0.98425 0.87194 0.95841 1.76713 0.86437 1.23258 1.24144 1.48267 1.05712 1.00837 1.59421 1.22346 0.83141 0.94224 1.05150 1.24943 1.00757 0.91147 1.05506 1.83809 1.01798 0.88087 1.77465 1.23288 0.98015 0.96341 1.23192 1.17026 0.83307 0.85755 0.75316 1.90804 1.38649 1.62914 1.52212 1.45485 1.07448 1.07500 1.74281 1.21617 0.98889 0.79556 0.97252 0.87880 1.24238 0.99237 1.01230 0.96947 1.22011 0.87974 0.91556 0.94097 0.90401 1.42729 1.39477 1.12021 1.43895 1.19100 1.08485 0.97961 1.10834 0.92417 1.25539 0.98157 1.02211 0.99890 1.69888 1.24533 1.33710 1.35359 0.85410 0.76640 0.79977 0.79755 1.20792 1.22495 1.17054 1.23732 0.93908 1.03161 0.97292 1.19578 0.99000 0.90690 0.91255 1.19102 0.91957 0.94354 1.20799 0.88307 0.89302 0.88644 0.89146 0.87322 0.87657 0.75721 0.89709 0.92865 0.79831 0.93427 0.89185 0.87934 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.46 71.24 0.74 -0.08 16 2 C 0.13 2.42 7.28 44.03 0.32 2.74 16 3 N -0.29 -5.87 12.44 -45.85 -0.57 -6.44 16 4 N -0.36 -6.50 4.05 -362.79 -1.47 -7.97 16 5 C 0.09 0.85 11.48 127.77 1.47 2.31 16 6 C 0.02 0.33 8.01 84.00 0.67 1.01 16 7 S 0.24 4.15 22.27 -56.49 -1.26 2.89 16 8 C -0.29 -6.49 6.33 23.51 0.15 -6.35 16 9 C 0.60 16.04 7.78 86.42 0.67 16.71 16 10 O -0.57 -18.73 16.35 -4.35 -0.07 -18.80 16 11 N -0.70 -16.88 5.26 -444.09 -2.33 -19.21 16 12 C 0.13 3.50 4.29 45.52 0.20 3.69 16 13 H 0.10 2.78 7.50 -2.39 -0.02 2.76 16 14 C -0.17 -5.59 7.70 31.21 0.24 -5.35 16 15 C 0.15 5.30 4.37 45.61 0.20 5.50 16 16 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 17 N -0.74 -32.86 5.21 -320.01 -1.67 -34.53 16 18 C -0.23 -12.92 10.45 84.03 0.88 -12.05 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 21 N -0.98 -62.61 13.97 21.65 0.30 -62.31 16 22 Si 0.95 44.63 27.74 68.60 1.90 46.53 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 25 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 26 C -0.14 -3.66 7.57 31.12 0.24 -3.42 16 27 C 0.03 0.61 9.84 21.79 0.21 0.82 16 28 C -0.25 -5.13 6.55 -21.57 -0.14 -5.27 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.41 8.33 7.75 -92.71 -0.72 7.61 16 36 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.37 15.56 5.79 -92.70 -0.54 15.02 16 39 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.10 2.52 8.12 -2.38 -0.02 2.50 16 42 H 0.16 3.13 7.97 -2.91 -0.02 3.11 16 Total: -1.00 -76.39 370.51 0.91 -75.49 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.24 Total: 27.49 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 6.31 Total: -3.14 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.74 Total: -130.47 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.07 Total: -18.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.90 Total: 46.53 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.26 Total: 2.89 kcal Total: -76.39 0.91 -75.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020448652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.901 kcal (2) G-P(sol) polarization free energy of solvation -76.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds