Wall clock time and date at job start Tue Mar 31 2020 18:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.58309 * 2 1 4 4 C 1.53189 * 109.58591 * 239.57714 * 2 1 3 5 5 C 1.53035 * 109.31128 * 185.57935 * 4 2 1 6 6 C 1.53039 * 109.54376 * 61.36118 * 5 4 2 7 7 H 1.09008 * 109.51984 * 58.60262 * 6 5 4 8 8 N 1.46492 * 109.50253 * 178.68299 * 6 5 4 9 9 C 1.34776 * 120.00537 * 204.84132 * 8 6 5 10 10 O 1.21764 * 119.99339 * 4.75404 * 9 8 6 11 11 C 1.46262 * 120.00545 * 184.75588 * 9 8 6 12 12 C 1.33475 * 122.20795 * 174.46243 * 11 9 8 13 13 S 1.75726 * 109.85341 * 179.71470 * 12 11 9 14 14 C 1.75941 * 91.05587 * 0.26710 * 13 12 11 15 15 C 1.36288 * 142.79918 * 179.97438 * 14 13 12 16 16 N 1.33743 * 107.81634 * 179.97438 * 15 14 13 17 17 C 1.30353 * 109.46197 * 0.02562 * 16 15 14 18 18 N 1.35919 * 109.81977 * 0.02562 * 14 13 12 19 19 C 1.53192 * 109.31378 * 298.63858 * 6 5 4 20 20 N 1.46922 * 109.58843 * 120.28482 * 2 1 3 21 21 C 1.36942 * 120.62819 * 353.37502 * 20 2 1 22 22 H 1.08001 * 120.00037 * 30.84434 * 21 20 2 23 23 C 1.38816 * 119.99931 * 210.84821 * 21 20 2 24 24 N 1.31618 * 119.99697 * 12.25207 * 23 21 20 25 25 Si 1.86803 * 120.00027 * 192.25124 * 23 21 20 26 26 H 1.48498 * 109.46871 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46703 * 119.99872 * 25 23 21 28 28 H 1.48495 * 109.46807 * 239.99990 * 25 23 21 29 29 H 1.09004 * 109.47327 * 299.71490 * 1 2 3 30 30 H 1.09006 * 109.47235 * 59.71379 * 1 2 3 31 31 H 1.09004 * 109.47410 * 179.71524 * 1 2 3 32 32 H 1.09004 * 109.49563 * 305.52880 * 4 2 1 33 33 H 1.09005 * 109.50025 * 65.62251 * 4 2 1 34 34 H 1.09005 * 109.46133 * 301.33737 * 5 4 2 35 35 H 1.09001 * 109.46000 * 181.38635 * 5 4 2 36 36 H 0.97006 * 119.99666 * 24.83766 * 8 6 5 37 37 H 1.07996 * 125.07585 * 359.97438 * 12 11 9 38 38 H 1.08000 * 126.09391 * 0.02562 * 15 14 13 39 39 H 1.08000 * 125.57391 * 180.02562 * 17 16 15 40 40 H 1.08993 * 109.59149 * 174.41579 * 19 6 5 41 41 H 1.08999 * 109.58153 * 294.84821 * 19 6 5 42 42 H 0.97003 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7308 -1.2445 5 6 3.5674 -0.8494 -1.1691 6 6 3.9569 -1.6656 0.0655 7 1 3.4987 -2.6530 0.0087 8 7 5.4142 -1.8051 0.1197 9 6 5.9678 -2.8454 0.7739 10 8 5.2580 -3.7152 1.2454 11 6 7.4209 -2.9295 0.9174 12 6 8.0099 -3.8793 1.6470 13 16 9.7549 -3.6803 1.5892 14 6 9.5922 -2.2689 0.5514 15 6 10.3115 -1.3167 -0.1068 16 7 9.4473 -0.5137 -0.7370 17 6 8.2300 -0.9174 -0.5038 18 7 8.2774 -2.0248 0.3082 19 6 3.4650 -0.9453 1.3249 20 7 2.0226 -0.6980 1.1953 21 6 1.1537 -1.1100 2.1703 22 1 0.1444 -1.3928 1.9099 23 6 1.5702 -1.1641 3.4934 24 7 2.7043 -0.5992 3.8499 25 14 0.5210 -2.0385 4.7679 26 1 -0.6957 -2.5861 4.1160 27 1 1.3001 -3.1485 5.3730 28 1 0.1252 -1.0764 5.8275 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5183 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.6029 -1.7268 -1.2892 33 1 1.7659 -0.1694 -2.1367 34 1 4.0061 0.1461 -1.0995 35 1 3.9377 -1.3472 -2.0652 36 1 5.9807 -1.1488 -0.3153 37 1 7.4917 -4.6569 2.1885 38 1 11.3877 -1.2270 -0.1183 39 1 7.3312 -0.4568 -0.8863 40 1 3.6517 -1.5690 2.1990 41 1 3.9903 0.0038 1.4316 42 1 2.9956 -0.6373 4.7744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071857533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:20 Heat of formation + Delta-G solvation = 89.497312 kcal Electronic energy + Delta-G solvation = -26944.479042 eV Core-core repulsion = 23246.544641 eV Total energy + Delta-G solvation = -3697.934401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.97472 -39.82371 -37.88968 -36.28784 -34.73432 -32.91410 -31.05275 -30.60825 -29.97737 -29.57882 -26.46773 -25.36211 -24.36055 -22.62433 -22.37427 -21.78789 -20.69131 -20.49093 -19.35187 -18.72310 -16.86495 -16.55574 -16.35978 -15.85299 -15.49324 -15.15805 -14.94634 -14.50627 -14.28772 -13.93836 -13.86390 -13.74127 -13.45039 -13.42828 -12.85944 -12.49655 -12.15094 -11.99448 -11.71941 -11.53080 -11.18429 -10.94700 -10.78850 -10.66423 -10.64161 -10.47500 -10.47267 -10.32202 -10.16594 -9.99673 -9.66673 -9.64314 -9.55835 -8.80604 -8.49570 -7.71508 -6.66053 -5.80044 -3.27368 0.41424 0.82445 1.25702 1.55426 2.20595 2.69040 3.07630 3.24844 3.37745 3.45169 3.46481 4.12913 4.28753 4.47642 4.62945 4.92095 5.09045 5.23232 5.25304 5.28714 5.41004 5.48729 5.56888 5.60887 5.87523 5.99899 6.06816 6.18896 6.20846 6.32311 6.34985 6.39814 6.53324 6.58947 6.65090 6.73979 6.98567 7.07217 7.19547 7.49247 7.55926 7.63598 7.80920 8.15147 8.44842 9.18446 9.81695 10.37365 11.28013 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003727 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.479682 B = 7511.723119 C = 8800.127772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.113 3.887 7 H 0.088 0.912 8 N -0.711 5.711 9 C 0.577 3.423 10 O -0.508 6.508 11 C 0.030 3.970 12 C -0.137 4.137 13 S 0.171 5.829 14 C -0.096 4.096 15 C 0.020 3.980 16 N -0.445 5.445 17 C 0.189 3.811 18 N -0.396 5.396 19 C 0.168 3.832 20 N -0.582 5.582 21 C -0.253 4.253 22 H 0.071 0.929 23 C 0.007 3.993 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.290 1.290 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.387 0.613 37 H 0.205 0.795 38 H 0.184 0.816 39 H 0.212 0.788 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.714 -3.423 -9.111 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.106 0.894 8 N -0.363 5.363 9 C 0.359 3.641 10 O -0.383 6.383 11 C -0.083 4.083 12 C -0.277 4.277 13 S 0.431 5.569 14 C -0.321 4.321 15 C -0.138 4.138 16 N -0.159 5.159 17 C -0.094 4.094 18 N -0.076 5.076 19 C 0.041 3.959 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.089 0.911 23 C -0.192 4.192 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.201 1.201 27 H -0.215 1.215 28 H -0.217 1.217 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.223 0.777 37 H 0.222 0.778 38 H 0.201 0.799 39 H 0.228 0.772 40 H 0.113 0.887 41 H 0.036 0.964 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.406 -4.086 -8.471 16.376 hybrid contribution -1.449 0.030 0.481 1.527 sum 11.957 -4.055 -7.991 14.942 Atomic orbital electron populations 1.21802 0.95875 1.01414 1.00300 1.20513 0.93192 0.93598 0.86933 0.95610 1.22043 0.93926 1.01460 0.99073 1.21704 0.97819 0.99641 0.96473 1.22217 0.76432 1.01524 0.98967 0.89371 1.46259 1.09547 1.26129 1.54333 1.16872 0.84345 0.83071 0.79849 1.90944 1.60809 1.38825 1.47741 1.19372 0.91990 0.93993 1.02916 1.25810 0.97820 1.02171 1.01896 1.84508 1.00543 1.22188 1.49676 1.24588 0.88100 1.07198 1.12211 1.21794 0.99518 0.92449 1.00057 1.70155 0.98717 1.25698 1.21360 1.25214 0.98437 0.87863 0.97841 1.44205 1.05505 1.22158 1.35765 1.21089 0.83897 0.96949 0.93947 1.44003 1.02458 1.64781 1.19335 1.19196 0.95415 1.37872 0.85734 0.91107 1.25146 0.97581 0.99253 0.97233 1.69980 1.22612 1.45257 1.16778 0.86233 0.79847 0.79155 0.81623 1.20144 1.21522 1.21688 0.91933 0.94283 0.92796 0.91948 0.92441 0.92123 0.92887 0.77706 0.77849 0.79941 0.77159 0.88692 0.96367 0.93716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.96 37.16 0.30 -2.19 16 2 C 0.16 3.24 3.50 -67.60 -0.24 3.01 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.03 5.37 -26.62 -0.14 -2.17 16 5 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 6 C 0.11 2.10 2.64 -67.81 -0.18 1.92 16 7 H 0.09 1.84 7.52 -51.92 -0.39 1.45 16 8 N -0.71 -11.31 5.07 -55.12 -0.28 -11.58 16 9 C 0.58 9.83 7.71 -13.04 -0.10 9.73 16 10 O -0.51 -10.46 16.23 5.13 0.08 -10.37 16 11 C 0.03 0.43 6.70 -83.21 -0.56 -0.13 16 12 C -0.14 -1.63 10.63 29.07 0.31 -1.32 16 13 S 0.17 1.66 23.33 -107.50 -2.51 -0.85 16 14 C -0.10 -1.14 7.81 -16.44 -0.13 -1.27 16 15 C 0.02 0.23 11.93 -17.42 -0.21 0.02 16 16 N -0.44 -5.75 11.21 -13.83 -0.16 -5.90 16 17 C 0.19 2.32 11.91 -88.30 -1.05 1.27 16 18 N -0.40 -5.17 3.20 -60.40 -0.19 -5.37 16 19 C 0.17 3.93 4.84 -3.71 -0.02 3.92 16 20 N -0.58 -14.06 2.99 -164.78 -0.49 -14.55 16 21 C -0.25 -6.74 8.55 -15.06 -0.13 -6.87 16 22 H 0.07 1.85 6.26 -52.49 -0.33 1.52 16 23 C 0.01 0.19 5.01 -17.43 -0.09 0.10 16 24 N -0.90 -26.19 11.10 55.49 0.62 -25.57 16 25 Si 0.90 21.89 29.57 -169.99 -5.03 16.87 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H 0.06 1.24 7.64 -51.93 -0.40 0.84 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.39 5.04 4.92 -40.82 -0.20 4.84 16 37 H 0.20 2.15 7.94 -52.49 -0.42 1.74 16 38 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.21 2.03 6.01 -52.49 -0.32 1.71 16 40 H 0.09 2.62 6.11 -51.93 -0.32 2.30 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -32.25 351.13 -10.31 -42.56 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.27 Total: 5.42 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.38 Total: 4.06 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.50 Total: -62.98 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.37 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.51 Total: -0.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.25 -10.31 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.057 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds