Wall clock time and date at job start Tue Mar 31 2020 18:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.58309 * 2 1 4 4 C 1.53189 * 109.58591 * 239.57714 * 2 1 3 5 5 C 1.53035 * 109.31128 * 185.57935 * 4 2 1 6 6 C 1.53039 * 109.54376 * 61.36118 * 5 4 2 7 7 H 1.09008 * 109.51984 * 58.60262 * 6 5 4 8 8 N 1.46492 * 109.50253 * 178.68299 * 6 5 4 9 9 C 1.34776 * 120.00537 * 204.84132 * 8 6 5 10 10 O 1.21764 * 119.99339 * 4.75404 * 9 8 6 11 11 C 1.46262 * 120.00545 * 184.75588 * 9 8 6 12 12 C 1.33475 * 122.20795 * 174.46243 * 11 9 8 13 13 S 1.75726 * 109.85341 * 179.71470 * 12 11 9 14 14 C 1.75941 * 91.05587 * 0.26710 * 13 12 11 15 15 C 1.36288 * 142.79918 * 179.97438 * 14 13 12 16 16 N 1.33743 * 107.81634 * 179.97438 * 15 14 13 17 17 C 1.30353 * 109.46197 * 0.02562 * 16 15 14 18 18 N 1.35919 * 109.81977 * 0.02562 * 14 13 12 19 19 C 1.53192 * 109.31378 * 298.63858 * 6 5 4 20 20 N 1.46922 * 109.58843 * 120.28482 * 2 1 3 21 21 C 1.36942 * 120.62819 * 353.37502 * 20 2 1 22 22 H 1.08001 * 120.00037 * 30.84434 * 21 20 2 23 23 C 1.38816 * 119.99931 * 210.84821 * 21 20 2 24 24 N 1.31618 * 119.99697 * 12.25207 * 23 21 20 25 25 Si 1.86803 * 120.00027 * 192.25124 * 23 21 20 26 26 H 1.48498 * 109.46871 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46703 * 119.99872 * 25 23 21 28 28 H 1.48495 * 109.46807 * 239.99990 * 25 23 21 29 29 H 1.09004 * 109.47327 * 299.71490 * 1 2 3 30 30 H 1.09006 * 109.47235 * 59.71379 * 1 2 3 31 31 H 1.09004 * 109.47410 * 179.71524 * 1 2 3 32 32 H 1.09004 * 109.49563 * 305.52880 * 4 2 1 33 33 H 1.09005 * 109.50025 * 65.62251 * 4 2 1 34 34 H 1.09005 * 109.46133 * 301.33737 * 5 4 2 35 35 H 1.09001 * 109.46000 * 181.38635 * 5 4 2 36 36 H 0.97006 * 119.99666 * 24.83766 * 8 6 5 37 37 H 1.07996 * 125.07585 * 359.97438 * 12 11 9 38 38 H 1.08000 * 126.09391 * 0.02562 * 15 14 13 39 39 H 1.08000 * 125.57391 * 180.02562 * 17 16 15 40 40 H 1.08993 * 109.59149 * 174.41579 * 19 6 5 41 41 H 1.08999 * 109.58153 * 294.84821 * 19 6 5 42 42 H 0.97003 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7308 -1.2445 5 6 3.5674 -0.8494 -1.1691 6 6 3.9569 -1.6656 0.0655 7 1 3.4987 -2.6530 0.0087 8 7 5.4142 -1.8051 0.1197 9 6 5.9678 -2.8454 0.7739 10 8 5.2580 -3.7152 1.2454 11 6 7.4209 -2.9295 0.9174 12 6 8.0099 -3.8793 1.6470 13 16 9.7549 -3.6803 1.5892 14 6 9.5922 -2.2689 0.5514 15 6 10.3115 -1.3167 -0.1068 16 7 9.4473 -0.5137 -0.7370 17 6 8.2300 -0.9174 -0.5038 18 7 8.2774 -2.0248 0.3082 19 6 3.4650 -0.9453 1.3249 20 7 2.0226 -0.6980 1.1953 21 6 1.1537 -1.1100 2.1703 22 1 0.1444 -1.3928 1.9099 23 6 1.5702 -1.1641 3.4934 24 7 2.7043 -0.5992 3.8499 25 14 0.5210 -2.0385 4.7679 26 1 -0.6957 -2.5861 4.1160 27 1 1.3001 -3.1485 5.3730 28 1 0.1252 -1.0764 5.8275 29 1 -0.3634 0.5094 0.8925 30 1 -0.3634 0.5183 -0.8874 31 1 -0.3634 -1.0277 -0.0051 32 1 1.6029 -1.7268 -1.2892 33 1 1.7659 -0.1694 -2.1367 34 1 4.0061 0.1461 -1.0995 35 1 3.9377 -1.3472 -2.0652 36 1 5.9807 -1.1488 -0.3153 37 1 7.4917 -4.6569 2.1885 38 1 11.3877 -1.2270 -0.1183 39 1 7.3312 -0.4568 -0.8863 40 1 3.6517 -1.5690 2.1990 41 1 3.9903 0.0038 1.4316 42 1 2.9956 -0.6373 4.7744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071857533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:20 Heat of formation + Delta-G solvation = 69.596105 kcal Electronic energy + Delta-G solvation = -26945.342023 eV Core-core repulsion = 23246.544641 eV Total energy + Delta-G solvation = -3698.797382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.90332 -41.18060 -39.42008 -37.34928 -36.25787 -34.71718 -32.49143 -31.78554 -31.58280 -30.56624 -27.96630 -27.11524 -25.62995 -24.04154 -23.62011 -22.80764 -22.11019 -21.76205 -20.84805 -19.84383 -18.37893 -17.94516 -17.44336 -17.32400 -16.95296 -16.40117 -16.06152 -15.95775 -15.67715 -15.44429 -15.23457 -15.01457 -14.72138 -14.61344 -14.40159 -14.16744 -13.55796 -13.18512 -13.06867 -12.79131 -12.74466 -12.62359 -12.58305 -12.32377 -12.15188 -12.00944 -11.73937 -11.56816 -11.56091 -11.35071 -11.28294 -11.16352 -10.62599 -10.57795 -10.29419 -8.63567 -8.55665 -7.87299 -5.36248 -0.59920 -0.04225 0.32997 0.56862 1.25225 1.40645 1.43813 1.52541 1.69851 1.86939 2.01928 2.48762 3.10574 3.30058 3.39483 3.61196 3.72723 3.87147 3.98389 4.04950 4.19736 4.22423 4.34836 4.38992 4.54946 4.66423 4.68435 4.75342 4.84868 4.99489 5.04286 5.11325 5.20766 5.21472 5.27101 5.32618 5.53781 5.58592 5.68874 5.71226 5.75161 6.22956 6.41744 6.61089 6.86153 7.14639 7.86755 8.36663 9.17962 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.003727 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.479682 B = 7511.723119 C = 8800.127772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.111 4.111 6 C 0.129 3.871 7 H 0.063 0.937 8 N -0.702 5.702 9 C 0.575 3.425 10 O -0.555 6.555 11 C 0.000 4.000 12 C -0.130 4.130 13 S 0.248 5.752 14 C -0.121 4.121 15 C 0.020 3.980 16 N -0.462 5.462 17 C 0.176 3.824 18 N -0.399 5.399 19 C 0.180 3.820 20 N -0.602 5.602 21 C -0.249 4.249 22 H 0.075 0.925 23 C -0.052 4.052 24 N -0.936 5.936 25 Si 0.957 3.043 26 H -0.262 1.262 27 H -0.298 1.298 28 H -0.290 1.290 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.403 0.597 37 H 0.213 0.787 38 H 0.212 0.788 39 H 0.229 0.771 40 H 0.045 0.955 41 H -0.003 1.003 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.703 -3.555 -11.150 18.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.156 4.156 5 C -0.149 4.149 6 C 0.023 3.977 7 H 0.081 0.919 8 N -0.355 5.355 9 C 0.359 3.641 10 O -0.433 6.433 11 C -0.113 4.113 12 C -0.271 4.271 13 S 0.509 5.491 14 C -0.345 4.345 15 C -0.139 4.139 16 N -0.177 5.177 17 C -0.105 4.105 18 N -0.080 5.080 19 C 0.053 3.947 20 N -0.326 5.326 21 C -0.380 4.380 22 H 0.093 0.907 23 C -0.247 4.247 24 N -0.583 5.583 25 Si 0.786 3.214 26 H -0.186 1.186 27 H -0.226 1.226 28 H -0.217 1.217 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.241 0.759 37 H 0.230 0.770 38 H 0.229 0.771 39 H 0.245 0.755 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.418 -4.192 -10.565 18.359 hybrid contribution -1.657 0.068 1.107 1.994 sum 12.760 -4.124 -9.458 16.410 Atomic orbital electron populations 1.21736 0.94700 1.01200 1.01069 1.20825 0.94353 0.93401 0.86674 0.96030 1.21945 0.94166 1.01081 0.98409 1.21698 0.97529 1.00003 0.95689 1.21730 0.77707 0.99974 0.98272 0.91924 1.46077 1.08720 1.26432 1.54259 1.17277 0.85650 0.82427 0.78708 1.90909 1.62336 1.40479 1.49601 1.18938 0.90513 0.96062 1.05813 1.26200 1.00114 1.00989 0.99789 1.84278 0.97198 1.20024 1.47605 1.25064 0.87745 1.08530 1.13206 1.22342 1.00720 0.91685 0.99110 1.70168 0.99175 1.26334 1.22060 1.25622 0.99100 0.87886 0.97930 1.44198 1.05720 1.22189 1.35894 1.20752 0.84022 0.95284 0.94634 1.44297 1.02375 1.65679 1.20277 1.19526 0.95831 1.36241 0.86376 0.90698 1.25849 0.98864 1.00786 0.99191 1.70147 1.24352 1.47375 1.16383 0.85338 0.78800 0.77744 0.79486 1.18621 1.22556 1.21695 0.94340 0.90295 0.93465 0.92628 0.88436 0.90750 0.89437 0.75855 0.77044 0.77106 0.75524 0.93619 0.98508 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 7.96 71.98 0.57 -3.96 16 2 C 0.15 5.88 3.50 44.97 0.16 6.03 16 3 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 4 C -0.12 -3.46 5.37 30.67 0.16 -3.29 16 5 C -0.11 -3.14 5.35 30.62 0.16 -2.97 16 6 C 0.13 4.82 2.64 45.07 0.12 4.94 16 7 H 0.06 2.69 7.52 -2.38 -0.02 2.68 16 8 N -0.70 -22.56 5.07 -446.50 -2.27 -24.82 16 9 C 0.58 20.20 7.71 86.33 0.67 20.87 16 10 O -0.55 -23.99 16.23 -4.55 -0.07 -24.06 16 11 C 0.00 0.01 6.70 39.07 0.26 0.27 16 12 C -0.13 -2.99 10.63 66.74 0.71 -2.28 16 13 S 0.25 4.21 23.33 -56.49 -1.32 2.89 16 14 C -0.12 -2.67 7.81 83.61 0.65 -2.01 16 15 C 0.02 0.41 11.93 83.95 1.00 1.41 16 16 N -0.46 -11.26 11.21 -197.67 -2.22 -13.48 16 17 C 0.18 4.14 11.91 179.54 2.14 6.28 16 18 N -0.40 -10.07 3.20 -345.00 -1.10 -11.18 16 19 C 0.18 8.79 4.84 86.36 0.42 9.21 16 20 N -0.60 -29.73 2.99 -675.24 -2.02 -31.75 16 21 C -0.25 -13.66 8.55 84.03 0.72 -12.94 16 22 H 0.08 3.96 6.26 -2.91 -0.02 3.94 16 23 C -0.05 -2.98 5.01 84.86 0.43 -2.55 16 24 N -0.94 -57.11 11.10 21.65 0.24 -56.87 16 25 Si 0.96 46.49 29.57 68.60 2.03 48.52 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 28 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 29 H 0.04 1.50 7.64 -2.38 -0.02 1.48 16 30 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.40 10.24 4.92 -92.70 -0.46 9.79 16 37 H 0.21 4.39 7.94 -2.91 -0.02 4.37 16 38 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 39 H 0.23 4.10 6.01 -2.91 -0.02 4.08 16 40 H 0.05 2.68 6.11 -2.39 -0.01 2.67 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -74.49 351.13 2.05 -72.44 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.61 Total: 19.30 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 8.17 Total: 19.01 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -7.36 Total: -138.09 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.32 Total: 2.89 kcal Total: -74.49 2.05 -72.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071857533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.032 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds