Wall clock time and date at job start Tue Mar 31 2020 18:46:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09007 * 109.70526 * 2 1
4 4 C 1.53186 * 109.58885 * 239.64142 * 2 1 3
5 5 C 1.53038 * 109.31837 * 185.57795 * 4 2 1
6 6 C 1.53042 * 109.53465 * 61.36596 * 5 4 2
7 7 H 1.09002 * 109.49747 * 178.69081 * 6 5 4
8 8 N 1.46498 * 109.52870 * 58.60638 * 6 5 4
9 9 C 1.34773 * 120.00215 * 155.14732 * 8 6 5
10 10 O 1.21758 * 119.99949 * 5.00460 * 9 8 6
11 11 C 1.46264 * 119.99573 * 185.01041 * 9 8 6
12 12 C 1.33484 * 122.20607 * 186.07702 * 11 9 8
13 13 S 1.75712 * 109.85628 * 179.97438 * 12 11 9
14 14 C 1.75938 * 91.05811 * 0.02562 * 13 12 11
15 15 C 1.36291 * 142.80386 * 179.97438 * 14 13 12
16 16 N 1.33738 * 107.81996 * 179.97438 * 15 14 13
17 17 C 1.30364 * 109.46275 * 0.02562 * 16 15 14
18 18 N 1.35920 * 109.81699 * 359.75646 * 14 13 12
19 19 C 1.53195 * 109.31387 * 298.63375 * 6 5 4
20 20 N 1.46930 * 108.77372 * 54.63729 * 19 6 5
21 21 C 1.36932 * 120.63089 * 126.11425 * 20 19 6
22 22 H 1.07995 * 120.00364 * 216.26362 * 21 20 19
23 23 C 1.38814 * 119.99638 * 36.27180 * 21 20 19
24 24 N 1.31616 * 120.00306 * 0.57247 * 23 21 20
25 25 Si 1.86802 * 119.99611 * 180.57491 * 23 21 20
26 26 H 1.48497 * 109.47342 * 359.97438 * 25 23 21
27 27 H 1.48506 * 109.47193 * 119.99902 * 25 23 21
28 28 H 1.48509 * 109.47099 * 239.99490 * 25 23 21
29 29 H 1.09006 * 109.47082 * 299.64600 * 1 2 3
30 30 H 1.08995 * 109.47271 * 59.64498 * 1 2 3
31 31 H 1.09001 * 109.47406 * 179.64815 * 1 2 3
32 32 H 1.09004 * 109.49953 * 65.62574 * 4 2 1
33 33 H 1.09006 * 109.52480 * 305.54528 * 4 2 1
34 34 H 1.08998 * 109.45670 * 301.34648 * 5 4 2
35 35 H 1.08996 * 109.45398 * 181.37575 * 5 4 2
36 36 H 0.97008 * 119.99297 * 335.13998 * 8 6 5
37 37 H 1.08000 * 125.06559 * 359.94075 * 12 11 9
38 38 H 1.08000 * 126.08992 * 0.02625 * 15 14 13
39 39 H 1.07995 * 125.57514 * 179.97438 * 17 16 15
40 40 H 1.09001 * 109.58730 * 294.85272 * 19 6 5
41 41 H 1.08991 * 109.70562 * 174.49453 * 19 6 5
42 42 H 0.97000 * 119.99910 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0262 0.0000
4 6 2.0436 -0.7294 -1.2453
5 6 3.5675 -0.8480 -1.1701
6 6 3.9568 -1.6658 0.0636
7 1 5.0412 -1.7696 0.1038
8 7 3.3411 -2.9928 -0.0142
9 6 3.8964 -4.0327 0.6389
10 8 4.8560 -3.8524 1.3664
11 6 3.3464 -5.3779 0.4737
12 6 3.7834 -6.4178 1.1874
13 16 2.9030 -7.8679 0.7299
14 6 1.9566 -6.9621 -0.4445
15 6 0.9681 -7.0912 -1.3739
16 7 0.7547 -5.8867 -1.9145
17 6 1.5591 -5.0174 -1.3697
18 7 2.3331 -5.6562 -0.4310
19 6 3.4651 -0.9469 1.3238
20 7 2.0225 -0.6995 1.1946
21 6 1.1531 -1.1179 2.1662
22 1 0.1737 -1.4827 1.8938
23 6 1.5305 -1.0731 3.5013
24 7 2.7197 -0.6179 3.8341
25 14 0.3504 -1.6590 4.8255
26 1 -0.9127 -2.1194 4.1946
27 1 0.9670 -2.7819 5.5766
28 1 0.0584 -0.5409 5.7583
29 1 -0.3633 0.5084 0.8932
30 1 -0.3633 0.5193 -0.8867
31 1 -0.3634 -1.0276 -0.0063
32 1 1.7660 -0.1669 -2.1368
33 1 1.6030 -1.7254 -1.2918
34 1 4.0061 0.1473 -1.0993
35 1 3.9376 -1.3451 -2.0668
36 1 2.5336 -3.1229 -0.5358
37 1 4.5624 -6.3743 1.9342
38 1 0.4489 -8.0035 -1.6280
39 1 1.6069 -3.9665 -1.6137
40 1 3.9903 0.0021 1.4317
41 1 3.6520 -1.5695 2.1986
42 1 2.9835 -0.5870 4.7671
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071857536.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:46:24
Heat of formation + Delta-G solvation = 71.687037 kcal
Electronic energy + Delta-G solvation = -27871.364728 eV
Core-core repulsion = 24172.658016 eV
Total energy + Delta-G solvation = -3698.706712 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 334.120 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-43.87879 -41.17658 -39.38808 -37.28458 -35.97059 -34.57367 -32.46174 -31.78800
-31.55090 -30.52622 -27.99366 -26.99480 -25.84943 -23.91787 -23.60211 -22.83149
-22.18366 -21.63515 -20.57005 -19.89804 -18.24087 -17.96140 -17.37293 -17.16598
-16.86143 -16.38990 -16.06087 -15.94188 -15.66104 -15.37971 -15.21753 -14.87556
-14.60603 -14.51338 -14.48829 -14.07653 -13.66411 -13.10945 -13.05035 -12.84812
-12.68263 -12.60992 -12.55523 -12.49188 -12.19182 -12.07810 -11.62059 -11.55741
-11.43462 -11.32992 -11.19604 -11.13305 -10.59306 -10.55158 -10.13791 -8.54597
-8.47624 -7.84223 -5.38933 -0.56098 -0.01890 0.35129 0.60624 1.28738
1.36889 1.39725 1.47564 1.75556 1.94732 2.15625 2.45816 3.18321
3.31587 3.40185 3.63035 3.71166 3.92857 4.02447 4.05591 4.14281
4.24024 4.40259 4.46322 4.60616 4.69489 4.71348 4.78188 4.93621
4.98542 5.04657 5.08769 5.21474 5.25592 5.28609 5.50514 5.56431
5.60643 5.70281 5.73848 5.80600 6.34678 6.47579 6.62399 6.96886
7.19589 7.89916 8.42663 9.19181
Molecular weight = 334.12amu
Principal moments of inertia in cm(-1)
A = 0.010843 B = 0.005149 C = 0.004569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2581.787325 B = 5436.562237 C = 6127.171942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.154 3.846
3 H 0.020 0.980
4 C -0.122 4.122
5 C -0.113 4.113
6 C 0.123 3.877
7 H 0.074 0.926
8 N -0.685 5.685
9 C 0.572 3.428
10 O -0.558 6.558
11 C 0.002 3.998
12 C -0.134 4.134
13 S 0.245 5.755
14 C -0.121 4.121
15 C 0.019 3.981
16 N -0.460 5.460
17 C 0.177 3.823
18 N -0.398 5.398
19 C 0.169 3.831
20 N -0.596 5.596
21 C -0.238 4.238
22 H 0.066 0.934
23 C -0.046 4.046
24 N -0.932 5.932
25 Si 0.948 3.052
26 H -0.266 1.266
27 H -0.299 1.299
28 H -0.291 1.291
29 H 0.035 0.965
30 H 0.076 0.924
31 H 0.045 0.955
32 H 0.094 0.906
33 H 0.053 0.947
34 H 0.081 0.919
35 H 0.086 0.914
36 H 0.399 0.601
37 H 0.213 0.787
38 H 0.213 0.787
39 H 0.220 0.780
40 H 0.002 0.998
41 H 0.056 0.944
42 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.077 -11.741 -12.849 17.406
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.049 3.951
3 H 0.037 0.963
4 C -0.161 4.161
5 C -0.151 4.151
6 C 0.018 3.982
7 H 0.092 0.908
8 N -0.337 5.337
9 C 0.356 3.644
10 O -0.438 6.438
11 C -0.112 4.112
12 C -0.275 4.275
13 S 0.505 5.495
14 C -0.346 4.346
15 C -0.139 4.139
16 N -0.175 5.175
17 C -0.105 4.105
18 N -0.078 5.078
19 C 0.042 3.958
20 N -0.320 5.320
21 C -0.369 4.369
22 H 0.083 0.917
23 C -0.242 4.242
24 N -0.578 5.578
25 Si 0.777 3.223
26 H -0.190 1.190
27 H -0.226 1.226
28 H -0.218 1.218
29 H 0.054 0.946
30 H 0.094 0.906
31 H 0.065 0.935
32 H 0.113 0.887
33 H 0.072 0.928
34 H 0.099 0.901
35 H 0.105 0.895
36 H 0.238 0.762
37 H 0.230 0.770
38 H 0.230 0.770
39 H 0.236 0.764
40 H 0.020 0.980
41 H 0.074 0.926
42 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 0.317 -12.662 -12.356 17.694
hybrid contribution -0.109 1.410 1.531 2.084
sum 0.207 -11.251 -10.825 15.615
Atomic orbital electron populations
1.21713 0.94897 1.01062 1.00869 1.20783 0.94005 0.93465 0.86879
0.96255 1.22004 0.94846 1.00626 0.98629 1.21711 0.97159 1.00342
0.95850 1.21723 0.96635 0.81491 0.98394 0.90758 1.45937 1.29176
1.08512 1.50093 1.17218 0.83376 0.83461 0.80331 1.90860 1.29284
1.85048 1.38627 1.19063 0.96405 0.96749 0.98945 1.26166 1.04102
0.95046 1.02138 1.84181 1.29902 1.03142 1.32266 1.25081 1.09683
0.88718 1.11077 1.22347 0.97985 0.97521 0.96089 1.70162 1.21448
1.00702 1.25230 1.25482 0.92817 1.00478 0.91682 1.44171 1.26268
1.09331 1.28024 1.20933 0.84221 0.95601 0.95012 1.44175 1.02130
1.65331 1.20365 1.19272 0.97552 1.34354 0.85743 0.91657 1.25933
0.98009 1.00532 0.99677 1.70086 1.20263 1.51456 1.15988 0.85488
0.79602 0.76979 0.80215 1.19011 1.22649 1.21806 0.94566 0.90566
0.93543 0.88718 0.92823 0.90053 0.89504 0.76154 0.77024 0.77016
0.76389 0.98032 0.92562 0.94594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.32 8.01 71.98 0.58 -3.75 16
2 C 0.15 5.66 3.50 44.97 0.16 5.82 16
3 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16
4 C -0.12 -3.33 5.20 30.67 0.16 -3.17 16
5 C -0.11 -3.08 5.59 30.62 0.17 -2.91 16
6 C 0.12 4.48 2.77 45.07 0.12 4.60 16
7 H 0.07 2.77 7.66 -2.39 -0.02 2.75 16
8 N -0.69 -23.75 4.89 -446.49 -2.18 -25.93 16
9 C 0.57 21.33 7.70 86.33 0.66 22.00 16
10 O -0.56 -24.47 16.28 -4.53 -0.07 -24.54 16
11 C 0.00 0.06 6.70 39.07 0.26 0.32 16
12 C -0.13 -3.38 10.63 66.74 0.71 -2.67 16
13 S 0.24 4.68 23.33 -56.49 -1.32 3.36 16
14 C -0.12 -2.98 7.81 83.61 0.65 -2.33 16
15 C 0.02 0.44 11.93 83.95 1.00 1.44 16
16 N -0.46 -12.46 11.21 -197.66 -2.22 -14.68 16
17 C 0.18 4.80 11.90 179.53 2.14 6.93 16
18 N -0.40 -11.27 3.20 -344.99 -1.10 -12.37 16
19 C 0.17 8.07 4.84 86.36 0.42 8.49 16
20 N -0.60 -27.83 2.90 -675.22 -1.96 -29.79 16
21 C -0.24 -12.55 8.40 84.03 0.71 -11.84 16
22 H 0.07 3.38 6.42 -2.91 -0.02 3.37 16
23 C -0.05 -2.58 5.23 84.86 0.44 -2.14 16
24 N -0.93 -56.02 10.88 21.65 0.24 -55.78 16
25 Si 0.95 45.85 29.55 68.60 2.03 47.87 16
26 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16
27 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16
28 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16
29 H 0.04 1.39 7.68 -2.38 -0.02 1.37 16
30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
31 H 0.05 1.59 7.41 -2.39 -0.02 1.58 16
32 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
33 H 0.05 1.43 6.03 -2.38 -0.01 1.41 16
34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.40 12.31 3.28 -92.70 -0.30 12.00 16
37 H 0.21 4.80 7.94 -2.91 -0.02 4.77 16
38 H 0.21 3.30 8.06 -2.91 -0.02 3.27 16
39 H 0.22 5.09 5.73 -2.91 -0.02 5.07 16
40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16
41 H 0.06 3.24 6.10 -2.39 -0.01 3.23 16
42 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16
Total: -1.00 -70.99 347.21 2.36 -68.63
By element:
Atomic # 1 Polarization: 21.66 SS G_CDS: 0.76 Total: 22.42 kcal
Atomic # 6 Polarization: 12.62 SS G_CDS: 8.18 Total: 20.80 kcal
Atomic # 7 Polarization: -131.33 SS G_CDS: -7.23 Total: -138.55 kcal
Atomic # 8 Polarization: -24.47 SS G_CDS: -0.07 Total: -24.54 kcal
Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal
Atomic # 16 Polarization: 4.68 SS G_CDS: -1.32 Total: 3.36 kcal
Total: -70.99 2.36 -68.63 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071857536.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.321 kcal
(2) G-P(sol) polarization free energy of solvation -70.992 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.329 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.634 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds