Wall clock time and date at job start Tue Mar 31 2020 18:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.78114 * 2 1 4 4 C 1.54324 * 110.71698 * 236.76132 * 2 1 3 5 5 N 1.47022 * 107.27053 * 219.44319 * 4 2 1 6 6 C 1.36936 * 125.64847 * 178.98921 * 5 4 2 7 7 H 1.08006 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00316 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99513 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47381 * 59.99853 * 10 8 6 12 12 H 1.48508 * 109.46966 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47365 * 299.99220 * 10 8 6 14 14 C 1.47423 * 108.70712 * 358.94287 * 5 4 2 15 15 C 1.54917 * 104.82905 * 24.12765 * 14 5 4 16 16 H 1.08998 * 111.03321 * 81.07954 * 15 14 5 17 17 N 1.46502 * 111.00240 * 204.91676 * 15 14 5 18 18 C 1.34773 * 120.00052 * 267.19621 * 17 15 14 19 19 O 1.21280 * 119.99823 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00053 * 180.02562 * 18 17 15 21 21 C 1.50698 * 109.47062 * 180.02562 * 20 18 17 22 22 C 1.30905 * 121.84104 * 84.94046 * 21 20 18 23 23 S 1.75783 * 109.82095 * 180.02562 * 22 21 20 24 24 C 1.76247 * 90.69926 * 0.02562 * 23 22 21 25 25 N 1.32354 * 141.95408 * 179.97438 * 24 23 22 26 26 C 1.33877 * 109.13518 * 180.02562 * 25 24 23 27 27 C 1.34334 * 108.39037 * 359.97438 * 26 25 24 28 28 N 1.35153 * 109.22353 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.46747 * 296.75793 * 1 2 3 30 30 H 1.09002 * 109.47143 * 56.75962 * 1 2 3 31 31 H 1.08998 * 109.46942 * 176.76404 * 1 2 3 32 32 H 1.08999 * 109.88685 * 338.85904 * 4 2 1 33 33 H 1.09001 * 109.88069 * 100.03262 * 4 2 1 34 34 H 0.97003 * 119.99598 * 180.02562 * 9 8 6 35 35 H 1.08996 * 110.36607 * 265.29454 * 14 5 4 36 36 H 1.09000 * 110.37260 * 142.96254 * 14 5 4 37 37 H 0.96998 * 119.99802 * 87.19839 * 17 15 14 38 38 H 1.08996 * 109.47277 * 59.99632 * 20 18 17 39 39 H 1.09000 * 109.46576 * 299.99699 * 20 18 17 40 40 H 1.08006 * 125.09158 * 0.07183 * 22 21 20 41 41 H 1.08005 * 125.80399 * 180.26577 * 26 25 24 42 42 H 1.08003 * 126.43584 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0043 -2.3968 -1.5019 7 1 3.7617 -2.5499 -2.5432 8 6 5.0865 -3.0577 -0.9371 9 7 5.3825 -2.8706 0.3317 10 14 6.1234 -4.2112 -1.9779 11 1 6.7157 -3.4572 -3.1120 12 1 7.2103 -4.7869 -1.1456 13 1 5.2693 -5.3062 -2.5038 14 6 3.4633 -1.2499 0.6874 15 6 2.0790 -0.7956 1.2138 16 1 1.4448 -1.6533 1.4378 17 7 2.2215 0.0695 2.3875 18 6 2.1874 -0.4630 3.6252 19 8 2.0382 -1.6582 3.7672 20 6 2.3335 0.4269 4.8326 21 6 2.2618 -0.4091 6.0844 22 6 3.3157 -1.0123 6.5733 23 16 2.8759 -1.8942 8.0289 24 6 1.2033 -1.3612 7.8726 25 7 0.0194 -1.4585 8.4563 26 6 -0.8752 -0.7516 7.7547 27 6 -0.2470 -0.1947 6.7060 28 7 1.0854 -0.5820 6.7746 29 1 -0.3633 0.4627 0.9177 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 1.3129 -1.4759 -1.5776 33 1 2.3741 -0.1024 -1.9977 34 1 6.1389 -3.3322 0.7264 35 1 4.1931 -0.4480 0.7983 36 1 3.7960 -2.1427 1.2168 37 1 2.3405 1.0254 2.2739 38 1 1.5301 1.1634 4.8405 39 1 3.2951 0.9386 4.7925 40 1 4.3072 -0.9733 6.1467 41 1 -1.9228 -0.6434 7.9940 42 1 -0.6939 0.4353 5.9511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080951449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:01 Heat of formation + Delta-G solvation = 93.274514 kcal Electronic energy + Delta-G solvation = -26246.208362 eV Core-core repulsion = 22548.437753 eV Total energy + Delta-G solvation = -3697.770609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.75257 -39.77267 -37.85628 -36.70930 -34.02248 -32.77911 -31.44923 -30.49246 -30.41305 -28.66590 -27.37994 -25.68402 -23.95294 -23.30480 -21.95950 -21.08285 -20.22387 -20.13408 -19.52960 -18.30745 -17.17112 -16.98264 -16.09042 -15.88690 -15.51600 -15.24457 -15.12922 -14.79418 -14.43719 -14.03104 -13.77106 -13.56712 -13.14453 -12.98288 -12.87567 -12.69664 -12.49478 -12.21142 -11.81333 -11.78121 -11.36508 -11.29622 -11.13545 -10.81770 -10.72253 -10.56225 -10.45047 -10.32019 -10.05146 -9.86250 -9.83774 -9.67137 -8.99065 -8.69388 -8.57830 -7.76344 -6.89049 -5.68087 -3.11509 0.77895 0.84382 1.49519 2.03905 2.42663 2.75622 2.79569 3.35912 3.39411 3.43436 3.44746 4.11424 4.39559 4.46004 4.67085 4.82365 4.94857 5.02712 5.07241 5.13352 5.23629 5.32156 5.36171 5.45785 5.48712 5.67865 5.88247 5.93140 5.96336 6.07289 6.15713 6.30509 6.37623 6.39290 6.60074 6.68244 6.68984 6.86627 7.35810 7.56904 7.58875 7.70550 7.84151 8.31559 8.40860 9.17066 9.78341 10.41034 11.34949 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.003088 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.558784 B = 9066.201436 C =10469.612258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.919 5.919 10 Si 0.916 3.084 11 H -0.285 1.285 12 H -0.289 1.289 13 H -0.284 1.284 14 C 0.150 3.850 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.710 5.710 18 C 0.510 3.490 19 O -0.522 6.522 20 C -0.085 4.085 21 C 0.100 3.900 22 C -0.204 4.204 23 S 0.191 5.809 24 C 0.138 3.862 25 N -0.463 5.463 26 C 0.015 3.985 27 C -0.053 4.053 28 N -0.394 5.394 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.024 0.976 34 H 0.253 0.747 35 H 0.013 0.987 36 H 0.112 0.888 37 H 0.395 0.605 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.197 0.803 41 H 0.185 0.815 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.137 11.803 12.164 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.014 3.986 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.567 5.567 10 Si 0.746 3.254 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.023 3.977 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.360 5.360 18 C 0.294 3.706 19 O -0.397 6.397 20 C -0.128 4.128 21 C -0.011 4.011 22 C -0.341 4.341 23 S 0.442 5.558 24 C -0.228 4.228 25 N -0.187 5.187 26 C -0.135 4.135 27 C -0.186 4.186 28 N -0.073 5.073 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.129 0.871 37 H 0.229 0.771 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.214 0.786 41 H 0.202 0.798 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -7.492 9.544 13.854 18.416 hybrid contribution -0.003 1.303 -2.474 2.796 sum -7.495 10.848 11.381 17.417 Atomic orbital electron populations 1.21738 0.94966 1.01927 1.00827 1.22434 0.95211 0.99137 0.96302 0.90810 1.21348 0.90302 0.93193 0.93714 1.44375 1.30856 1.50514 1.07169 1.19024 1.06341 1.17332 0.92886 0.90374 1.24813 0.98753 1.00497 0.96409 1.69781 1.30002 1.46037 1.10875 0.86140 0.79740 0.80614 0.78914 1.21207 1.21520 1.21067 1.22222 0.89195 1.01086 0.85151 1.22749 1.01212 0.92344 0.82299 0.88969 1.45813 1.73676 1.11011 1.05532 1.20102 0.77571 0.88838 0.84073 1.90797 1.47837 1.15202 1.85900 1.20514 1.06526 0.97234 0.88514 1.18213 0.83568 1.03236 0.96062 1.24838 1.03387 1.04035 1.01801 1.84692 0.90894 1.55052 1.25186 1.26280 1.01969 1.02653 0.91895 1.70588 0.96141 1.22921 1.29042 1.22368 0.99633 0.98244 0.93236 1.22745 0.80513 1.09977 1.05359 1.43701 1.07655 1.35863 1.20064 0.93225 0.92816 0.92470 0.95453 0.95830 0.93622 0.96921 0.87082 0.77134 0.87626 0.85749 0.78570 0.79832 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.16 37.16 0.34 -1.43 16 2 C -0.11 -1.75 3.20 -88.78 -0.28 -2.04 16 3 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 4 C 0.14 2.81 6.84 -3.06 -0.02 2.79 16 5 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 6 C -0.23 -6.31 10.27 -15.06 -0.15 -6.46 16 7 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -26.81 10.09 55.49 0.56 -26.25 16 10 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.15 3.55 5.58 -2.53 -0.01 3.53 16 15 C 0.12 2.17 2.87 -65.77 -0.19 1.98 16 16 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 17 N -0.71 -9.87 5.20 -51.72 -0.27 -10.14 16 18 C 0.51 7.46 7.82 -10.99 -0.09 7.37 16 19 O -0.52 -10.43 15.67 5.56 0.09 -10.34 16 20 C -0.08 -0.82 6.00 -29.03 -0.17 -1.00 16 21 C 0.10 1.21 5.24 -81.75 -0.43 0.78 16 22 C -0.20 -2.31 10.81 29.04 0.31 -2.00 16 23 S 0.19 2.26 23.37 -107.50 -2.51 -0.25 16 24 C 0.14 2.00 8.93 -88.71 -0.79 1.21 16 25 N -0.46 -6.95 11.32 -13.55 -0.15 -7.10 16 26 C 0.02 0.18 11.82 -18.04 -0.21 -0.03 16 27 C -0.05 -0.60 11.97 -15.71 -0.19 -0.79 16 28 N -0.39 -5.22 3.19 -59.54 -0.19 -5.41 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.11 3.14 5.87 -51.93 -0.30 2.83 16 37 H 0.40 4.05 8.57 -40.82 -0.35 3.70 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 0.84 8.13 -51.93 -0.42 0.42 16 40 H 0.20 1.78 8.06 -52.48 -0.42 1.35 16 41 H 0.18 1.49 8.06 -52.48 -0.42 1.07 16 42 H 0.18 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -36.11 363.99 -10.21 -46.32 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.63 Total: 2.87 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.99 Total: 3.56 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.63 Total: -64.67 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.51 Total: -0.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.11 -10.21 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080951449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.597 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds