Wall clock time and date at job start Tue Mar 31 2020 18:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.78114 * 2 1 4 4 C 1.54324 * 110.71698 * 236.76132 * 2 1 3 5 5 N 1.47022 * 107.27053 * 219.44319 * 4 2 1 6 6 C 1.36936 * 125.64847 * 178.98921 * 5 4 2 7 7 H 1.08006 * 119.99953 * 0.02562 * 6 5 4 8 8 C 1.38817 * 120.00316 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99513 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00009 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47381 * 59.99853 * 10 8 6 12 12 H 1.48508 * 109.46966 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47365 * 299.99220 * 10 8 6 14 14 C 1.47423 * 108.70712 * 358.94287 * 5 4 2 15 15 C 1.54917 * 104.82905 * 24.12765 * 14 5 4 16 16 H 1.08998 * 111.03321 * 81.07954 * 15 14 5 17 17 N 1.46502 * 111.00240 * 204.91676 * 15 14 5 18 18 C 1.34773 * 120.00052 * 267.19621 * 17 15 14 19 19 O 1.21280 * 119.99823 * 359.97438 * 18 17 15 20 20 C 1.50703 * 120.00053 * 180.02562 * 18 17 15 21 21 C 1.50698 * 109.47062 * 180.02562 * 20 18 17 22 22 C 1.30905 * 121.84104 * 84.94046 * 21 20 18 23 23 S 1.75783 * 109.82095 * 180.02562 * 22 21 20 24 24 C 1.76247 * 90.69926 * 0.02562 * 23 22 21 25 25 N 1.32354 * 141.95408 * 179.97438 * 24 23 22 26 26 C 1.33877 * 109.13518 * 180.02562 * 25 24 23 27 27 C 1.34334 * 108.39037 * 359.97438 * 26 25 24 28 28 N 1.35153 * 109.22353 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.46747 * 296.75793 * 1 2 3 30 30 H 1.09002 * 109.47143 * 56.75962 * 1 2 3 31 31 H 1.08998 * 109.46942 * 176.76404 * 1 2 3 32 32 H 1.08999 * 109.88685 * 338.85904 * 4 2 1 33 33 H 1.09001 * 109.88069 * 100.03262 * 4 2 1 34 34 H 0.97003 * 119.99598 * 180.02562 * 9 8 6 35 35 H 1.08996 * 110.36607 * 265.29454 * 14 5 4 36 36 H 1.09000 * 110.37260 * 142.96254 * 14 5 4 37 37 H 0.96998 * 119.99802 * 87.19839 * 17 15 14 38 38 H 1.08996 * 109.47277 * 59.99632 * 20 18 17 39 39 H 1.09000 * 109.46576 * 299.99699 * 20 18 17 40 40 H 1.08006 * 125.09158 * 0.07183 * 22 21 20 41 41 H 1.08005 * 125.80399 * 180.26577 * 26 25 24 42 42 H 1.08003 * 126.43584 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2444 -1.5508 -0.7391 6 6 4.0043 -2.3968 -1.5019 7 1 3.7617 -2.5499 -2.5432 8 6 5.0865 -3.0577 -0.9371 9 7 5.3825 -2.8706 0.3317 10 14 6.1234 -4.2112 -1.9779 11 1 6.7157 -3.4572 -3.1120 12 1 7.2103 -4.7869 -1.1456 13 1 5.2693 -5.3062 -2.5038 14 6 3.4633 -1.2499 0.6874 15 6 2.0790 -0.7956 1.2138 16 1 1.4448 -1.6533 1.4378 17 7 2.2215 0.0695 2.3875 18 6 2.1874 -0.4630 3.6252 19 8 2.0382 -1.6582 3.7672 20 6 2.3335 0.4269 4.8326 21 6 2.2618 -0.4091 6.0844 22 6 3.3157 -1.0123 6.5733 23 16 2.8759 -1.8942 8.0289 24 6 1.2033 -1.3612 7.8726 25 7 0.0194 -1.4585 8.4563 26 6 -0.8752 -0.7516 7.7547 27 6 -0.2470 -0.1947 6.7060 28 7 1.0854 -0.5820 6.7746 29 1 -0.3633 0.4627 0.9177 30 1 -0.3633 0.5633 -0.8595 31 1 -0.3633 -1.0260 -0.0580 32 1 1.3129 -1.4759 -1.5776 33 1 2.3741 -0.1024 -1.9977 34 1 6.1389 -3.3322 0.7264 35 1 4.1931 -0.4480 0.7983 36 1 3.7960 -2.1427 1.2168 37 1 2.3405 1.0254 2.2739 38 1 1.5301 1.1634 4.8405 39 1 3.2951 0.9386 4.7925 40 1 4.3072 -0.9733 6.1467 41 1 -1.9228 -0.6434 7.9940 42 1 -0.6939 0.4353 5.9511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080951449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:58 Heat of formation + Delta-G solvation = 68.753930 kcal Electronic energy + Delta-G solvation = -26247.271654 eV Core-core repulsion = 22548.437753 eV Total energy + Delta-G solvation = -3698.833901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.65617 -41.02877 -39.29808 -37.73202 -35.63785 -34.34512 -32.43394 -32.13660 -31.40567 -29.84170 -28.74354 -27.34459 -25.41677 -24.42218 -22.92430 -22.45235 -21.63796 -21.36962 -20.70823 -19.23023 -18.91959 -18.26765 -17.41337 -17.01516 -16.78535 -16.49406 -16.14882 -15.98503 -15.59895 -15.42182 -15.21587 -14.51471 -14.43444 -14.35626 -14.23727 -13.95212 -13.74203 -13.38737 -13.26590 -13.03264 -12.83347 -12.75740 -12.58668 -12.27791 -12.22434 -12.04036 -11.84221 -11.65714 -11.49498 -11.42011 -11.28571 -10.97356 -10.76438 -9.98780 -9.88869 -8.90275 -8.67985 -7.78462 -5.24295 -0.13113 -0.05635 0.61672 1.10381 1.44291 1.47786 1.54036 1.56857 1.64265 1.88751 2.23331 2.49233 3.26069 3.31018 3.53981 3.65289 3.69833 3.90388 3.99047 4.04834 4.10254 4.21581 4.31873 4.39114 4.52285 4.56750 4.62101 4.64206 4.66451 4.88665 5.02746 5.06958 5.08879 5.21922 5.29427 5.44201 5.49762 5.51619 5.65621 5.80842 5.82951 6.28284 6.60538 6.67960 7.07308 7.31839 7.76405 8.38122 9.21512 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.014576 B = 0.003088 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.558784 B = 9066.201436 C =10469.612258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.092 4.092 3 H 0.103 0.897 4 C 0.131 3.869 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.083 0.917 8 C -0.067 4.067 9 N -0.946 5.946 10 Si 0.979 3.021 11 H -0.274 1.274 12 H -0.295 1.295 13 H -0.279 1.279 14 C 0.157 3.843 15 C 0.138 3.862 16 H 0.061 0.939 17 N -0.695 5.695 18 C 0.509 3.491 19 O -0.582 6.582 20 C -0.070 4.070 21 C 0.083 3.917 22 C -0.207 4.207 23 S 0.191 5.809 24 C 0.102 3.898 25 N -0.498 5.498 26 C 0.000 4.000 27 C -0.051 4.051 28 N -0.399 5.399 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.033 0.967 34 H 0.245 0.755 35 H -0.003 1.003 36 H 0.060 0.940 37 H 0.418 0.582 38 H 0.144 0.856 39 H 0.161 0.839 40 H 0.216 0.784 41 H 0.214 0.786 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 14.561 11.342 20.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 H 0.121 0.879 4 C 0.006 3.994 5 N -0.354 5.354 6 C -0.371 4.371 7 H 0.101 0.899 8 C -0.260 4.260 9 N -0.595 5.595 10 Si 0.807 3.193 11 H -0.200 1.200 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.030 3.970 15 C 0.032 3.968 16 H 0.080 0.920 17 N -0.347 5.347 18 C 0.295 3.705 19 O -0.462 6.462 20 C -0.112 4.112 21 C -0.027 4.027 22 C -0.343 4.343 23 S 0.441 5.559 24 C -0.263 4.263 25 N -0.223 5.223 26 C -0.149 4.149 27 C -0.184 4.184 28 N -0.078 5.078 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.078 0.922 37 H 0.256 0.744 38 H 0.162 0.838 39 H 0.179 0.821 40 H 0.233 0.767 41 H 0.231 0.769 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -8.667 12.373 13.018 19.942 hybrid contribution 0.319 0.426 -2.237 2.299 sum -8.348 12.799 10.781 18.701 Atomic orbital electron populations 1.21691 0.92210 1.01668 1.03128 1.22374 0.97244 0.99192 0.92341 0.87924 1.21618 0.88590 0.93289 0.95914 1.44687 1.31981 1.50898 1.07853 1.19431 1.06638 1.17580 0.93499 0.89935 1.25662 1.00320 1.02402 0.97593 1.70086 1.30111 1.46974 1.12341 0.85141 0.77916 0.78710 0.77505 1.19987 1.22079 1.20515 1.21899 0.92085 0.98383 0.84630 1.22108 0.97106 0.92896 0.84736 0.92040 1.45577 1.73171 1.11680 1.04281 1.20978 0.75655 0.88617 0.85209 1.90788 1.50393 1.18222 1.86762 1.20578 1.10016 0.96204 0.84395 1.18609 0.83266 1.03970 0.96876 1.25224 1.04413 1.03336 1.01375 1.84578 0.90218 1.55289 1.25769 1.26609 1.02623 1.04034 0.93029 1.70528 0.97057 1.24220 1.30486 1.22998 1.00747 0.97857 0.93269 1.23427 0.79791 1.09492 1.05655 1.43955 1.08520 1.35574 1.19758 0.90938 0.90440 0.94101 0.95643 0.94915 0.94559 0.98487 0.92217 0.74378 0.83836 0.82106 0.76713 0.76916 0.76769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 9.16 71.98 0.66 -2.22 16 2 C -0.09 -2.66 3.20 -9.60 -0.03 -2.69 16 3 H 0.10 2.42 8.00 -2.39 -0.02 2.40 16 4 C 0.13 5.09 6.84 86.73 0.59 5.68 16 5 N -0.63 -32.09 3.39 -691.97 -2.35 -34.44 16 6 C -0.24 -13.67 10.27 84.03 0.86 -12.80 16 7 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 8 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 9 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 10 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.16 7.61 5.58 86.86 0.48 8.10 16 15 C 0.14 4.94 2.87 46.39 0.13 5.08 16 16 H 0.06 2.62 7.44 -2.39 -0.02 2.60 16 17 N -0.70 -17.68 5.20 -435.94 -2.27 -19.94 16 18 C 0.51 13.94 7.82 87.66 0.69 14.62 16 19 O -0.58 -23.46 15.67 -3.03 -0.05 -23.50 16 20 C -0.07 -1.10 6.00 29.10 0.17 -0.93 16 21 C 0.08 1.86 5.24 41.73 0.22 2.08 16 22 C -0.21 -4.53 10.81 67.88 0.73 -3.80 16 23 S 0.19 4.59 23.37 -56.49 -1.32 3.27 16 24 C 0.10 2.97 8.93 179.68 1.60 4.57 16 25 N -0.50 -14.98 11.32 -196.80 -2.23 -17.21 16 26 C 0.00 0.01 11.82 83.49 0.99 0.99 16 27 C -0.05 -1.05 11.97 82.68 0.99 -0.06 16 28 N -0.40 -10.03 3.19 -342.29 -1.09 -11.12 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.05 8.06 -2.39 -0.02 1.03 16 32 H 0.03 1.00 7.76 -2.39 -0.02 0.98 16 33 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.24 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.06 3.55 5.87 -2.39 -0.01 3.54 16 37 H 0.42 6.80 8.57 -92.71 -0.79 6.01 16 38 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.16 1.43 8.13 -2.39 -0.02 1.41 16 40 H 0.22 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 42 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -85.10 363.99 1.76 -83.33 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.26 Total: 13.33 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 8.56 Total: 15.25 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -7.72 Total: -139.84 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.32 Total: 3.27 kcal Total: -85.10 1.76 -83.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080951449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.088 kcal (2) G-P(sol) polarization free energy of solvation -85.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds