Wall clock time and date at job start Tue Mar 31 2020 17:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46738 * 2 1 4 4 H 1.09001 * 109.47060 * 305.37827 * 3 2 1 5 5 C 1.53007 * 109.46873 * 185.38804 * 3 2 1 6 6 N 1.46500 * 109.46979 * 184.99847 * 5 3 2 7 7 C 1.34772 * 120.00133 * 179.97438 * 6 5 3 8 8 O 1.21289 * 120.00056 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00511 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47742 * 179.97438 * 9 7 6 11 11 C 1.76194 * 100.00325 * 179.97438 * 10 9 7 12 12 H 1.08004 * 119.99853 * 0.02562 * 11 10 9 13 13 C 1.38799 * 120.00084 * 180.02562 * 11 10 9 14 14 N 1.31631 * 119.99893 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00086 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46990 * 60.00157 * 15 13 11 17 17 H 1.48497 * 109.47375 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47138 * 300.00112 * 15 13 11 19 19 N 1.46497 * 109.47442 * 65.38718 * 3 2 1 20 20 C 1.38589 * 119.99557 * 245.37489 * 19 3 2 21 21 C 1.39363 * 119.53753 * 6.02698 * 20 19 3 22 22 C 1.36887 * 119.38570 * 180.22632 * 21 20 19 23 23 C 1.40352 * 118.48749 * 359.50836 * 22 21 20 24 24 C 1.43206 * 120.47930 * 180.27071 * 23 22 21 25 25 N 8.42847 * 60.50171 * 10.34761 * 2 1 3 26 26 C 1.39582 * 119.03829 * 0.24766 * 23 22 21 27 27 N 1.31712 * 120.51073 * 0.02562 * 26 23 22 28 28 H 1.08998 * 109.47646 * 55.37021 * 1 2 3 29 29 H 1.09004 * 109.47092 * 175.37531 * 1 2 3 30 30 H 1.09006 * 109.46779 * 295.36609 * 1 2 3 31 31 H 1.08993 * 109.47191 * 240.00185 * 2 1 3 32 32 H 1.09000 * 109.47252 * 119.99368 * 2 1 3 33 33 H 1.09003 * 109.46607 * 304.99469 * 5 3 2 34 34 H 1.08993 * 109.47411 * 64.99441 * 5 3 2 35 35 H 0.97006 * 120.00152 * 359.97438 * 6 5 3 36 36 H 1.09004 * 109.47129 * 300.00354 * 9 7 6 37 37 H 1.09007 * 109.47169 * 60.00062 * 9 7 6 38 38 H 0.96998 * 119.99690 * 179.97438 * 14 13 11 39 39 H 0.97001 * 120.00342 * 65.37473 * 19 3 2 40 40 H 1.08005 * 120.30296 * 0.02562 * 21 20 19 41 41 H 1.07996 * 120.75248 * 179.77673 * 22 21 20 42 42 H 1.08005 * 119.73785 * 180.02562 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6000 1.9834 -0.8379 5 6 3.5640 1.4447 -0.1355 6 7 4.0629 2.8169 -0.0158 7 6 5.3850 3.0634 -0.1036 8 8 6.1617 2.1491 -0.2820 9 6 5.8982 4.4749 0.0189 10 16 7.7013 4.4774 -0.1396 11 6 8.0216 6.2010 0.0361 12 1 7.2036 6.8893 0.1901 13 6 9.3250 6.6743 -0.0233 14 7 10.3219 5.8353 -0.2104 15 14 9.6646 8.5017 0.1624 16 1 9.1750 8.9642 1.4859 17 1 11.1258 8.7465 0.0615 18 1 8.9629 9.2473 -0.9131 19 7 1.6603 2.0947 1.2557 20 6 0.7682 3.1552 1.2435 21 6 0.1416 3.5123 0.0510 22 6 -0.7356 4.5632 0.0416 23 6 -0.9811 5.2411 1.2458 24 6 -1.8951 6.3427 1.2859 25 7 -2.6202 7.2166 1.3177 26 6 -0.3217 4.8255 2.4038 27 7 0.5191 3.8124 2.3675 28 1 -0.3634 0.5840 -0.8456 29 1 -0.3633 -1.0244 -0.0829 30 1 -0.3633 0.4403 0.9287 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.9995 0.8298 0.6521 34 1 3.8429 1.0402 -1.1084 35 1 3.4416 3.5483 0.1266 36 1 5.4629 5.0894 -0.7691 37 1 5.6189 4.8800 0.9916 38 1 11.2328 6.1661 -0.2522 39 1 2.0334 1.7844 2.0956 40 1 0.3486 2.9669 -0.8579 41 1 -1.2307 4.8610 -0.8708 42 1 -0.5026 5.3389 3.3367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102986676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:48 Heat of formation + Delta-G solvation = 27.977072 kcal Electronic energy + Delta-G solvation = -24895.080815 eV Core-core repulsion = 21194.478696 eV Total energy + Delta-G solvation = -3700.602119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00131 -39.41231 -37.97739 -36.71661 -34.17273 -33.55498 -32.86404 -32.44188 -30.61183 -29.77279 -27.87249 -25.50950 -24.61146 -23.98506 -23.49841 -21.43157 -20.32877 -19.31300 -18.42039 -17.93986 -17.37469 -16.39980 -16.08433 -15.91675 -15.28441 -15.10502 -14.81859 -14.78775 -14.50651 -14.26949 -13.98525 -13.90759 -13.60593 -13.52635 -13.39371 -13.20977 -12.97961 -12.69833 -12.57247 -12.42137 -12.07677 -11.85589 -11.58952 -11.28856 -11.06101 -11.04482 -10.79719 -10.66708 -10.37826 -9.98494 -9.84273 -9.48634 -9.08346 -8.99736 -8.26998 -8.24707 -6.52210 -6.23022 -3.93917 0.40977 0.84457 2.38296 2.50914 2.69612 2.96827 3.02889 3.23130 3.26653 3.29609 3.55256 3.61263 3.64308 4.03840 4.19253 4.21603 4.30980 4.42474 4.43532 4.49615 4.79887 4.85306 4.97500 5.12221 5.13324 5.20431 5.24392 5.31582 5.41534 5.48081 5.50652 5.53706 5.66999 5.71033 5.79278 5.85130 5.91081 6.10938 6.40744 6.49921 6.98894 7.22703 7.57639 7.59612 7.61046 8.33763 8.52910 9.22396 10.84357 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.002759 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.893121 B =10145.325839 C =12555.056670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.134 3.866 4 H 0.103 0.897 5 C 0.109 3.891 6 N -0.736 5.736 7 C 0.533 3.467 8 O -0.517 6.517 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.703 5.703 20 C 0.433 3.567 21 C -0.245 4.245 22 C 0.018 3.982 23 C -0.155 4.155 24 C 0.267 3.733 25 N -0.429 5.429 26 C 0.213 3.787 27 N -0.540 5.540 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.412 0.588 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.592 -10.492 0.720 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.028 3.972 4 H 0.121 0.879 5 C -0.017 4.017 6 N -0.391 5.391 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.332 5.332 20 C 0.195 3.805 21 C -0.269 4.269 22 C -0.010 4.010 23 C -0.165 4.165 24 C -0.049 4.049 25 N -0.105 5.105 26 C 0.050 3.950 27 N -0.257 5.257 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.696 -11.100 1.000 26.186 hybrid contribution -0.928 2.397 -0.027 2.571 sum -24.624 -8.703 0.973 26.135 Atomic orbital electron populations 1.21738 0.94921 1.01956 1.02109 1.21891 0.96842 0.94861 1.03714 1.21614 0.94283 0.94529 0.86770 0.87949 1.21679 0.91717 0.84989 1.03265 1.45906 1.07885 1.08700 1.76653 1.20305 0.81310 0.91131 0.75312 1.90711 1.55450 1.46173 1.46739 1.23526 1.06869 0.95143 1.04879 1.85366 0.92002 1.11021 1.94844 1.22824 0.95503 0.92410 1.57724 0.90984 1.24986 0.95052 0.98966 0.94517 1.70005 0.99583 1.34652 1.46074 0.86227 0.77383 0.83042 0.78886 1.19905 1.20792 1.19924 1.44666 1.46013 1.32356 1.10161 1.18610 0.86472 0.86083 0.89325 1.21182 1.03877 1.03004 0.98864 1.21059 0.92411 0.90881 0.96609 1.16704 1.04431 0.98545 0.96789 1.25388 0.92839 0.92643 0.94002 1.81279 1.11025 1.11103 1.07131 1.22618 0.86597 0.89090 0.96672 1.67376 1.20302 1.10588 1.27441 0.92595 0.92399 0.92542 0.89937 0.90832 0.90950 0.89990 0.76900 0.89296 0.89287 0.92111 0.75156 0.83888 0.84081 0.81707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.75 37.16 0.36 -0.24 16 2 C -0.13 -0.54 5.61 -26.73 -0.15 -0.69 16 3 C 0.13 0.68 2.37 -67.93 -0.16 0.51 16 4 H 0.10 0.42 5.33 -51.93 -0.28 0.15 16 5 C 0.11 0.94 5.37 -4.04 -0.02 0.91 16 6 N -0.74 -8.56 5.39 -60.29 -0.32 -8.88 16 7 C 0.53 9.34 7.85 -10.99 -0.09 9.26 16 8 O -0.52 -11.10 15.86 5.55 0.09 -11.01 16 9 C -0.15 -3.02 6.16 36.00 0.22 -2.80 16 10 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 15 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 19 N -0.70 -4.10 4.06 -53.94 -0.22 -4.32 16 20 C 0.43 2.95 7.63 -155.20 -1.18 1.77 16 21 C -0.24 -1.33 9.22 -39.65 -0.37 -1.69 16 22 C 0.02 0.10 9.85 -39.28 -0.39 -0.29 16 23 C -0.16 -1.08 5.75 -106.67 -0.61 -1.70 16 24 C 0.27 2.40 15.37 -22.47 -0.35 2.05 16 25 N -0.43 -5.00 18.54 41.83 0.78 -4.22 16 26 C 0.21 1.50 10.92 -17.10 -0.19 1.31 16 27 N -0.54 -4.40 10.39 -12.11 -0.13 -4.53 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.29 7.89 -51.93 -0.41 -0.12 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.40 3.94 8.14 -40.82 -0.33 3.60 16 36 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 37 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 38 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.41 2.55 8.95 -40.82 -0.37 2.19 16 40 H 0.14 0.52 5.79 -52.48 -0.30 0.22 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 42 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -35.79 383.20 -8.71 -44.51 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.46 Total: -0.10 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.72 Total: -4.48 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.84 Total: -47.24 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.79 -8.71 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.484 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds