Wall clock time and date at job start Tue Mar 31 2020 17:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 H 1.08998 * 109.47245 * 54.51033 * 3 2 1 5 5 C 1.52996 * 109.46735 * 174.51153 * 3 2 1 6 6 N 1.46499 * 109.47174 * 174.99720 * 5 3 2 7 7 C 1.34770 * 120.00329 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00112 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00162 * 180.02562 * 7 6 5 10 10 S 1.81008 * 109.47123 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99914 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99885 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99773 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47082 * 59.99704 * 15 13 11 17 17 H 1.48500 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47186 * 299.99777 * 15 13 11 19 19 N 1.46500 * 109.46906 * 294.51071 * 3 2 1 20 20 C 1.38585 * 119.99920 * 124.12660 * 19 3 2 21 21 C 1.39354 * 119.53143 * 354.16017 * 20 19 3 22 22 C 1.36896 * 119.38314 * 179.97438 * 21 20 19 23 23 C 1.40350 * 118.48796 * 0.25421 * 22 21 20 24 24 C 1.43202 * 120.48087 * 179.75407 * 23 22 21 25 25 N 8.56706 * 66.68618 * 350.68126 * 2 1 3 26 26 C 1.39579 * 119.04087 * 359.50147 * 23 22 21 27 27 N 1.31719 * 120.50490 * 0.50940 * 26 23 22 28 28 H 1.09000 * 109.46795 * 175.53744 * 1 2 3 29 29 H 1.08997 * 109.46889 * 295.53736 * 1 2 3 30 30 H 1.09004 * 109.46827 * 55.53596 * 1 2 3 31 31 H 1.08997 * 109.46368 * 239.99642 * 2 1 3 32 32 H 1.09001 * 109.46485 * 120.00115 * 2 1 3 33 33 H 1.08997 * 109.47275 * 294.99860 * 5 3 2 34 34 H 1.09002 * 109.47297 * 54.99994 * 5 3 2 35 35 H 0.97000 * 120.00173 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.47201 * 300.00044 * 9 7 6 37 37 H 1.09002 * 109.46932 * 60.00346 * 9 7 6 38 38 H 0.97004 * 119.99655 * 180.02562 * 14 13 11 39 39 H 0.97006 * 120.00144 * 304.11500 * 19 3 2 40 40 H 1.08001 * 120.31012 * 359.96053 * 21 20 19 41 41 H 1.08001 * 120.75570 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.74713 * 180.22805 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5987 1.9839 0.8367 5 6 3.5638 1.4446 0.1380 6 7 4.0631 2.8167 0.0183 7 6 5.3849 3.0632 0.1090 8 8 6.1613 2.1491 0.2894 9 6 5.8984 4.4747 -0.0135 10 16 7.7012 4.4773 0.1495 11 6 8.0219 6.2008 -0.0271 12 1 7.2044 6.8890 -0.1837 13 6 9.3253 6.6739 0.0340 14 7 10.3217 5.8351 0.2244 15 14 9.6654 8.5011 -0.1540 16 1 8.9616 9.2486 0.9191 17 1 11.1265 8.7459 -0.0507 18 1 9.1784 8.9615 -1.4792 19 7 1.6626 2.0939 -1.2568 20 6 0.9311 3.2708 -1.2348 21 6 0.4552 3.7611 -0.0203 22 6 -0.2666 4.9242 -0.0021 23 6 -0.5068 5.5821 -1.2183 24 6 -1.2613 6.7989 -1.2494 25 7 -1.8604 7.7637 -1.2740 26 6 0.0048 5.0361 -2.3966 27 7 0.6945 3.9143 -2.3693 28 1 -0.3633 -1.0246 -0.0800 29 1 -0.3633 0.4430 0.9272 30 1 -0.3633 0.5816 -0.8473 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8411 1.0408 1.1117 34 1 4.0008 0.8292 -0.6484 35 1 3.4422 3.5480 -0.1256 36 1 5.6215 4.8789 -0.9873 37 1 5.4613 5.0900 0.7729 38 1 11.2326 6.1659 0.2675 39 1 1.9248 1.7015 -2.1043 40 1 0.6536 3.2284 0.8980 41 1 -0.6464 5.3240 0.9265 42 1 -0.1701 5.5349 -3.3385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102986677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:52 Heat of formation + Delta-G solvation = 28.681708 kcal Electronic energy + Delta-G solvation = -25003.304163 eV Core-core repulsion = 21302.732599 eV Total energy + Delta-G solvation = -3700.571563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99830 -39.39889 -37.96924 -36.69729 -34.14315 -33.55279 -32.90640 -32.43831 -30.55053 -29.77973 -27.88103 -25.50618 -24.60339 -24.00265 -23.47387 -21.42506 -20.32307 -19.30416 -18.40614 -17.93448 -17.36379 -16.41470 -16.08521 -15.91325 -15.25176 -15.07713 -14.82901 -14.80359 -14.50774 -14.25179 -13.98341 -13.89526 -13.59672 -13.52124 -13.38679 -13.19666 -12.96820 -12.69290 -12.57982 -12.38151 -12.07071 -11.84820 -11.59019 -11.28640 -11.05749 -11.04138 -10.79428 -10.66320 -10.36943 -9.97624 -9.83873 -9.48005 -9.07886 -8.98736 -8.26664 -8.23792 -6.51803 -6.22689 -3.93553 0.42122 0.85450 2.40209 2.51461 2.71238 2.97514 3.03661 3.23422 3.26946 3.29952 3.56556 3.62409 3.65281 4.04430 4.19621 4.23088 4.32129 4.42805 4.44362 4.48159 4.79451 4.86502 4.97854 5.12568 5.13954 5.21566 5.23960 5.32437 5.42915 5.48858 5.51501 5.52960 5.67682 5.71784 5.79010 5.85521 5.92055 6.11281 6.41203 6.50928 6.99287 7.24752 7.58011 7.59978 7.61753 8.34124 8.53634 9.22747 10.84681 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.002963 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.938977 B = 9446.639692 C =12006.996856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.133 3.867 4 H 0.103 0.897 5 C 0.107 3.893 6 N -0.736 5.736 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.154 4.154 10 S -0.059 6.059 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.702 5.702 20 C 0.432 3.568 21 C -0.247 4.247 22 C 0.019 3.981 23 C -0.155 4.155 24 C 0.266 3.734 25 N -0.429 5.429 26 C 0.213 3.787 27 N -0.540 5.540 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.411 0.589 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.613 -10.422 -0.747 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.027 3.973 4 H 0.121 0.879 5 C -0.018 4.018 6 N -0.391 5.391 7 C 0.319 3.681 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.332 5.332 20 C 0.194 3.806 21 C -0.271 4.271 22 C -0.008 4.008 23 C -0.164 4.164 24 C -0.049 4.049 25 N -0.105 5.105 26 C 0.050 3.950 27 N -0.257 5.257 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.230 0.770 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -23.629 -10.978 -1.026 26.075 hybrid contribution -0.906 2.420 0.026 2.584 sum -24.535 -8.558 -1.001 26.004 Atomic orbital electron populations 1.21742 0.94885 1.02052 1.02155 1.21850 0.96850 0.94631 1.03786 1.21609 0.94168 0.94694 0.86803 0.87893 1.21723 0.91982 0.84954 1.03167 1.45897 1.07896 1.08711 1.76598 1.20301 0.81312 0.91125 0.75328 1.90707 1.55450 1.46168 1.46731 1.23529 1.06878 0.95159 1.04858 1.85365 0.92033 1.11032 1.94778 1.22828 0.95529 0.92434 1.57686 0.90983 1.24983 0.95049 0.98953 0.94513 1.70006 0.99603 1.34651 1.46053 0.86234 0.77385 0.83056 0.78897 1.19916 1.20787 1.19901 1.44654 1.56410 1.22616 1.09491 1.18613 0.86657 0.85962 0.89369 1.21188 1.07211 1.00386 0.98358 1.21069 0.91105 0.91749 0.96921 1.16704 1.08935 0.94537 0.96207 1.25382 0.92969 0.92508 0.94045 1.81283 1.10827 1.11330 1.07019 1.22621 0.86955 0.88530 0.96844 1.67376 1.20175 1.10393 1.27747 0.92379 0.92601 0.92407 0.90824 0.89825 0.90088 0.90984 0.77016 0.89322 0.89302 0.92114 0.75193 0.83844 0.84022 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.86 37.16 0.37 -0.24 16 2 C -0.13 -0.53 5.61 -26.72 -0.15 -0.67 16 3 C 0.13 0.68 2.41 -67.93 -0.16 0.52 16 4 H 0.10 0.43 5.24 -51.93 -0.27 0.16 16 5 C 0.11 0.94 5.37 -4.04 -0.02 0.92 16 6 N -0.74 -8.71 5.39 -60.30 -0.32 -9.04 16 7 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 8 O -0.52 -11.16 15.86 5.56 0.09 -11.08 16 9 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 10 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 11 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 15 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 19 N -0.70 -4.14 3.99 -53.95 -0.22 -4.35 16 20 C 0.43 3.02 7.12 -155.21 -1.10 1.92 16 21 C -0.25 -1.41 9.27 -39.65 -0.37 -1.77 16 22 C 0.02 0.11 9.85 -39.27 -0.39 -0.28 16 23 C -0.15 -1.12 5.75 -106.68 -0.61 -1.73 16 24 C 0.27 2.48 15.37 -22.47 -0.35 2.13 16 25 N -0.43 -5.13 18.54 41.84 0.78 -4.35 16 26 C 0.21 1.55 10.92 -17.10 -0.19 1.36 16 27 N -0.54 -4.48 10.39 -12.12 -0.13 -4.61 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 4.03 7.68 -40.82 -0.31 3.71 16 36 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.41 2.50 8.95 -40.82 -0.37 2.13 16 40 H 0.14 0.56 5.69 -52.49 -0.30 0.26 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -35.95 381.92 -8.61 -44.56 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.42 Total: 0.10 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.64 Total: -4.26 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.84 Total: -47.69 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.95 -8.61 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.239 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds