Wall clock time and date at job start Tue Mar 31 2020 17:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 C 1.53000 * 109.47011 * 2 1 4 4 H 1.08998 * 109.47245 * 54.51033 * 3 2 1 5 5 C 1.52996 * 109.46735 * 174.51153 * 3 2 1 6 6 N 1.46499 * 109.47174 * 174.99720 * 5 3 2 7 7 C 1.34770 * 120.00329 * 179.97438 * 6 5 3 8 8 O 1.21281 * 120.00112 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00162 * 180.02562 * 7 6 5 10 10 S 1.81008 * 109.47123 * 180.02562 * 9 7 6 11 11 C 1.76201 * 99.99914 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99945 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99768 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99885 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99773 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47082 * 59.99704 * 15 13 11 17 17 H 1.48500 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47186 * 299.99777 * 15 13 11 19 19 N 1.46500 * 109.46906 * 294.51071 * 3 2 1 20 20 C 1.38585 * 119.99920 * 124.12660 * 19 3 2 21 21 C 1.39354 * 119.53143 * 354.16017 * 20 19 3 22 22 C 1.36896 * 119.38314 * 179.97438 * 21 20 19 23 23 C 1.40350 * 118.48796 * 0.25421 * 22 21 20 24 24 C 1.43202 * 120.48087 * 179.75407 * 23 22 21 25 25 N 8.56706 * 66.68618 * 350.68126 * 2 1 3 26 26 C 1.39579 * 119.04087 * 359.50147 * 23 22 21 27 27 N 1.31719 * 120.50490 * 0.50940 * 26 23 22 28 28 H 1.09000 * 109.46795 * 175.53744 * 1 2 3 29 29 H 1.08997 * 109.46889 * 295.53736 * 1 2 3 30 30 H 1.09004 * 109.46827 * 55.53596 * 1 2 3 31 31 H 1.08997 * 109.46368 * 239.99642 * 2 1 3 32 32 H 1.09001 * 109.46485 * 120.00115 * 2 1 3 33 33 H 1.08997 * 109.47275 * 294.99860 * 5 3 2 34 34 H 1.09002 * 109.47297 * 54.99994 * 5 3 2 35 35 H 0.97000 * 120.00173 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.47201 * 300.00044 * 9 7 6 37 37 H 1.09002 * 109.46932 * 60.00346 * 9 7 6 38 38 H 0.97004 * 119.99655 * 180.02562 * 14 13 11 39 39 H 0.97006 * 120.00144 * 304.11500 * 19 3 2 40 40 H 1.08001 * 120.31012 * 359.96053 * 21 20 19 41 41 H 1.08001 * 120.75570 * 179.97438 * 22 21 20 42 42 H 1.07999 * 119.74713 * 180.22805 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5987 1.9839 0.8367 5 6 3.5638 1.4446 0.1380 6 7 4.0631 2.8167 0.0183 7 6 5.3849 3.0632 0.1090 8 8 6.1613 2.1491 0.2894 9 6 5.8984 4.4747 -0.0135 10 16 7.7012 4.4773 0.1495 11 6 8.0219 6.2008 -0.0271 12 1 7.2044 6.8890 -0.1837 13 6 9.3253 6.6739 0.0340 14 7 10.3217 5.8351 0.2244 15 14 9.6654 8.5011 -0.1540 16 1 8.9616 9.2486 0.9191 17 1 11.1265 8.7459 -0.0507 18 1 9.1784 8.9615 -1.4792 19 7 1.6626 2.0939 -1.2568 20 6 0.9311 3.2708 -1.2348 21 6 0.4552 3.7611 -0.0203 22 6 -0.2666 4.9242 -0.0021 23 6 -0.5068 5.5821 -1.2183 24 6 -1.2613 6.7989 -1.2494 25 7 -1.8604 7.7637 -1.2740 26 6 0.0048 5.0361 -2.3966 27 7 0.6945 3.9143 -2.3693 28 1 -0.3633 -1.0246 -0.0800 29 1 -0.3633 0.4430 0.9272 30 1 -0.3633 0.5816 -0.8473 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8411 1.0408 1.1117 34 1 4.0008 0.8292 -0.6484 35 1 3.4422 3.5480 -0.1256 36 1 5.6215 4.8789 -0.9873 37 1 5.4613 5.0900 0.7729 38 1 11.2326 6.1659 0.2675 39 1 1.9248 1.7015 -2.1043 40 1 0.6536 3.2284 0.8980 41 1 -0.6464 5.3240 0.9265 42 1 -0.1701 5.5349 -3.3385 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102986677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:51 Heat of formation + Delta-G solvation = 4.221128 kcal Electronic energy + Delta-G solvation = -25004.364853 eV Core-core repulsion = 21302.732599 eV Total energy + Delta-G solvation = -3701.632254 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54645 -40.58942 -38.70648 -37.46177 -35.19236 -34.58617 -34.08851 -33.38466 -31.51328 -30.65956 -28.76979 -27.63875 -25.19536 -24.55487 -24.01931 -22.03284 -21.50211 -19.93408 -19.79220 -18.89285 -18.03301 -17.75943 -17.18786 -16.88016 -16.68012 -16.11803 -15.86485 -15.77556 -15.32618 -15.05015 -14.95206 -14.64278 -14.50936 -14.45161 -14.17145 -14.10298 -14.01479 -13.82689 -13.40507 -13.20148 -13.17321 -12.88088 -12.77911 -12.66002 -12.49685 -11.99973 -11.75676 -11.65078 -11.25437 -11.13505 -10.93555 -10.85310 -10.49924 -10.29026 -10.11298 -8.76458 -8.66451 -8.35112 -6.12771 -0.13364 0.38453 1.26693 1.43043 1.46141 1.56102 1.61802 1.69679 1.99927 2.05814 2.26063 2.31386 2.99004 2.99578 3.01745 3.31431 3.57026 3.68011 3.88964 3.89801 3.95462 4.00328 4.10803 4.27270 4.36790 4.47040 4.49542 4.62481 4.68958 4.76574 4.82860 4.93001 5.01067 5.11064 5.23060 5.28339 5.41087 5.42204 5.44970 5.49586 5.95447 6.19113 6.44133 6.46553 6.57107 7.06420 7.09759 7.22968 8.73763 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.002963 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.938977 B = 9446.639692 C =12006.996856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.146 3.854 4 H 0.122 0.878 5 C 0.104 3.896 6 N -0.709 5.709 7 C 0.535 3.465 8 O -0.562 6.562 9 C -0.132 4.132 10 S -0.145 6.145 11 C -0.549 4.549 12 H 0.080 0.920 13 C 0.016 3.984 14 N -0.910 5.910 15 Si 0.995 3.005 16 H -0.262 1.262 17 H -0.278 1.278 18 H -0.264 1.264 19 N -0.700 5.700 20 C 0.425 3.575 21 C -0.243 4.243 22 C 0.024 3.976 23 C -0.164 4.164 24 C 0.292 3.708 25 N -0.481 5.481 26 C 0.211 3.789 27 N -0.563 5.563 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.408 0.592 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.272 0.728 39 H 0.410 0.590 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.429 -10.109 -0.209 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C 0.041 3.959 4 H 0.139 0.861 5 C -0.021 4.021 6 N -0.362 5.362 7 C 0.321 3.679 8 O -0.440 6.440 9 C -0.283 4.283 10 S 0.082 5.918 11 C -0.697 4.697 12 H 0.099 0.901 13 C -0.189 4.189 14 N -0.546 5.546 15 Si 0.817 3.183 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.188 1.188 19 N -0.329 5.329 20 C 0.187 3.813 21 C -0.268 4.268 22 C -0.004 4.004 23 C -0.173 4.173 24 C -0.022 4.022 25 N -0.158 5.158 26 C 0.048 3.952 27 N -0.281 5.281 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.184 0.816 41 H 0.180 0.820 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -25.511 -10.673 -0.493 27.658 hybrid contribution -0.440 2.182 -0.162 2.232 sum -25.952 -8.491 -0.655 27.313 Atomic orbital electron populations 1.21702 0.94523 1.02087 1.02140 1.21818 0.96937 0.93573 1.04268 1.21567 0.91386 0.95885 0.87075 0.86062 1.21980 0.94397 0.82621 1.03099 1.45632 1.05836 1.10687 1.74064 1.19933 0.82912 0.89566 0.75488 1.90698 1.57039 1.46914 1.49353 1.23379 1.01214 0.97513 1.06210 1.85498 0.99359 1.11783 1.95149 1.23171 0.96215 0.92691 1.57603 0.90143 1.26082 0.94721 1.04303 0.93816 1.70166 1.00110 1.37148 1.47200 0.85054 0.77430 0.76421 0.79416 1.18663 1.20281 1.18823 1.44717 1.56094 1.22351 1.09734 1.18837 0.86752 0.86042 0.89678 1.21394 1.06525 1.00227 0.98607 1.21325 0.90434 0.91469 0.97124 1.16746 1.09453 0.94058 0.97055 1.25619 0.91907 0.92203 0.92487 1.81305 1.12787 1.13014 1.08731 1.22821 0.86561 0.88340 0.97454 1.67382 1.21022 1.10958 1.28690 0.92243 0.91786 0.93343 0.90977 0.88846 0.89825 0.91775 0.75595 0.88030 0.87428 0.91950 0.75315 0.81619 0.81975 0.80584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.86 71.99 0.71 -0.06 16 2 C -0.13 -0.66 5.61 30.60 0.17 -0.49 16 3 C 0.15 1.06 2.41 44.99 0.11 1.17 16 4 H 0.12 0.49 5.24 -2.39 -0.01 0.48 16 5 C 0.10 1.59 5.37 86.38 0.46 2.05 16 6 N -0.71 -15.20 5.39 -463.08 -2.49 -17.70 16 7 C 0.54 18.44 7.85 87.66 0.69 19.13 16 8 O -0.56 -24.45 15.86 -3.03 -0.05 -24.50 16 9 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 10 S -0.14 -7.95 20.57 -56.49 -1.16 -9.11 16 11 C -0.55 -31.28 9.50 67.95 0.65 -30.64 16 12 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 13 C 0.02 0.90 5.49 84.86 0.47 1.36 16 14 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 15 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 19 N -0.70 -6.52 3.99 -324.60 -1.30 -7.81 16 20 C 0.42 4.86 7.12 133.21 0.95 5.81 16 21 C -0.24 -1.94 9.27 22.22 0.21 -1.74 16 22 C 0.02 0.21 9.85 22.47 0.22 0.43 16 23 C -0.16 -2.07 5.75 -21.20 -0.12 -2.20 16 24 C 0.29 5.16 15.37 88.33 1.36 6.51 16 25 N -0.48 -11.39 18.54 19.00 0.35 -11.03 16 26 C 0.21 2.74 10.92 85.03 0.93 3.66 16 27 N -0.56 -8.35 10.39 -192.24 -2.00 -10.34 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.05 0.36 7.65 -2.38 -0.02 0.34 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.41 7.03 7.68 -92.71 -0.71 6.32 16 36 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 37 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.41 4.19 8.95 -92.70 -0.83 3.36 16 40 H 0.17 0.54 5.69 -2.91 -0.02 0.52 16 41 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -80.51 381.92 2.44 -78.07 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -0.46 Total: 11.81 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 7.23 Total: 0.34 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -5.15 Total: -102.22 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.05 Total: -24.50 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -80.51 2.44 -78.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102986677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.293 kcal (2) G-P(sol) polarization free energy of solvation -80.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds