Wall clock time and date at job start Tue Mar 31 2020 17:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47184 * 2 1 4 4 H 1.09004 * 109.46947 * 55.00447 * 3 2 1 5 5 C 1.52995 * 109.47078 * 175.00203 * 3 2 1 6 6 N 1.46505 * 109.47097 * 175.00305 * 5 3 2 7 7 C 1.34781 * 119.99798 * 180.02562 * 6 5 3 8 8 O 1.21279 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99648 * 179.97438 * 7 6 5 10 10 S 1.80999 * 109.47104 * 179.97438 * 9 7 6 11 11 C 1.76193 * 100.00193 * 180.02562 * 10 9 7 12 12 H 1.08003 * 120.00078 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00175 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99726 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99923 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46879 * 90.00507 * 15 13 11 17 17 H 1.48504 * 109.46964 * 209.99834 * 15 13 11 18 18 H 1.48499 * 109.47542 * 330.00207 * 15 13 11 19 19 N 1.46496 * 109.47220 * 295.00187 * 3 2 1 20 20 C 1.39234 * 120.00155 * 85.00039 * 19 3 2 21 21 C 1.39459 * 120.39200 * 180.25385 * 20 19 3 22 22 C 1.38194 * 118.45032 * 180.25823 * 21 20 19 23 23 C 1.39623 * 119.14408 * 359.75595 * 22 21 20 24 24 C 1.43198 * 119.65194 * 179.97438 * 23 22 21 25 25 N 7.86005 * 40.80623 * 341.45234 * 2 1 3 26 26 N 1.32876 * 120.69767 * 359.97310 * 23 22 21 27 27 C 1.31421 * 121.69174 * 0.02562 * 26 23 22 28 28 H 1.08998 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46849 * 300.00017 * 1 2 3 30 30 H 1.09003 * 109.47394 * 59.99667 * 1 2 3 31 31 H 1.08999 * 109.47159 * 240.00304 * 2 1 3 32 32 H 1.08994 * 109.47426 * 120.00350 * 2 1 3 33 33 H 1.09004 * 109.47411 * 295.00418 * 5 3 2 34 34 H 1.08997 * 109.47411 * 55.00245 * 5 3 2 35 35 H 0.96992 * 119.99784 * 359.97438 * 6 5 3 36 36 H 1.08995 * 109.47270 * 299.99440 * 9 7 6 37 37 H 1.08997 * 109.47027 * 59.99514 * 9 7 6 38 38 H 0.97006 * 119.99791 * 179.97438 * 14 13 11 39 39 H 0.96999 * 120.00032 * 264.99896 * 19 3 2 40 40 H 1.08001 * 120.77364 * 0.02562 * 21 20 19 41 41 H 1.08003 * 120.42808 * 179.76895 * 22 21 20 42 42 H 1.08002 * 119.60061 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1635 2.1482 0.2572 9 6 5.8983 4.4747 -0.0379 10 16 7.7022 4.4769 0.1109 11 6 8.0216 6.2007 -0.0647 12 1 7.2029 6.8892 -0.2134 13 6 9.3254 6.6738 -0.0118 14 7 10.3233 5.8346 0.1689 15 14 9.6641 8.5014 -0.1987 16 1 9.6386 9.1486 1.1376 17 1 10.9998 8.6965 -0.8178 18 1 8.6233 9.1118 -1.0644 19 7 1.6525 2.0975 -1.2517 20 6 0.3949 2.6832 -1.3707 21 6 0.0155 3.3043 -2.5603 22 6 -1.2399 3.8774 -2.6325 23 6 -2.0825 3.8112 -1.5212 24 6 -3.3855 4.4019 -1.5839 25 7 -4.4195 4.8698 -1.6339 26 7 -1.6881 3.2059 -0.4060 27 6 -0.5012 2.6510 -0.3043 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8500 1.0376 1.0960 34 1 3.9954 0.8312 -0.6660 35 1 3.4411 3.5482 -0.1315 36 1 5.6130 4.8811 -1.0082 37 1 5.4680 5.0881 0.7537 38 1 11.2345 6.1653 0.2055 39 1 2.2719 2.1232 -1.9977 40 1 0.6886 3.3399 -3.4042 41 1 -1.5651 4.3699 -3.5370 42 1 -0.2153 2.1682 0.6185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102987357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:06 Heat of formation + Delta-G solvation = 7.121232 kcal Electronic energy + Delta-G solvation = -24723.975070 eV Core-core repulsion = 21022.468575 eV Total energy + Delta-G solvation = -3701.506496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61184 -40.60897 -38.82404 -37.41353 -35.39207 -34.57034 -34.30062 -32.79342 -31.74557 -30.66943 -28.57694 -27.61568 -25.23996 -24.70038 -24.13809 -21.88776 -21.40994 -20.40614 -19.84514 -18.61454 -17.95286 -17.60903 -17.07908 -16.86440 -16.58212 -16.40728 -16.09098 -15.77948 -15.50784 -15.01716 -14.98708 -14.61454 -14.52949 -14.40135 -14.16625 -13.95105 -13.84451 -13.72393 -13.50320 -13.16886 -13.14977 -12.99004 -12.87391 -12.62373 -12.45475 -12.08528 -11.80085 -11.70051 -11.47071 -11.13332 -10.92675 -10.58047 -10.55634 -10.25323 -10.11321 -8.64266 -8.55458 -8.33784 -6.10858 -0.15769 0.36041 1.28884 1.42948 1.48609 1.56387 1.58495 1.64442 1.90114 2.14056 2.27992 2.35576 2.75618 3.00612 3.01625 3.33832 3.56977 3.70699 3.80201 3.95120 4.07732 4.11225 4.15036 4.20895 4.32628 4.42712 4.54767 4.58668 4.64587 4.76749 4.80317 4.91531 4.93413 5.10080 5.23606 5.28506 5.42429 5.43491 5.44999 5.48222 6.06401 6.20878 6.41776 6.49630 6.56439 6.93672 7.08183 7.26417 8.75096 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.002255 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.741035 B =12415.571291 C =14165.269635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.133 4.133 3 C 0.145 3.855 4 H 0.105 0.895 5 C 0.113 3.887 6 N -0.711 5.711 7 C 0.536 3.464 8 O -0.563 6.563 9 C -0.131 4.131 10 S -0.150 6.150 11 C -0.545 4.545 12 H 0.082 0.918 13 C 0.013 3.987 14 N -0.910 5.910 15 Si 0.996 3.004 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.258 1.258 19 N -0.711 5.711 20 C 0.211 3.789 21 C -0.159 4.159 22 C -0.052 4.052 23 C 0.082 3.918 24 C 0.296 3.704 25 N -0.461 5.461 26 N -0.435 5.435 27 C 0.029 3.971 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.271 0.729 39 H 0.414 0.586 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.617 -9.653 -4.870 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.122 0.878 5 C -0.011 4.011 6 N -0.365 5.365 7 C 0.322 3.678 8 O -0.441 6.441 9 C -0.283 4.283 10 S 0.077 5.923 11 C -0.693 4.693 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.547 5.547 15 Si 0.818 3.182 16 H -0.195 1.195 17 H -0.204 1.204 18 H -0.182 1.182 19 N -0.338 5.338 20 C 0.099 3.901 21 C -0.189 4.189 22 C -0.075 4.075 23 C -0.056 4.056 24 C -0.019 4.019 25 N -0.140 5.140 26 N -0.145 5.145 27 C -0.139 4.139 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.252 0.748 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.187 0.813 41 H 0.181 0.819 42 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -23.275 -10.613 -3.766 25.856 hybrid contribution 0.540 2.055 -1.108 2.397 sum -22.735 -8.557 -4.874 24.776 Atomic orbital electron populations 1.22122 0.95112 1.02289 1.01942 1.21949 0.96465 0.94698 1.04050 1.21381 0.92157 0.95008 0.87525 0.87761 1.21716 0.92865 0.82969 1.03515 1.45672 1.05827 1.10594 1.74427 1.19954 0.82902 0.89573 0.75370 1.90711 1.57128 1.46989 1.49312 1.23379 1.00870 0.97391 1.06625 1.85551 0.99645 1.11730 1.95375 1.23195 0.96065 0.92665 1.57374 0.89982 1.26094 0.94840 1.04253 0.93959 1.70177 1.00011 1.37030 1.47466 0.84991 0.77926 0.76475 0.78834 1.19471 1.20411 1.18185 1.44820 1.13327 1.58861 1.16750 1.19112 0.86585 0.89880 0.94482 1.21275 0.97467 1.02034 0.98128 1.21924 0.92432 0.95301 0.97863 1.16128 0.89313 1.06555 0.93573 1.25414 0.92099 0.92167 0.92249 1.81248 1.12302 1.11502 1.08899 1.67252 1.17394 1.05453 1.24395 1.22912 0.88636 1.02472 0.99836 0.92436 0.91578 0.92820 0.90900 0.89409 0.90041 0.90978 0.74837 0.87200 0.87535 0.92044 0.74786 0.81318 0.81913 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.22 71.98 0.59 -0.42 16 2 C -0.13 -0.70 5.61 30.60 0.17 -0.53 16 3 C 0.14 0.86 2.37 44.99 0.11 0.96 16 4 H 0.10 0.48 6.49 -2.38 -0.02 0.46 16 5 C 0.11 1.45 5.23 86.38 0.45 1.90 16 6 N -0.71 -12.57 5.39 -463.05 -2.50 -15.07 16 7 C 0.54 16.75 7.85 87.66 0.69 17.44 16 8 O -0.56 -23.14 15.86 -3.03 -0.05 -23.19 16 9 C -0.13 -4.68 6.16 71.24 0.44 -4.24 16 10 S -0.15 -7.92 20.57 -56.49 -1.16 -9.09 16 11 C -0.55 -30.03 9.50 67.95 0.65 -29.39 16 12 H 0.08 4.19 7.80 -2.91 -0.02 4.17 16 13 C 0.01 0.74 5.49 84.86 0.47 1.21 16 14 N -0.91 -54.61 13.22 21.65 0.29 -54.32 16 15 Si 1.00 42.47 29.55 68.60 2.03 44.50 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 19 N -0.71 -3.52 4.61 -318.52 -1.47 -4.99 16 20 C 0.21 1.54 5.50 38.52 0.21 1.75 16 21 C -0.16 -1.00 10.03 22.55 0.23 -0.77 16 22 C -0.05 -0.46 9.78 22.59 0.22 -0.24 16 23 C 0.08 1.26 6.59 40.57 0.27 1.52 16 24 C 0.30 5.96 15.53 88.33 1.37 7.33 16 25 N -0.46 -11.46 18.54 19.00 0.35 -11.11 16 26 N -0.44 -7.01 10.27 -188.45 -1.93 -8.95 16 27 C 0.03 0.31 7.89 85.02 0.67 0.98 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.38 6.35 -2.38 -0.02 0.37 16 30 H 0.05 0.44 5.39 -2.39 -0.01 0.43 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.41 5.11 8.14 -92.71 -0.75 4.35 16 36 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 37 H 0.11 3.45 8.14 -2.40 -0.02 3.43 16 38 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 39 H 0.41 1.64 8.62 -92.71 -0.80 0.85 16 40 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 42 H 0.18 1.35 4.01 -2.91 -0.01 1.33 16 Total: -1.00 -79.77 373.32 1.62 -78.15 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -0.46 Total: 6.57 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.53 Total: -2.49 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -5.26 Total: -94.44 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.09 kcal Total: -79.77 1.62 -78.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102987357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.268 kcal (2) G-P(sol) polarization free energy of solvation -79.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds