Wall clock time and date at job start Tue Mar 31 2020 17:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00209 * 2 1 4 4 C 1.52995 * 109.47316 * 124.99860 * 3 2 1 5 5 H 1.08997 * 109.47086 * 55.00145 * 4 3 2 6 6 C 1.53003 * 109.46717 * 175.00136 * 4 3 2 7 7 O 1.42892 * 109.47272 * 54.99999 * 6 4 3 8 8 N 1.46496 * 109.47047 * 294.99635 * 4 3 2 9 9 C 1.34780 * 119.99777 * 154.72319 * 8 4 3 10 10 O 1.21365 * 119.99864 * 0.28011 * 9 8 4 11 11 C 1.49317 * 120.00069 * 180.27622 * 9 8 4 12 12 O 1.21385 * 120.00059 * 0.02562 * 11 9 8 13 13 N 1.34780 * 120.00069 * 179.97438 * 11 9 8 14 14 C 1.39744 * 119.99991 * 175.50063 * 13 11 9 15 15 C 1.38996 * 120.00413 * 214.87200 * 14 13 11 16 16 C 1.37962 * 119.99049 * 179.74367 * 15 14 13 17 17 C 1.38943 * 120.00880 * 0.50362 * 16 15 14 18 18 O 1.35752 * 119.99474 * 179.74760 * 17 16 15 19 19 C 1.34797 * 117.00001 * 185.36869 * 18 17 16 20 20 H 1.08002 * 120.00207 * 354.96030 * 19 18 17 21 21 C 1.38654 * 119.99886 * 174.96368 * 19 18 17 22 22 N 1.31570 * 119.99671 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00320 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47079 * 89.99776 * 23 21 19 25 25 H 1.48497 * 109.46996 * 210.00129 * 23 21 19 26 26 H 1.48496 * 109.46742 * 330.00181 * 23 21 19 27 27 C 1.38931 * 120.00881 * 359.77063 * 17 16 15 28 28 C 1.37972 * 120.01141 * 359.97438 * 27 17 16 29 29 H 1.08002 * 119.99722 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00047 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00047 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46786 * 4.99558 * 3 2 1 33 33 H 1.08999 * 109.46848 * 245.00082 * 3 2 1 34 34 H 1.08999 * 109.46844 * 174.99873 * 6 4 3 35 35 H 1.08995 * 109.47134 * 294.99551 * 6 4 3 36 36 H 0.96706 * 114.00160 * 179.97438 * 7 6 4 37 37 H 0.97002 * 120.00368 * 335.00547 * 8 4 3 38 38 H 0.96998 * 119.99495 * 355.49886 * 13 11 9 39 39 H 1.08006 * 120.00630 * 359.97438 * 15 14 13 40 40 H 1.08004 * 119.99907 * 180.25551 * 16 15 14 41 41 H 0.96997 * 119.99742 * 179.97438 * 22 21 19 42 42 H 1.08008 * 119.99333 * 179.97438 * 27 17 16 43 43 H 1.07999 * 120.00270 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1403 6 6 3.8875 2.6017 1.1109 7 8 3.0342 3.7461 1.0475 8 7 2.2786 1.3225 2.4361 9 6 2.8454 0.8425 3.5607 10 8 3.9843 0.4238 3.5353 11 6 2.0723 0.8260 4.8381 12 8 0.9331 1.2443 4.8635 13 7 2.6390 0.3455 5.9626 14 6 1.9509 0.4161 7.1769 15 6 2.6485 0.6327 8.3595 16 6 1.9684 0.7076 9.5575 17 6 0.5875 0.5561 9.5833 18 8 -0.0808 0.6248 10.7629 19 6 -1.4021 0.3594 10.7340 20 1 -1.8976 0.1863 9.7901 21 6 -2.1250 0.3088 11.9161 22 7 -3.4146 0.0493 11.8878 23 14 -1.2680 0.6076 13.5487 24 1 -1.3129 2.0560 13.8735 25 1 -1.9561 -0.1609 14.6169 26 1 0.1464 0.1653 13.4534 27 6 -0.1093 0.3339 8.4021 28 6 0.5697 0.2642 7.2030 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.5169 2.6664 1.9985 35 1 4.5164 2.5677 0.2213 36 1 3.5079 4.5879 1.0010 37 1 1.3683 1.6571 2.4565 38 1 3.5243 -0.0492 5.9290 39 1 3.7224 0.7461 8.3401 40 1 2.5099 0.8800 10.4760 41 1 -3.9203 0.0135 12.7148 42 1 -1.1827 0.2158 8.4225 43 1 0.0279 0.0910 6.2849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116917732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:19 Heat of formation + Delta-G solvation = -91.121179 kcal Electronic energy + Delta-G solvation = -27581.134064 eV Core-core repulsion = 23400.321835 eV Total energy + Delta-G solvation = -4180.812228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98136 -39.61199 -38.71771 -37.71126 -36.74252 -35.91458 -34.34064 -33.60630 -32.35548 -30.60459 -30.34035 -28.53853 -26.50499 -25.64253 -24.60161 -22.59669 -21.75052 -20.97791 -20.50982 -20.02093 -18.85889 -17.91994 -17.82340 -17.41852 -17.07014 -16.41886 -16.10835 -15.97625 -15.06680 -14.90407 -14.72341 -14.54712 -14.07778 -14.07207 -13.86336 -13.83149 -13.61483 -13.43477 -12.87610 -12.83064 -12.48457 -12.41790 -12.31404 -11.93869 -11.74851 -11.61106 -11.41369 -11.29070 -10.98706 -10.76312 -10.47288 -10.26157 -9.82891 -9.75687 -9.60894 -9.47740 -9.28076 -8.80964 -8.34545 -7.14114 -6.44012 -4.09725 1.22879 1.95447 2.03981 2.09516 2.32528 3.17014 3.22677 3.24587 3.38509 3.56875 3.82983 4.21559 4.24682 4.36838 4.46597 4.52174 4.74672 4.80190 4.89804 4.93167 5.06254 5.08036 5.22470 5.27912 5.51213 5.56678 5.58625 5.68712 5.96488 5.98386 6.03114 6.14617 6.30886 6.42234 6.49617 6.66177 6.77560 6.94783 7.01001 7.18236 7.24064 7.38411 7.53738 7.67146 7.76444 7.97760 8.06540 8.90559 9.51631 10.63324 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.002167 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.079989 B =12920.781088 C =13601.869668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C -0.096 4.096 4 C 0.151 3.849 5 H 0.106 0.894 6 C 0.062 3.938 7 O -0.568 6.568 8 N -0.685 5.685 9 C 0.514 3.486 10 O -0.528 6.528 11 C 0.496 3.504 12 O -0.504 6.504 13 N -0.627 5.627 14 C 0.033 3.967 15 C -0.088 4.088 16 C -0.177 4.177 17 C 0.155 3.845 18 O -0.213 6.213 19 C -0.389 4.389 20 H 0.108 0.892 21 C 0.063 3.937 22 N -0.877 5.877 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.208 4.208 28 C -0.063 4.063 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.381 0.619 37 H 0.416 0.584 38 H 0.414 0.586 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.280 0.720 42 H 0.138 0.862 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 2.759 -23.154 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C -0.134 4.134 4 C 0.046 3.954 5 H 0.124 0.876 6 C -0.017 4.017 7 O -0.373 6.373 8 N -0.339 5.339 9 C 0.294 3.706 10 O -0.404 6.404 11 C 0.277 3.723 12 O -0.379 6.379 13 N -0.272 5.272 14 C -0.060 4.060 15 C -0.108 4.108 16 C -0.197 4.197 17 C 0.102 3.898 18 O -0.118 6.118 19 C -0.465 4.465 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.514 5.514 23 Si 0.732 3.268 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.228 4.228 28 C -0.082 4.082 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.228 0.772 37 H 0.253 0.747 38 H 0.250 0.750 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.156 0.844 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.071 2.332 -22.796 26.890 hybrid contribution 0.592 0.450 0.608 0.961 sum 14.664 2.781 -22.187 26.740 Atomic orbital electron populations 1.23926 0.95921 1.02190 0.99945 1.22908 0.96205 0.98097 1.00919 1.20958 0.98740 0.96518 0.97178 1.21168 0.93692 0.97412 0.83104 0.87647 1.22641 0.92305 0.86111 1.00668 1.86472 1.36871 1.16520 1.97467 1.45707 1.18884 1.61792 1.07470 1.20159 0.86766 0.78454 0.85178 1.90744 1.17723 1.46316 1.85665 1.20032 0.87291 0.79893 0.85042 1.90792 1.17044 1.45114 1.84985 1.42847 1.20895 1.57588 1.05919 1.17301 0.91958 1.12936 0.83771 1.20380 0.98728 1.00896 0.90785 1.19993 0.91458 1.10529 0.97735 1.19178 0.91163 0.93486 0.85933 1.83554 1.23595 1.77246 1.27386 1.20796 0.79416 1.49194 0.97085 0.87482 1.24487 0.94950 0.95622 0.98958 1.69653 1.06134 1.46247 1.29387 0.86166 0.80476 0.78806 0.81377 1.19843 1.20787 1.18303 1.21216 1.01386 1.08813 0.91355 1.20903 0.92254 0.96982 0.98101 0.88356 0.88354 0.87353 0.89651 0.89299 0.92767 0.92385 0.77221 0.74675 0.74954 0.86271 0.85859 0.90976 0.84413 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.32 29.01 0.42 -0.94 16 2 C -0.16 -1.16 9.25 -36.02 -0.33 -1.50 16 3 C -0.10 -0.62 4.92 -27.88 -0.14 -0.75 16 4 C 0.15 1.16 2.36 -67.93 -0.16 1.00 16 5 H 0.11 0.82 7.57 -51.93 -0.39 0.43 16 6 C 0.06 0.42 6.85 37.16 0.25 0.67 16 7 O -0.57 -4.03 12.82 -35.23 -0.45 -4.48 16 8 N -0.69 -6.89 4.73 -54.28 -0.26 -7.15 16 9 C 0.51 6.34 7.85 -11.65 -0.09 6.25 16 10 O -0.53 -7.02 16.14 5.48 0.09 -6.93 16 11 C 0.50 7.25 7.73 -11.65 -0.09 7.16 16 12 O -0.50 -8.64 13.91 5.47 0.08 -8.56 16 13 N -0.63 -8.97 5.32 -10.27 -0.05 -9.03 16 14 C 0.03 0.56 6.30 -83.69 -0.53 0.04 16 15 C -0.09 -1.45 9.96 -39.40 -0.39 -1.84 16 16 C -0.18 -3.40 9.98 -39.42 -0.39 -3.79 16 17 C 0.16 3.54 6.65 -39.06 -0.26 3.28 16 18 O -0.21 -5.55 8.58 0.14 0.00 -5.55 16 19 C -0.39 -10.90 9.94 30.89 0.31 -10.60 16 20 H 0.11 3.07 5.43 -52.49 -0.28 2.79 16 21 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 22 N -0.88 -25.22 13.96 55.48 0.77 -24.45 16 23 Si 0.91 21.46 28.62 -169.99 -4.86 16.59 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.26 -6.12 7.11 56.52 0.40 -5.71 16 27 C -0.21 -4.57 9.16 -39.42 -0.36 -4.93 16 28 C -0.06 -1.22 8.68 -39.40 -0.34 -1.56 16 29 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.10 0.69 7.84 -52.49 -0.41 0.28 16 31 H 0.11 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.08 0.61 7.38 -51.93 -0.38 0.23 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.38 1.23 9.12 45.56 0.42 1.65 16 37 H 0.42 4.29 8.07 -40.82 -0.33 3.96 16 38 H 0.41 4.92 8.30 -40.82 -0.34 4.58 16 39 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.12 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.14 3.18 5.63 -52.48 -0.30 2.89 16 43 H 0.13 2.46 6.22 -52.49 -0.33 2.13 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -32.44 375.37 -5.68 -38.12 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -4.44 Total: 11.61 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.21 Total: -5.84 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.46 Total: -40.62 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.29 Total: -25.52 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.86 Total: 16.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.44 -5.68 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116917732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.001 kcal (2) G-P(sol) polarization free energy of solvation -32.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds