Wall clock time and date at job start Tue Mar 31 2020 17:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00209 * 2 1 4 4 C 1.52995 * 109.47316 * 124.99860 * 3 2 1 5 5 H 1.08997 * 109.47086 * 55.00145 * 4 3 2 6 6 C 1.53003 * 109.46717 * 175.00136 * 4 3 2 7 7 O 1.42892 * 109.47272 * 54.99999 * 6 4 3 8 8 N 1.46496 * 109.47047 * 294.99635 * 4 3 2 9 9 C 1.34780 * 119.99777 * 154.72319 * 8 4 3 10 10 O 1.21365 * 119.99864 * 0.28011 * 9 8 4 11 11 C 1.49317 * 120.00069 * 180.27622 * 9 8 4 12 12 O 1.21385 * 120.00059 * 0.02562 * 11 9 8 13 13 N 1.34780 * 120.00069 * 179.97438 * 11 9 8 14 14 C 1.39744 * 119.99991 * 175.50063 * 13 11 9 15 15 C 1.38996 * 120.00413 * 214.87200 * 14 13 11 16 16 C 1.37962 * 119.99049 * 179.74367 * 15 14 13 17 17 C 1.38943 * 120.00880 * 0.50362 * 16 15 14 18 18 O 1.35752 * 119.99474 * 179.74760 * 17 16 15 19 19 C 1.34797 * 117.00001 * 185.36869 * 18 17 16 20 20 H 1.08002 * 120.00207 * 354.96030 * 19 18 17 21 21 C 1.38654 * 119.99886 * 174.96368 * 19 18 17 22 22 N 1.31570 * 119.99671 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00320 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47079 * 89.99776 * 23 21 19 25 25 H 1.48497 * 109.46996 * 210.00129 * 23 21 19 26 26 H 1.48496 * 109.46742 * 330.00181 * 23 21 19 27 27 C 1.38931 * 120.00881 * 359.77063 * 17 16 15 28 28 C 1.37972 * 120.01141 * 359.97438 * 27 17 16 29 29 H 1.08002 * 119.99722 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.00047 * 0.02562 * 1 2 3 31 31 H 1.08002 * 120.00047 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46786 * 4.99558 * 3 2 1 33 33 H 1.08999 * 109.46848 * 245.00082 * 3 2 1 34 34 H 1.08999 * 109.46844 * 174.99873 * 6 4 3 35 35 H 1.08995 * 109.47134 * 294.99551 * 6 4 3 36 36 H 0.96706 * 114.00160 * 179.97438 * 7 6 4 37 37 H 0.97002 * 120.00368 * 335.00547 * 8 4 3 38 38 H 0.96998 * 119.99495 * 355.49886 * 13 11 9 39 39 H 1.08006 * 120.00630 * 359.97438 * 15 14 13 40 40 H 1.08004 * 119.99907 * 180.25551 * 16 15 14 41 41 H 0.96997 * 119.99742 * 179.97438 * 22 21 19 42 42 H 1.08008 * 119.99333 * 179.97438 * 27 17 16 43 43 H 1.07999 * 120.00270 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1403 6 6 3.8875 2.6017 1.1109 7 8 3.0342 3.7461 1.0475 8 7 2.2786 1.3225 2.4361 9 6 2.8454 0.8425 3.5607 10 8 3.9843 0.4238 3.5353 11 6 2.0723 0.8260 4.8381 12 8 0.9331 1.2443 4.8635 13 7 2.6390 0.3455 5.9626 14 6 1.9509 0.4161 7.1769 15 6 2.6485 0.6327 8.3595 16 6 1.9684 0.7076 9.5575 17 6 0.5875 0.5561 9.5833 18 8 -0.0808 0.6248 10.7629 19 6 -1.4021 0.3594 10.7340 20 1 -1.8976 0.1863 9.7901 21 6 -2.1250 0.3088 11.9161 22 7 -3.4146 0.0493 11.8878 23 14 -1.2680 0.6076 13.5487 24 1 -1.3129 2.0560 13.8735 25 1 -1.9561 -0.1609 14.6169 26 1 0.1464 0.1653 13.4534 27 6 -0.1093 0.3339 8.4021 28 6 0.5697 0.2642 7.2030 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 4.5169 2.6664 1.9985 35 1 4.5164 2.5677 0.2213 36 1 3.5079 4.5879 1.0010 37 1 1.3683 1.6571 2.4565 38 1 3.5243 -0.0492 5.9290 39 1 3.7224 0.7461 8.3401 40 1 2.5099 0.8800 10.4760 41 1 -3.9203 0.0135 12.7148 42 1 -1.1827 0.2158 8.4225 43 1 0.0279 0.0910 6.2849 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116917732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:18 Heat of formation + Delta-G solvation = -116.649130 kcal Electronic energy + Delta-G solvation = -27582.241039 eV Core-core repulsion = 23400.321835 eV Total energy + Delta-G solvation = -4181.919203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13493 -40.96944 -40.08911 -38.47807 -38.29207 -36.52383 -35.62232 -34.50457 -34.34334 -31.95653 -31.27621 -30.06983 -27.40750 -27.02419 -25.95512 -24.10099 -23.03397 -21.96116 -21.45992 -20.84898 -20.20168 -19.51081 -19.07709 -18.57102 -18.22920 -17.44981 -17.17919 -17.00992 -16.49864 -15.90532 -15.79522 -15.66404 -15.56835 -15.44388 -15.31304 -14.82551 -14.69162 -14.48472 -14.24224 -14.11134 -14.00437 -13.49406 -13.40568 -13.34968 -13.02082 -12.79119 -12.73123 -12.48169 -12.10282 -11.99726 -11.85705 -11.53411 -11.18945 -10.98045 -10.78364 -10.66282 -10.40158 -10.17283 -9.90908 -8.77499 -8.49828 -6.22346 0.03279 0.47321 0.65233 1.22970 1.33723 1.38319 1.38528 1.54057 2.05061 2.29095 2.53925 2.73696 2.99921 3.14289 3.31824 3.37618 3.70498 3.96088 4.03426 4.05216 4.20918 4.33531 4.41544 4.46473 4.52922 4.55331 4.59691 4.66913 4.74720 4.96651 5.01957 5.12464 5.14407 5.20517 5.29396 5.37371 5.53334 5.71820 5.74700 5.83361 5.85740 5.91941 6.14030 6.28883 6.67477 6.83606 6.86177 6.88758 7.55234 8.61721 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021062 B = 0.002167 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.079989 B =12920.781088 C =13601.869668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C -0.088 4.088 4 C 0.145 3.855 5 H 0.109 0.891 6 C 0.065 3.935 7 O -0.584 6.584 8 N -0.675 5.675 9 C 0.521 3.479 10 O -0.535 6.535 11 C 0.496 3.504 12 O -0.531 6.531 13 N -0.619 5.619 14 C 0.057 3.943 15 C -0.072 4.072 16 C -0.167 4.167 17 C 0.119 3.881 18 O -0.237 6.237 19 C -0.401 4.401 20 H 0.079 0.921 21 C 0.009 3.991 22 N -0.924 5.924 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.257 1.257 27 C -0.222 4.222 28 C -0.074 4.074 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.397 0.603 37 H 0.415 0.585 38 H 0.431 0.569 39 H 0.171 0.829 40 H 0.147 0.853 41 H 0.285 0.715 42 H 0.110 0.890 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.503 3.337 -24.474 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.182 4.182 3 C -0.126 4.126 4 C 0.042 3.958 5 H 0.127 0.873 6 C -0.014 4.014 7 O -0.393 6.393 8 N -0.327 5.327 9 C 0.301 3.699 10 O -0.413 6.413 11 C 0.279 3.721 12 O -0.408 6.408 13 N -0.267 5.267 14 C -0.036 4.036 15 C -0.092 4.092 16 C -0.186 4.186 17 C 0.069 3.931 18 O -0.144 6.144 19 C -0.477 4.477 20 H 0.096 0.904 21 C -0.190 4.190 22 N -0.564 5.564 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.242 4.242 28 C -0.094 4.094 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.247 0.753 37 H 0.252 0.748 38 H 0.270 0.730 39 H 0.189 0.811 40 H 0.165 0.835 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 17.961 2.920 -24.194 30.273 hybrid contribution -0.408 0.291 0.610 0.789 sum 17.553 3.211 -23.584 29.574 Atomic orbital electron populations 1.24018 0.96329 1.02320 1.00650 1.23052 0.96155 0.98723 1.00287 1.20923 0.98418 0.95708 0.97520 1.21438 0.93927 0.98368 0.82097 0.87327 1.22606 0.91930 0.85466 1.01375 1.86433 1.37797 1.17538 1.97501 1.45811 1.18894 1.60341 1.07687 1.19635 0.86385 0.79101 0.84781 1.90750 1.17753 1.47176 1.85607 1.20552 0.86970 0.78774 0.85826 1.90797 1.18421 1.46048 1.85487 1.42786 1.21361 1.57691 1.04845 1.17438 0.91154 1.09482 0.85503 1.20857 1.01046 0.98265 0.88982 1.20389 0.89742 1.08593 0.99873 1.19710 0.92803 0.95327 0.85247 1.83500 1.22274 1.79860 1.28767 1.20700 0.80771 1.49811 0.96435 0.90380 1.25342 0.95597 0.95502 1.02517 1.69745 1.07582 1.48517 1.30554 0.85166 0.79242 0.79042 0.76970 1.19077 1.19366 1.18115 1.21122 1.00422 1.10013 0.92619 1.20913 0.93703 0.97807 0.96995 0.88366 0.88313 0.86925 0.90353 0.87106 0.94117 0.89573 0.75339 0.74818 0.72968 0.81115 0.83529 0.90523 0.87188 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 14.32 67.78 0.97 -1.79 16 2 C -0.16 -2.07 9.25 25.65 0.24 -1.84 16 3 C -0.09 -0.92 4.92 29.85 0.15 -0.78 16 4 C 0.15 1.87 2.36 44.99 0.11 1.98 16 5 H 0.11 1.39 7.57 -2.39 -0.02 1.37 16 6 C 0.06 0.70 6.85 71.98 0.49 1.19 16 7 O -0.58 -6.88 12.82 -148.98 -1.91 -8.79 16 8 N -0.68 -12.34 4.73 -444.00 -2.10 -14.44 16 9 C 0.52 11.74 7.85 87.23 0.68 12.42 16 10 O -0.54 -12.74 16.14 -3.29 -0.05 -12.79 16 11 C 0.50 13.57 7.73 87.23 0.67 14.24 16 12 O -0.53 -17.78 13.91 -3.36 -0.05 -17.83 16 13 N -0.62 -15.90 5.32 -304.75 -1.62 -17.52 16 14 C 0.06 1.84 6.30 38.24 0.24 2.09 16 15 C -0.07 -2.09 9.96 22.39 0.22 -1.86 16 16 C -0.17 -5.99 9.98 22.37 0.22 -5.76 16 17 C 0.12 5.51 6.65 22.61 0.15 5.66 16 18 O -0.24 -12.72 8.58 -22.43 -0.19 -12.91 16 19 C -0.40 -23.76 9.94 67.92 0.68 -23.08 16 20 H 0.08 4.91 5.43 -2.91 -0.02 4.89 16 21 C 0.01 0.51 5.49 84.83 0.47 0.98 16 22 N -0.92 -55.61 13.96 21.61 0.30 -55.31 16 23 Si 0.97 45.07 28.62 68.60 1.96 47.03 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 C -0.22 -10.22 9.16 22.37 0.20 -10.01 16 28 C -0.07 -2.91 8.68 22.39 0.19 -2.72 16 29 H 0.10 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.10 1.35 7.84 -2.91 -0.02 1.32 16 31 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.08 0.98 7.38 -2.39 -0.02 0.96 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.40 1.63 9.12 -74.05 -0.68 0.95 16 37 H 0.42 8.02 8.07 -92.71 -0.75 7.27 16 38 H 0.43 8.51 8.30 -92.71 -0.77 7.74 16 39 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.29 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.11 5.61 5.63 -2.91 -0.02 5.59 16 43 H 0.13 4.96 6.22 -2.91 -0.02 4.95 16 Total: -1.00 -73.68 375.37 0.93 -72.75 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -1.10 Total: 29.09 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 5.69 Total: -9.28 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.42 Total: -87.26 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -2.20 Total: -52.33 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.96 Total: 47.03 kcal Total: -73.68 0.93 -72.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116917732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.902 kcal (2) G-P(sol) polarization free energy of solvation -73.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds