Wall clock time and date at job start Tue Mar 31 2020 18:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72270 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72118 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72153 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21505 * 119.99563 * 0.02562 * 18 17 2 20 20 C 1.48207 * 120.00041 * 179.97438 * 18 17 2 21 21 N 1.32981 * 120.61158 * 359.72214 * 20 18 17 22 22 C 1.31777 * 120.90072 * 179.75990 * 21 20 18 23 23 N 1.31179 * 122.65025 * 0.53452 * 22 21 20 24 24 C 1.34520 * 121.11118 * 359.73291 * 23 22 21 25 25 C 1.44787 * 130.27906 * 180.02562 * 24 23 22 26 26 C 1.32198 * 114.91667 * 179.97438 * 25 24 23 27 27 S 1.75364 * 111.45069 * 0.02562 * 26 25 24 28 28 C 1.40447 * 120.61552 * 179.97438 * 20 18 17 29 29 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 31 31 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 32 32 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 33 33 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 34 34 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 35 35 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 36 36 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 37 37 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 38 38 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 39 39 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 40 40 H 1.08003 * 118.66969 * 180.24865 * 22 21 20 41 41 H 1.08000 * 122.54299 * 0.02562 * 25 24 23 42 42 H 1.08004 * 124.27836 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.6798 -1.9826 1.2700 15 1 7.8732 0.2544 1.7452 16 1 7.7258 -1.4731 3.4405 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8576 1.1605 2.4118 20 6 2.6404 -0.7171 3.5674 21 7 2.9544 -2.0085 3.5230 22 6 3.3982 -2.6344 4.5944 23 7 3.5454 -2.0369 5.7529 24 6 3.2508 -0.7332 5.9050 25 6 3.3370 0.1158 7.0747 26 6 2.9659 1.3698 6.8814 27 16 2.4652 1.6420 5.2229 28 6 2.7801 -0.0289 4.7838 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.7721 -2.2742 -2.6699 35 1 3.6263 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.6646 -2.0586 0.2387 38 1 4.4079 -2.8955 1.5989 39 1 2.2489 -1.6318 1.1527 40 1 3.6463 -3.6826 4.5166 41 1 3.6794 -0.2477 8.0323 42 1 2.9706 2.1306 7.6479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134539379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:37 Heat of formation + Delta-G solvation = 54.530557 kcal Electronic energy + Delta-G solvation = -27610.426614 eV Core-core repulsion = 23910.975940 eV Total energy + Delta-G solvation = -3699.450673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.73500 -39.22871 -36.97456 -35.88111 -34.40745 -33.09347 -32.32975 -30.56964 -30.24665 -28.25932 -26.44588 -25.11865 -24.60062 -23.46312 -22.02420 -21.05807 -20.39230 -19.87534 -18.08224 -17.72214 -17.34794 -16.54478 -15.88621 -15.21216 -15.15266 -14.90787 -14.40266 -14.14368 -14.06248 -13.90617 -13.64264 -13.38780 -13.13568 -13.00556 -12.59509 -12.21416 -12.07428 -11.96814 -11.77315 -11.64219 -11.14751 -11.05709 -10.78232 -10.51643 -10.46382 -10.41667 -10.34953 -10.15204 -10.03309 -9.85736 -9.17245 -9.08310 -8.96415 -8.90260 -8.55007 -7.76309 -6.97127 -6.04534 -3.01612 0.57149 0.95069 1.59471 2.13036 2.23722 3.23866 3.46264 3.50375 3.54115 3.67135 4.09948 4.24256 4.47278 4.65303 4.72214 4.98614 5.00754 5.21965 5.30093 5.38124 5.53730 5.56349 5.64047 5.69181 5.77595 5.86594 5.90234 5.92938 6.04413 6.09512 6.15318 6.25611 6.32646 6.43851 6.48019 6.64529 6.77759 6.91029 7.00211 7.15239 7.83703 7.92791 8.40751 8.59260 8.79622 9.25896 10.08162 10.23452 11.43219 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.005978 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.797521 B = 4682.967667 C = 6244.026592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.087 0.913 4 C -0.135 4.135 5 C 0.174 3.826 6 H 0.048 0.952 7 C -0.162 4.162 8 N -0.725 5.725 9 C -0.322 4.322 10 H 0.059 0.941 11 C -0.039 4.039 12 N -0.926 5.926 13 Si 1.068 2.932 14 H -0.296 1.296 15 H -0.298 1.298 16 H -0.291 1.291 17 N -0.671 5.671 18 C 0.576 3.424 19 O -0.541 6.541 20 C 0.189 3.811 21 N -0.439 5.439 22 C 0.326 3.674 23 N -0.489 5.489 24 C 0.159 3.841 25 C -0.118 4.118 26 C -0.193 4.193 27 S 0.186 5.814 28 C -0.226 4.226 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.363 0.637 38 H 0.262 0.738 39 H 0.411 0.589 40 H 0.202 0.798 41 H 0.153 0.847 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 4.335 3.605 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.173 4.173 5 C 0.064 3.936 6 H 0.066 0.934 7 C -0.222 4.222 8 N -0.370 5.370 9 C -0.453 4.453 10 H 0.077 0.923 11 C -0.238 4.238 12 N -0.571 5.571 13 Si 0.900 3.100 14 H -0.224 1.224 15 H -0.225 1.225 16 H -0.217 1.217 17 N -0.323 5.323 18 C 0.360 3.640 19 O -0.418 6.418 20 C 0.029 3.971 21 N -0.156 5.156 22 C 0.035 3.965 23 N -0.204 5.204 24 C 0.013 3.987 25 C -0.150 4.150 26 C -0.330 4.330 27 S 0.448 5.552 28 C -0.348 4.348 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.198 0.802 38 H 0.074 0.926 39 H 0.250 0.750 40 H 0.219 0.781 41 H 0.170 0.830 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.754 5.267 3.882 10.929 hybrid contribution -0.330 -0.802 -0.351 0.936 sum -9.085 4.465 3.531 10.721 Atomic orbital electron populations 1.22205 0.95802 1.01867 1.02191 1.20929 0.92811 0.97819 0.84132 0.89531 1.22239 0.97945 1.00634 0.96516 1.20223 0.89436 0.95908 0.88042 0.93367 1.22399 1.01629 1.00230 0.97992 1.42497 1.19047 1.40025 1.35436 1.19969 0.94256 1.16429 1.14670 0.92260 1.25415 1.05068 0.97548 0.95804 1.70770 1.14178 1.29274 1.42869 0.83386 0.75564 0.74688 0.76339 1.22438 1.22521 1.21735 1.45793 1.63683 1.14755 1.08029 1.17561 0.77789 0.85856 0.82771 1.90702 1.51638 1.14823 1.84642 1.20960 0.94330 0.90425 0.91397 1.68445 1.09246 1.07254 1.30628 1.24617 0.89768 1.00531 0.81608 1.68212 1.15850 1.08493 1.27864 1.20320 0.95764 0.90764 0.91836 1.20451 1.04593 0.91966 0.97965 1.25734 1.04300 1.00209 1.02785 1.84681 1.66803 1.03997 0.99756 1.24188 1.09757 1.01396 0.99417 0.92650 0.92276 0.91785 0.90459 0.91710 0.93714 0.94500 0.92816 0.80238 0.92586 0.74988 0.78121 0.82984 0.80790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 37.15 0.35 -1.76 16 2 C 0.15 2.33 2.57 -67.93 -0.17 2.16 16 3 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.13 -1.99 4.43 -26.73 -0.12 -2.11 16 5 C 0.17 3.24 2.89 -67.93 -0.20 3.04 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 C -0.16 -2.80 9.49 37.16 0.35 -2.44 16 8 N -0.73 -16.39 3.84 -53.43 -0.21 -16.59 16 9 C -0.32 -8.53 9.93 -15.06 -0.15 -8.68 16 10 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 11 C -0.04 -1.06 5.50 -17.43 -0.10 -1.16 16 12 N -0.93 -25.20 12.89 55.49 0.72 -24.48 16 13 Si 1.07 26.17 29.92 -169.99 -5.09 21.09 16 14 H -0.30 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 N -0.67 -12.28 3.79 -54.64 -0.21 -12.49 16 18 C 0.58 11.75 7.79 -12.16 -0.09 11.65 16 19 O -0.54 -11.46 14.87 5.36 0.08 -11.38 16 20 C 0.19 3.90 6.81 -82.44 -0.56 3.34 16 21 N -0.44 -8.92 8.30 -11.12 -0.09 -9.02 16 22 C 0.33 6.27 12.22 -92.69 -1.13 5.14 16 23 N -0.49 -9.34 10.49 -11.76 -0.12 -9.46 16 24 C 0.16 2.90 7.23 -83.24 -0.60 2.30 16 25 C -0.12 -1.68 10.38 -38.92 -0.40 -2.09 16 26 C -0.19 -2.40 11.03 28.81 0.32 -2.08 16 27 S 0.19 2.94 21.59 -107.50 -2.32 0.62 16 28 C -0.23 -4.35 6.35 -37.89 -0.24 -4.59 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.36 8.30 4.54 -40.82 -0.19 8.11 16 38 H 0.26 6.93 6.20 -40.82 -0.25 6.68 16 39 H 0.41 7.76 5.89 -40.82 -0.24 7.52 16 40 H 0.20 3.40 8.06 -52.48 -0.42 2.98 16 41 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -30.51 362.55 -9.87 -40.38 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.35 Total: 13.14 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.75 Total: 2.73 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: 0.09 Total: -72.04 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.32 Total: 0.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.51 -9.87 -40.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134539379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.911 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds