Wall clock time and date at job start Tue Mar 31 2020 18:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72270 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72118 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72153 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21505 * 119.99563 * 0.02562 * 18 17 2 20 20 C 1.48207 * 120.00041 * 179.97438 * 18 17 2 21 21 N 1.32981 * 120.61158 * 359.72214 * 20 18 17 22 22 C 1.31777 * 120.90072 * 179.75990 * 21 20 18 23 23 N 1.31179 * 122.65025 * 0.53452 * 22 21 20 24 24 C 1.34520 * 121.11118 * 359.73291 * 23 22 21 25 25 C 1.44787 * 130.27906 * 180.02562 * 24 23 22 26 26 C 1.32198 * 114.91667 * 179.97438 * 25 24 23 27 27 S 1.75364 * 111.45069 * 0.02562 * 26 25 24 28 28 C 1.40447 * 120.61552 * 179.97438 * 20 18 17 29 29 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 31 31 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 32 32 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 33 33 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 34 34 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 35 35 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 36 36 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 37 37 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 38 38 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 39 39 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 40 40 H 1.08003 * 118.66969 * 180.24865 * 22 21 20 41 41 H 1.08000 * 122.54299 * 0.02562 * 25 24 23 42 42 H 1.08004 * 124.27836 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.6798 -1.9826 1.2700 15 1 7.8732 0.2544 1.7452 16 1 7.7258 -1.4731 3.4405 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8576 1.1605 2.4118 20 6 2.6404 -0.7171 3.5674 21 7 2.9544 -2.0085 3.5230 22 6 3.3982 -2.6344 4.5944 23 7 3.5454 -2.0369 5.7529 24 6 3.2508 -0.7332 5.9050 25 6 3.3370 0.1158 7.0747 26 6 2.9659 1.3698 6.8814 27 16 2.4652 1.6420 5.2229 28 6 2.7801 -0.0289 4.7838 29 1 -0.3635 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 3.7721 -2.2742 -2.6699 35 1 3.6263 -0.6888 -3.4657 36 1 5.1507 -1.1479 -2.6701 37 1 3.6646 -2.0586 0.2387 38 1 4.4079 -2.8955 1.5989 39 1 2.2489 -1.6318 1.1527 40 1 3.6463 -3.6826 4.5166 41 1 3.6794 -0.2477 8.0323 42 1 2.9706 2.1306 7.6479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134539379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:36 Heat of formation + Delta-G solvation = 36.584814 kcal Electronic energy + Delta-G solvation = -27611.204799 eV Core-core repulsion = 23910.975940 eV Total energy + Delta-G solvation = -3700.228859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16792 -40.69101 -38.49300 -37.14959 -36.02607 -34.58507 -34.01128 -32.00436 -31.58152 -29.96158 -27.69311 -26.52694 -25.96792 -25.40571 -23.35890 -22.34239 -21.83062 -21.33853 -19.43628 -19.29351 -19.14985 -17.87444 -17.31027 -16.76011 -16.61148 -16.46067 -15.93237 -15.62374 -15.48710 -15.47439 -15.20635 -14.84806 -14.49448 -14.40295 -13.82370 -13.55263 -13.42683 -13.25653 -13.15563 -12.89459 -12.75104 -12.59286 -12.32011 -12.21343 -11.97246 -11.92051 -11.80598 -11.74693 -11.62291 -11.34719 -11.09492 -10.85814 -10.42706 -10.32692 -10.03816 -9.04710 -8.84962 -8.12581 -5.05651 -0.79658 -0.47316 0.32087 0.93233 1.01129 1.49406 1.56784 1.69276 1.74638 2.03796 2.68559 2.77087 2.81062 3.02463 3.35165 3.55964 3.60807 3.72865 3.88905 4.06298 4.10045 4.19050 4.28040 4.47641 4.58005 4.60312 4.76215 4.79053 4.80142 4.82665 4.97449 4.99851 5.03999 5.06001 5.23360 5.29401 5.32682 5.50321 5.56747 5.71609 5.75805 6.41134 6.76526 6.92970 7.08011 7.33020 8.17037 8.29754 9.37287 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.005978 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.797521 B = 4682.967667 C = 6244.026592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.120 4.120 5 C 0.166 3.834 6 H 0.026 0.974 7 C -0.152 4.152 8 N -0.730 5.730 9 C -0.328 4.328 10 H 0.040 0.960 11 C -0.079 4.079 12 N -0.937 5.937 13 Si 1.100 2.900 14 H -0.287 1.287 15 H -0.295 1.295 16 H -0.304 1.304 17 N -0.666 5.666 18 C 0.568 3.432 19 O -0.557 6.557 20 C 0.167 3.833 21 N -0.453 5.453 22 C 0.310 3.690 23 N -0.495 5.495 24 C 0.147 3.853 25 C -0.133 4.133 26 C -0.153 4.153 27 S 0.176 5.824 28 C -0.255 4.255 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.025 0.975 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.408 0.592 40 H 0.215 0.785 41 H 0.184 0.816 42 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 5.208 4.047 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.082 0.918 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.044 0.956 7 C -0.212 4.212 8 N -0.375 5.375 9 C -0.461 4.461 10 H 0.058 0.942 11 C -0.276 4.276 12 N -0.584 5.584 13 Si 0.931 3.069 14 H -0.214 1.214 15 H -0.222 1.222 16 H -0.231 1.231 17 N -0.316 5.316 18 C 0.351 3.649 19 O -0.436 6.436 20 C 0.007 3.993 21 N -0.169 5.169 22 C 0.019 3.981 23 N -0.210 5.210 24 C 0.000 4.000 25 C -0.163 4.163 26 C -0.291 4.291 27 S 0.438 5.562 28 C -0.376 4.376 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.044 0.956 37 H 0.195 0.805 38 H 0.072 0.928 39 H 0.246 0.754 40 H 0.231 0.769 41 H 0.201 0.799 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.879 6.141 4.277 12.393 hybrid contribution -0.044 -0.957 -0.407 1.041 sum -9.923 5.183 3.870 11.845 Atomic orbital electron populations 1.22108 0.93093 1.02868 1.02837 1.21131 0.94838 0.96476 0.83645 0.91771 1.22158 0.94774 1.01554 0.97378 1.20428 0.92077 0.94249 0.87447 0.95555 1.22250 0.99945 1.00738 0.98253 1.42489 1.18043 1.40355 1.36632 1.19945 0.95751 1.15781 1.14594 0.94175 1.26127 1.06914 0.98047 0.96544 1.70798 1.14426 1.29843 1.43285 0.82925 0.74118 0.74725 0.75122 1.21437 1.22185 1.23085 1.45905 1.62913 1.14516 1.08287 1.17742 0.77884 0.85850 0.83407 1.90669 1.52601 1.15298 1.85063 1.21185 0.94956 0.90909 0.92213 1.68406 1.09863 1.07481 1.31139 1.24937 0.90142 1.01242 0.81747 1.68242 1.15883 1.09202 1.27656 1.21093 0.95017 0.90716 0.93176 1.20762 1.05723 0.91923 0.97853 1.26247 1.00855 1.00543 1.01413 1.84678 1.66932 1.02079 1.02545 1.24538 1.10288 1.03369 0.99389 0.91424 0.93866 0.88881 0.86679 0.90642 0.93442 0.91010 0.95553 0.80488 0.92829 0.75375 0.76866 0.79887 0.75664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 2 C 0.14 4.41 2.57 44.99 0.12 4.52 16 3 H 0.06 2.29 7.58 -2.39 -0.02 2.27 16 4 C -0.12 -3.31 4.43 30.59 0.14 -3.17 16 5 C 0.17 6.14 2.89 44.99 0.13 6.27 16 6 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 7 C -0.15 -5.04 9.49 71.98 0.68 -4.36 16 8 N -0.73 -33.57 3.84 -322.95 -1.24 -34.81 16 9 C -0.33 -17.88 9.93 84.03 0.83 -17.04 16 10 H 0.04 2.29 7.83 -2.91 -0.02 2.27 16 11 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 12 N -0.94 -52.13 12.89 21.65 0.28 -51.85 16 13 Si 1.10 54.08 29.92 68.60 2.05 56.13 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 16 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 17 N -0.67 -24.78 3.79 -445.07 -1.69 -26.46 16 18 C 0.57 23.80 7.79 86.89 0.68 24.48 16 19 O -0.56 -24.23 14.87 -3.73 -0.06 -24.28 16 20 C 0.17 7.10 6.81 42.16 0.29 7.39 16 21 N -0.45 -19.01 8.30 -189.09 -1.57 -20.58 16 22 C 0.31 12.28 12.22 181.07 2.21 14.49 16 23 N -0.50 -19.00 10.49 -191.11 -2.00 -21.00 16 24 C 0.15 5.29 7.23 40.96 0.30 5.59 16 25 C -0.13 -3.42 10.38 22.92 0.24 -3.18 16 26 C -0.15 -3.27 11.03 66.80 0.74 -2.53 16 27 S 0.18 5.38 21.59 -56.49 -1.22 4.16 16 28 C -0.25 -9.87 6.35 23.37 0.15 -9.72 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.36 16.79 4.54 -92.71 -0.42 16.37 16 38 H 0.26 14.11 6.20 -92.71 -0.58 13.54 16 39 H 0.41 15.73 5.89 -92.71 -0.55 15.18 16 40 H 0.22 7.49 8.06 -2.91 -0.02 7.47 16 41 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 42 H 0.23 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -69.33 362.55 2.49 -66.84 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.29 Total: 36.03 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 7.65 Total: 15.83 kcal Atomic # 7 Polarization: -148.48 SS G_CDS: -6.22 Total: -154.71 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.06 Total: -24.28 kcal Atomic # 14 Polarization: 54.08 SS G_CDS: 2.05 Total: 56.13 kcal Atomic # 16 Polarization: 5.38 SS G_CDS: -1.22 Total: 4.16 kcal Total: -69.33 2.49 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134539379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.426 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds