Wall clock time and date at job start Tue Mar 31 2020 18:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47114 * 119.99748 * 2 1 3 5 5 C 1.52999 * 109.47483 * 185.00324 * 4 2 1 6 6 H 1.09004 * 109.46629 * 305.00041 * 5 4 2 7 7 C 1.52994 * 109.47319 * 184.99727 * 5 4 2 8 8 N 1.46504 * 109.46978 * 64.99478 * 5 4 2 9 9 C 1.34784 * 119.99831 * 205.00277 * 8 5 4 10 10 O 1.21622 * 119.99719 * 359.97438 * 9 8 5 11 11 C 1.47297 * 119.99890 * 180.02562 * 9 8 5 12 12 C 1.38368 * 120.57452 * 359.97073 * 11 9 8 13 13 C 1.38870 * 121.15413 * 179.77603 * 12 11 9 14 14 C 1.35569 * 122.43553 * 0.52863 * 13 12 11 15 15 C 1.41636 * 120.90091 * 359.47184 * 14 13 12 16 16 N 1.32398 * 131.03853 * 180.29762 * 15 14 13 17 17 S 1.55553 * 109.37710 * 179.97438 * 16 15 14 18 18 N 1.55557 * 100.17226 * 359.97438 * 17 16 15 19 19 C 1.31855 * 109.44901 * 0.02562 * 18 17 16 20 20 N 1.46494 * 109.47488 * 239.99664 * 2 1 3 21 21 C 1.36937 * 120.00225 * 84.99891 * 20 2 1 22 22 H 1.07996 * 119.99835 * 0.02562 * 21 20 2 23 23 C 1.38817 * 120.00178 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99835 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99806 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46959 * 59.99937 * 25 23 21 27 27 H 1.48497 * 109.46638 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.46878 * 299.99817 * 25 23 21 29 29 H 1.09001 * 109.47632 * 300.00183 * 1 2 3 30 30 H 1.09000 * 109.47492 * 60.00682 * 1 2 3 31 31 H 1.09005 * 109.47350 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47179 * 64.99780 * 4 2 1 33 33 H 1.09005 * 109.47149 * 304.99888 * 4 2 1 34 34 H 1.09003 * 109.47342 * 179.97438 * 7 5 4 35 35 H 1.08999 * 109.47104 * 299.99906 * 7 5 4 36 36 H 1.09000 * 109.47044 * 60.00251 * 7 5 4 37 37 H 0.97001 * 120.00265 * 25.00716 * 8 5 4 38 38 H 1.08005 * 119.42382 * 0.05096 * 12 11 9 39 39 H 1.07998 * 118.78077 * 180.28119 * 13 12 11 40 40 H 1.08002 * 119.55247 * 179.75703 * 14 13 12 41 41 H 0.97002 * 119.99845 * 265.00147 * 20 2 1 42 42 H 0.96995 * 119.99953 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3138 6 1 3.9953 -0.9922 0.3869 7 6 4.0850 -1.4381 2.4927 8 7 3.9478 0.7895 1.4925 9 6 5.1611 1.2137 1.0867 10 8 5.9380 0.4318 0.5727 11 6 5.5465 2.6239 1.2668 12 6 4.6720 3.5234 1.8506 13 6 5.0246 4.8545 2.0304 14 6 6.2258 5.3476 1.6406 15 6 7.1932 4.5104 1.0330 16 7 8.4119 4.7721 0.5865 17 16 9.0403 3.4716 0.0092 18 7 7.8752 2.4707 0.2553 19 6 6.8687 3.1009 0.8284 20 7 2.0183 -0.6906 -1.1961 21 6 2.1491 -0.0076 -2.3757 22 1 1.8926 1.0403 -2.4242 23 6 2.6114 -0.6622 -3.5092 24 7 2.9235 -1.9395 -3.4502 25 14 2.7905 0.2698 -5.1182 26 1 3.7465 1.3916 -4.9366 27 1 3.2983 -0.6490 -6.1684 28 1 1.4686 0.8075 -5.5285 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -1.7714 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 5.1714 -1.3615 2.5384 35 1 3.6544 -1.0591 3.4195 36 1 3.8000 -2.4817 2.3597 37 1 3.3283 1.4130 1.9028 38 1 3.6999 3.1834 2.1760 39 1 4.3141 5.5225 2.4944 40 1 6.4498 6.3921 1.7997 41 1 2.2490 -1.6318 -1.1524 42 1 3.2469 -2.3968 -4.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135823868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:14 Heat of formation + Delta-G solvation = 53.624226 kcal Electronic energy + Delta-G solvation = -26433.970053 eV Core-core repulsion = 22734.480079 eV Total energy + Delta-G solvation = -3699.489975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98912 -39.33355 -36.80744 -36.42596 -34.40100 -33.81249 -32.19370 -31.28955 -29.65095 -28.54811 -27.70973 -26.29220 -23.82168 -23.46843 -22.62708 -21.05666 -20.24199 -19.70781 -19.50873 -17.94530 -17.18795 -16.85485 -16.29471 -15.90914 -15.50329 -15.05926 -14.77352 -14.43668 -13.89353 -13.84582 -13.57326 -13.00580 -12.94671 -12.67501 -12.37052 -12.15036 -12.04424 -11.94223 -11.89040 -11.70462 -11.57834 -11.53135 -11.07137 -10.99251 -10.81473 -10.77812 -10.57787 -10.38371 -10.20930 -9.87025 -9.57466 -9.50272 -8.93339 -8.82946 -8.72823 -8.51546 -6.87354 -5.68242 -2.95895 -0.40243 1.18824 1.31736 1.38268 1.64047 2.90550 3.28863 3.48531 3.53301 3.53774 3.72479 4.02658 4.52314 4.57899 4.66358 4.69853 4.86214 5.01764 5.17063 5.43420 5.49980 5.58047 5.58514 5.66752 5.73348 5.88337 5.92380 5.98046 6.02185 6.03057 6.04892 6.16585 6.32045 6.40013 6.47319 6.59896 6.64781 6.75405 6.84533 6.96433 7.10556 7.76199 7.81463 8.50229 8.58465 9.61513 10.18984 10.52879 11.54518 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.004064 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.313577 B = 6887.989986 C = 8131.559901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.145 3.855 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.712 5.712 9 C 0.552 3.448 10 O -0.501 6.501 11 C -0.062 4.062 12 C -0.061 4.061 13 C -0.101 4.101 14 C -0.047 4.047 15 C 0.073 3.927 16 N -0.598 5.598 17 S 0.784 5.216 18 N -0.549 5.549 19 C 0.109 3.891 20 N -0.720 5.720 21 C -0.234 4.234 22 H 0.066 0.934 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.383 0.617 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 13.208 16.604 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.042 3.958 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.364 5.364 9 C 0.338 3.662 10 O -0.375 6.375 11 C -0.072 4.072 12 C -0.085 4.085 13 C -0.125 4.125 14 C -0.071 4.071 15 C -0.087 4.087 16 N -0.448 5.448 17 S 0.831 5.169 18 N -0.397 5.397 19 C -0.054 4.054 20 N -0.362 5.362 21 C -0.366 4.366 22 H 0.084 0.916 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.733 3.267 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.226 0.774 38 H 0.161 0.839 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.217 0.783 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.890 12.347 15.090 21.033 hybrid contribution -1.825 0.795 -0.141 1.995 sum 6.065 13.142 14.949 20.808 Atomic orbital electron populations 1.22460 0.99553 1.00803 0.99730 1.20223 0.91540 0.95548 0.86575 0.93655 1.22173 0.93651 1.02298 0.98807 1.21043 0.95097 0.79727 0.99975 0.87551 1.22182 1.01567 1.00183 0.97968 1.45854 1.15966 1.11808 1.62792 1.17731 0.82579 0.86641 0.79284 1.90886 1.50550 1.55243 1.40868 1.20456 0.90267 0.94673 1.01842 1.21340 0.98658 0.92948 0.95585 1.20557 0.96476 0.95451 1.00045 1.20279 0.91077 0.99077 0.96696 1.21253 0.91235 0.93464 1.02772 1.72222 1.14415 1.35270 1.22908 1.78736 1.19780 0.81931 1.36419 1.72222 1.08347 1.37259 1.21863 1.21990 0.94172 0.89874 0.99345 1.42381 1.77966 1.10555 1.05255 1.19094 1.36523 0.93592 0.87345 0.91613 1.24676 1.02201 0.95913 0.97888 1.69628 1.50887 1.08568 1.28847 0.86356 0.77623 0.78742 0.84017 1.21481 1.21703 1.21397 0.94720 0.92935 0.93548 0.90551 0.92015 0.92531 0.93119 0.91702 0.77384 0.83903 0.83888 0.84132 0.78331 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.49 37.15 0.35 -2.47 16 2 C 0.17 3.19 2.84 -67.94 -0.19 3.00 16 3 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 4 C -0.13 -1.94 4.29 -26.73 -0.11 -2.06 16 5 C 0.15 2.35 2.52 -67.93 -0.17 2.18 16 6 H 0.11 2.30 7.05 -51.93 -0.37 1.94 16 7 C -0.16 -2.22 9.48 37.15 0.35 -1.86 16 8 N -0.71 -10.41 4.40 -54.92 -0.24 -10.65 16 9 C 0.55 9.76 7.73 -12.57 -0.10 9.67 16 10 O -0.50 -11.34 15.75 5.26 0.08 -11.26 16 11 C -0.06 -0.91 6.07 -102.51 -0.62 -1.53 16 12 C -0.06 -0.59 9.49 -39.30 -0.37 -0.96 16 13 C -0.10 -0.78 9.82 -40.30 -0.40 -1.18 16 14 C -0.05 -0.44 10.03 -39.24 -0.39 -0.84 16 15 C 0.07 0.97 7.17 -83.18 -0.60 0.37 16 16 N -0.60 -7.79 11.44 25.61 0.29 -7.50 16 17 S 0.78 9.44 23.60 -107.50 -2.54 6.90 16 18 N -0.55 -9.24 10.68 26.56 0.28 -8.95 16 19 C 0.11 1.72 7.05 -81.06 -0.57 1.15 16 20 N -0.72 -17.72 4.49 -53.43 -0.24 -17.96 16 21 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 25 Si 0.90 23.33 29.55 -169.99 -5.02 18.30 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 4.24 6.64 -40.82 -0.27 3.97 16 38 H 0.14 0.93 6.37 -52.48 -0.33 0.60 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 42 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -37.47 368.51 -9.63 -47.10 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.46 Total: 8.23 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.07 Total: -1.66 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: 0.82 Total: -73.17 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.30 kcal Atomic # 16 Polarization: 9.44 SS G_CDS: -2.54 Total: 6.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.47 -9.63 -47.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135823868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.722 kcal (2) G-P(sol) polarization free energy of solvation -37.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds