Wall clock time and date at job start Tue Mar 31 2020 18:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47350 * 2 1 4 4 C 1.53000 * 109.47114 * 119.99748 * 2 1 3 5 5 C 1.52999 * 109.47483 * 185.00324 * 4 2 1 6 6 H 1.09004 * 109.46629 * 305.00041 * 5 4 2 7 7 C 1.52994 * 109.47319 * 184.99727 * 5 4 2 8 8 N 1.46504 * 109.46978 * 64.99478 * 5 4 2 9 9 C 1.34784 * 119.99831 * 205.00277 * 8 5 4 10 10 O 1.21622 * 119.99719 * 359.97438 * 9 8 5 11 11 C 1.47297 * 119.99890 * 180.02562 * 9 8 5 12 12 C 1.38368 * 120.57452 * 359.97073 * 11 9 8 13 13 C 1.38870 * 121.15413 * 179.77603 * 12 11 9 14 14 C 1.35569 * 122.43553 * 0.52863 * 13 12 11 15 15 C 1.41636 * 120.90091 * 359.47184 * 14 13 12 16 16 N 1.32398 * 131.03853 * 180.29762 * 15 14 13 17 17 S 1.55553 * 109.37710 * 179.97438 * 16 15 14 18 18 N 1.55557 * 100.17226 * 359.97438 * 17 16 15 19 19 C 1.31855 * 109.44901 * 0.02562 * 18 17 16 20 20 N 1.46494 * 109.47488 * 239.99664 * 2 1 3 21 21 C 1.36937 * 120.00225 * 84.99891 * 20 2 1 22 22 H 1.07996 * 119.99835 * 0.02562 * 21 20 2 23 23 C 1.38817 * 120.00178 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99835 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99806 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46959 * 59.99937 * 25 23 21 27 27 H 1.48497 * 109.46638 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.46878 * 299.99817 * 25 23 21 29 29 H 1.09001 * 109.47632 * 300.00183 * 1 2 3 30 30 H 1.09000 * 109.47492 * 60.00682 * 1 2 3 31 31 H 1.09005 * 109.47350 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47179 * 64.99780 * 4 2 1 33 33 H 1.09005 * 109.47149 * 304.99888 * 4 2 1 34 34 H 1.09003 * 109.47342 * 179.97438 * 7 5 4 35 35 H 1.08999 * 109.47104 * 299.99906 * 7 5 4 36 36 H 1.09000 * 109.47044 * 60.00251 * 7 5 4 37 37 H 0.97001 * 120.00265 * 25.00716 * 8 5 4 38 38 H 1.08005 * 119.42382 * 0.05096 * 12 11 9 39 39 H 1.07998 * 118.78077 * 180.28119 * 13 12 11 40 40 H 1.08002 * 119.55247 * 179.75703 * 14 13 12 41 41 H 0.97002 * 119.99845 * 265.00147 * 20 2 1 42 42 H 0.96995 * 119.99953 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3138 6 1 3.9953 -0.9922 0.3869 7 6 4.0850 -1.4381 2.4927 8 7 3.9478 0.7895 1.4925 9 6 5.1611 1.2137 1.0867 10 8 5.9380 0.4318 0.5727 11 6 5.5465 2.6239 1.2668 12 6 4.6720 3.5234 1.8506 13 6 5.0246 4.8545 2.0304 14 6 6.2258 5.3476 1.6406 15 6 7.1932 4.5104 1.0330 16 7 8.4119 4.7721 0.5865 17 16 9.0403 3.4716 0.0092 18 7 7.8752 2.4707 0.2553 19 6 6.8687 3.1009 0.8284 20 7 2.0183 -0.6906 -1.1961 21 6 2.1491 -0.0076 -2.3757 22 1 1.8926 1.0403 -2.4242 23 6 2.6114 -0.6622 -3.5092 24 7 2.9235 -1.9395 -3.4502 25 14 2.7905 0.2698 -5.1182 26 1 3.7465 1.3916 -4.9366 27 1 3.2983 -0.6490 -6.1684 28 1 1.4686 0.8075 -5.5285 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -1.7714 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 5.1714 -1.3615 2.5384 35 1 3.6544 -1.0591 3.4195 36 1 3.8000 -2.4817 2.3597 37 1 3.3283 1.4130 1.9028 38 1 3.6999 3.1834 2.1760 39 1 4.3141 5.5225 2.4944 40 1 6.4498 6.3921 1.7997 41 1 2.2490 -1.6318 -1.1524 42 1 3.2469 -2.3968 -4.2421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135823868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:13 Heat of formation + Delta-G solvation = 25.207066 kcal Electronic energy + Delta-G solvation = -26435.202314 eV Core-core repulsion = 22734.480079 eV Total energy + Delta-G solvation = -3700.722235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95915 -40.59350 -38.25538 -37.33412 -36.01498 -34.82766 -34.01210 -32.56037 -30.79176 -30.30331 -28.59701 -27.55968 -25.67811 -24.78251 -23.52544 -22.27944 -21.44763 -21.16779 -20.52425 -19.30102 -18.80724 -17.92935 -17.42242 -16.92850 -16.82561 -16.43361 -15.88433 -15.81636 -15.55509 -15.44521 -14.96007 -14.48449 -14.24032 -13.75325 -13.59417 -13.33808 -13.19075 -13.11607 -12.91499 -12.84679 -12.83866 -12.76277 -12.66006 -12.58076 -12.26683 -12.20237 -12.05605 -11.83946 -11.78709 -11.53566 -11.38420 -10.91238 -10.80476 -10.01755 -9.82426 -9.44413 -8.93324 -7.92269 -5.16567 -1.30443 0.29490 0.37796 0.40834 0.70268 1.38702 1.42630 1.47311 1.90222 2.16002 2.54911 2.66775 3.06047 3.42439 3.65784 3.76530 3.88633 3.94288 3.99256 4.05056 4.17340 4.25135 4.44321 4.57872 4.68764 4.73830 4.80774 4.83221 4.86716 4.98875 5.08149 5.15147 5.16026 5.24493 5.27166 5.30582 5.38570 5.46286 5.52169 5.67185 5.70054 5.79993 6.31425 6.68010 7.36860 7.39575 8.19422 8.37184 9.31650 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.010014 B = 0.004064 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.313577 B = 6887.989986 C = 8131.559901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.046 0.954 4 C -0.116 4.116 5 C 0.148 3.852 6 H 0.041 0.959 7 C -0.150 4.150 8 N -0.695 5.695 9 C 0.546 3.454 10 O -0.572 6.572 11 C -0.122 4.122 12 C -0.017 4.017 13 C -0.089 4.089 14 C -0.041 4.041 15 C 0.059 3.941 16 N -0.604 5.604 17 S 0.822 5.178 18 N -0.617 5.617 19 C 0.084 3.916 20 N -0.733 5.733 21 C -0.222 4.222 22 H 0.071 0.929 23 C -0.080 4.080 24 N -0.969 5.969 25 Si 0.958 3.042 26 H -0.291 1.291 27 H -0.298 1.298 28 H -0.271 1.271 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.030 0.970 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.413 0.587 38 H 0.182 0.818 39 H 0.200 0.800 40 H 0.173 0.827 41 H 0.369 0.631 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 16.842 19.648 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.064 0.936 4 C -0.155 4.155 5 C 0.043 3.957 6 H 0.059 0.941 7 C -0.208 4.208 8 N -0.349 5.349 9 C 0.334 3.666 10 O -0.452 6.452 11 C -0.132 4.132 12 C -0.042 4.042 13 C -0.113 4.113 14 C -0.066 4.066 15 C -0.101 4.101 16 N -0.455 5.455 17 S 0.870 5.130 18 N -0.466 5.466 19 C -0.078 4.078 20 N -0.373 5.373 21 C -0.355 4.355 22 H 0.089 0.911 23 C -0.272 4.272 24 N -0.621 5.621 25 Si 0.788 3.212 26 H -0.218 1.218 27 H -0.224 1.224 28 H -0.197 1.197 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.252 0.748 38 H 0.199 0.801 39 H 0.217 0.783 40 H 0.190 0.810 41 H 0.200 0.800 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.107 16.048 18.194 24.793 hybrid contribution -1.018 -0.185 -0.949 1.404 sum 4.089 15.864 17.245 23.786 Atomic orbital electron populations 1.22299 0.97492 1.00817 1.00891 1.20570 0.92757 0.95402 0.85860 0.93555 1.22086 0.92214 1.02345 0.98805 1.20824 0.95900 0.80809 0.98132 0.94103 1.22075 1.00030 1.00275 0.98454 1.45654 1.15542 1.11616 1.62049 1.18346 0.82481 0.87772 0.78007 1.90841 1.52655 1.57373 1.44284 1.20370 0.91751 0.93901 1.07164 1.21931 0.98501 0.92972 0.90802 1.21152 0.96580 0.94941 0.98597 1.20870 0.90617 1.00103 0.94983 1.21722 0.91892 0.92983 1.03487 1.72215 1.14709 1.35501 1.23051 1.78323 1.18227 0.80827 1.35599 1.72061 1.10268 1.40042 1.24254 1.22499 0.94601 0.91186 0.99475 1.42626 1.78189 1.10086 1.06376 1.19477 1.33761 0.93767 0.88471 0.91126 1.25413 1.03782 0.96819 1.01169 1.69787 1.53246 1.10073 1.29011 0.85428 0.77936 0.77243 0.80556 1.21813 1.22423 1.19697 0.89974 0.95276 0.94150 0.90680 0.86743 0.95066 0.89344 0.91292 0.74818 0.80128 0.78327 0.80966 0.79975 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 9.49 71.98 0.68 -4.14 16 2 C 0.16 5.74 2.84 44.99 0.13 5.87 16 3 H 0.05 1.64 7.56 -2.38 -0.02 1.62 16 4 C -0.12 -3.15 4.29 30.59 0.13 -3.02 16 5 C 0.15 4.78 2.52 44.99 0.11 4.90 16 6 H 0.04 1.89 7.05 -2.38 -0.02 1.88 16 7 C -0.15 -4.05 9.48 71.98 0.68 -3.36 16 8 N -0.70 -19.63 4.40 -445.91 -1.96 -21.59 16 9 C 0.55 20.01 7.73 86.62 0.67 20.68 16 10 O -0.57 -28.27 15.75 -4.10 -0.06 -28.33 16 11 C -0.12 -3.52 6.07 -18.49 -0.11 -3.63 16 12 C -0.02 -0.27 9.49 22.45 0.21 -0.05 16 13 C -0.09 -0.87 9.82 21.80 0.21 -0.65 16 14 C -0.04 -0.62 10.03 22.49 0.23 -0.40 16 15 C 0.06 1.50 7.17 41.93 0.30 1.80 16 16 N -0.60 -15.53 11.44 -72.89 -0.83 -16.36 16 17 S 0.82 20.92 23.60 -56.49 -1.33 19.59 16 18 N -0.62 -22.38 10.68 -69.88 -0.75 -23.13 16 19 C 0.08 2.74 7.05 43.54 0.31 3.05 16 20 N -0.73 -36.71 4.49 -322.96 -1.45 -38.16 16 21 C -0.22 -12.68 9.93 84.03 0.83 -11.84 16 22 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 23 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 24 N -0.97 -62.75 13.06 21.65 0.28 -62.47 16 25 Si 0.96 49.30 29.55 68.60 2.03 51.32 16 26 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 27 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 28 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 1.29 8.14 -2.38 -0.02 1.28 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 7.41 6.64 -92.71 -0.62 6.80 16 38 H 0.18 1.24 6.37 -2.91 -0.02 1.22 16 39 H 0.20 -0.12 8.06 -2.91 -0.02 -0.15 16 40 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 42 H 0.25 15.66 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -92.49 368.51 0.51 -91.98 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.27 Total: 22.33 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.86 Total: 4.81 kcal Atomic # 7 Polarization: -157.00 SS G_CDS: -4.71 Total: -161.71 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal Atomic # 14 Polarization: 49.30 SS G_CDS: 2.03 Total: 51.32 kcal Atomic # 16 Polarization: 20.92 SS G_CDS: -1.33 Total: 19.59 kcal Total: -92.49 0.51 -91.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135823868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.188 kcal (2) G-P(sol) polarization free energy of solvation -92.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds