Wall clock time and date at job start Tue Mar 31 2020 18:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34840 * 117.00119 * 2 1 4 4 O 1.21575 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.47003 * 120.00163 * 180.02562 * 3 2 1 6 6 C 1.39572 * 120.48931 * 355.93570 * 5 3 2 7 7 C 1.37799 * 120.14365 * 179.97438 * 6 5 3 8 8 C 1.39411 * 121.19839 * 0.02562 * 7 6 5 9 9 N 1.39151 * 119.50077 * 179.97438 * 8 7 6 10 10 C 1.46495 * 119.99911 * 0.27463 * 9 8 7 11 11 H 1.08993 * 110.43971 * 34.02118 * 10 9 8 12 12 C 1.51282 * 110.48480 * 271.48036 * 10 9 8 13 13 O 1.21283 * 124.94024 * 45.03645 * 12 10 9 14 14 N 1.34426 * 110.11885 * 225.06964 * 12 10 9 15 15 O 1.41600 * 124.35052 * 179.56979 * 14 12 10 16 16 C 1.46764 * 111.29443 * 359.59254 * 14 12 10 17 17 C 1.54635 * 110.48608 * 156.56788 * 10 9 8 18 18 H 1.09007 * 110.96385 * 261.58930 * 17 10 9 19 19 C 1.53000 * 110.96993 * 25.35486 * 17 10 9 20 20 C 1.38434 * 121.00037 * 0.27058 * 8 7 6 21 21 C 1.40507 * 119.76895 * 359.46248 * 20 8 7 22 22 C 1.40935 * 120.57118 * 180.28872 * 21 20 8 23 23 H 1.08005 * 119.99943 * 213.19030 * 22 21 20 24 24 C 1.40249 * 120.00055 * 33.18493 * 22 21 20 25 25 N 1.30633 * 119.99854 * 9.36318 * 24 22 21 26 26 Si 1.86806 * 119.99925 * 189.36300 * 24 22 21 27 27 H 1.48498 * 109.47168 * 60.00071 * 26 24 22 28 28 H 1.48505 * 109.46932 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46881 * 299.99791 * 26 24 22 30 30 H 1.08995 * 109.46881 * 59.99827 * 1 2 3 31 31 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46432 * 299.99883 * 1 2 3 33 33 H 1.08001 * 119.92504 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.39973 * 180.02562 * 7 6 5 35 35 H 0.96998 * 120.00101 * 179.97438 * 9 8 7 36 36 H 0.96698 * 113.99985 * 359.97438 * 15 14 12 37 37 H 1.09009 * 110.23988 * 136.01906 * 16 14 12 38 38 H 1.08998 * 110.24671 * 257.92174 * 16 14 12 39 39 H 1.08997 * 109.46906 * 60.00365 * 19 17 10 40 40 H 1.09003 * 109.46874 * 180.02562 * 19 17 10 41 41 H 1.09000 * 109.46835 * 300.00157 * 19 17 10 42 42 H 1.08005 * 120.12219 * 179.73066 * 20 8 7 43 43 H 0.97008 * 119.99922 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2211 0.0005 5 6 3.5322 1.2784 -0.0006 6 6 4.3023 0.1174 0.0841 7 6 5.6779 0.1977 0.0825 8 6 6.3293 1.4274 -0.0024 9 7 7.7203 1.4675 -0.0006 10 6 8.4888 0.2232 0.0839 11 1 7.9697 -0.5810 -0.4374 12 6 8.7309 -0.1525 1.5292 13 8 7.8920 -0.1225 2.4046 14 7 10.0113 -0.5236 1.7023 15 8 10.5658 -0.9267 2.9413 16 6 10.7606 -0.4566 0.4421 17 6 9.9060 0.4216 -0.5020 18 1 9.9579 0.0590 -1.5286 19 6 10.3323 1.8887 -0.4193 20 6 5.6134 2.6095 -0.0822 21 6 4.2088 2.5753 -0.0896 22 6 3.4632 3.7681 -0.1765 23 1 2.5097 3.8467 0.3248 24 6 3.9593 4.8531 -0.9138 25 7 5.0158 4.7023 -1.6671 26 14 3.1093 6.5138 -0.8185 27 1 3.1237 6.9975 0.5854 28 1 3.8234 7.4858 -1.6849 29 1 1.7046 6.3781 -1.2810 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 3.8188 -0.8461 0.1511 34 1 6.2620 -0.7083 0.1481 35 1 8.1810 2.3190 -0.0597 36 1 9.9372 -0.9148 3.6760 37 1 11.7352 0.0030 0.6069 38 1 10.8813 -1.4549 0.0215 39 1 10.3369 2.2075 0.6230 40 1 11.3323 2.0007 -0.8383 41 1 9.6311 2.5031 -0.9841 42 1 6.1327 3.5546 -0.1431 43 1 5.3588 5.4527 -2.1774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171368498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:17 Heat of formation + Delta-G solvation = -74.980442 kcal Electronic energy + Delta-G solvation = -29065.861052 eV Core-core repulsion = 24885.748738 eV Total energy + Delta-G solvation = -4180.112314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.71336 -39.08991 -37.63851 -36.78995 -36.15514 -35.17116 -34.13061 -33.19841 -31.13064 -29.72241 -28.92505 -27.39475 -26.42106 -25.96731 -25.32692 -22.05865 -21.46444 -20.89837 -20.35787 -19.31729 -17.88234 -17.44194 -16.95364 -16.60986 -16.19086 -15.84406 -15.57617 -15.23622 -14.89859 -14.63787 -14.21989 -14.17159 -13.93289 -13.69480 -13.40225 -13.05563 -12.95688 -12.66851 -12.48445 -12.39856 -12.22553 -11.73400 -11.64292 -11.55410 -11.41684 -11.35306 -11.16919 -11.10979 -10.90441 -10.69395 -10.30711 -10.10638 -9.85466 -9.60073 -9.34647 -8.91161 -8.73278 -8.69651 -7.38839 -6.88785 -6.43324 -4.46656 1.68982 2.35542 2.52744 2.87923 3.06437 3.13139 3.28559 3.84267 3.89553 3.93918 4.01264 4.16965 4.30135 4.45794 4.63077 4.69274 4.99738 5.19407 5.23333 5.33900 5.48289 5.57326 5.62932 5.67492 5.76015 5.77507 5.92109 6.00022 6.12006 6.34221 6.45346 6.50109 6.77037 6.97608 7.13904 7.17741 7.19177 7.45722 7.46723 7.68887 7.83161 8.01328 8.18872 8.33641 8.38545 8.66579 8.80020 8.90238 9.23250 10.09238 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.003844 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.235351 B = 7281.539099 C = 9097.607537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.506 3.494 4 O -0.526 6.526 5 C -0.285 4.285 6 C 0.002 3.998 7 C -0.289 4.289 8 C 0.240 3.760 9 N -0.730 5.730 10 C 0.143 3.857 11 H 0.123 0.877 12 C 0.480 3.520 13 O -0.504 6.504 14 N -0.487 5.487 15 O -0.329 6.329 16 C 0.135 3.865 17 C -0.107 4.107 18 H 0.114 0.886 19 C -0.154 4.154 20 C -0.228 4.228 21 C 0.183 3.817 22 C -0.419 4.419 23 H 0.109 0.891 24 C 0.072 3.928 25 N -0.783 5.783 26 Si 0.917 3.083 27 H -0.262 1.262 28 H -0.279 1.279 29 H -0.262 1.262 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.400 0.600 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.120 0.880 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.050 -7.057 -0.533 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.294 6.294 3 C 0.357 3.643 4 O -0.418 6.418 5 C -0.288 4.288 6 C -0.017 4.017 7 C -0.310 4.310 8 C 0.141 3.859 9 N -0.366 5.366 10 C 0.031 3.969 11 H 0.140 0.860 12 C 0.266 3.734 13 O -0.376 6.376 14 N -0.269 5.269 15 O -0.220 6.220 16 C 0.014 3.986 17 C -0.126 4.126 18 H 0.132 0.868 19 C -0.211 4.211 20 C -0.252 4.252 21 C 0.179 3.821 22 C -0.446 4.446 23 H 0.126 0.874 24 C -0.148 4.148 25 N -0.408 5.408 26 Si 0.741 3.259 27 H -0.187 1.187 28 H -0.204 1.204 29 H -0.186 1.186 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.238 0.762 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.138 0.862 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.110 -6.885 -0.502 13.081 hybrid contribution -0.566 0.885 0.616 1.218 sum 10.544 -6.001 0.114 12.133 Atomic orbital electron populations 1.22941 0.78923 1.01838 1.01638 1.86595 1.21280 1.35286 1.86288 1.21278 0.89572 0.80062 0.73350 1.90702 1.66973 1.35218 1.48880 1.19656 0.86651 0.94279 1.28223 1.20579 0.92907 0.96058 0.92172 1.19724 0.93922 0.94491 1.22906 1.17672 0.81178 0.94477 0.92594 1.44356 1.03628 1.05380 1.83188 1.21199 0.92711 0.92003 0.90956 0.85973 1.22624 0.80609 0.76953 0.93260 1.90798 1.46937 1.52288 1.47563 1.49842 1.09796 1.67506 0.99752 1.88904 1.32507 1.90124 1.10480 1.22183 0.96073 1.00758 0.79609 1.22576 0.92903 0.97134 1.00031 0.86793 1.21824 1.02156 0.94275 1.02869 1.20573 0.93418 0.94864 1.16295 1.18090 0.90563 0.89774 0.83723 1.20259 1.05418 0.94824 1.24143 0.87356 1.26142 0.94143 1.00963 0.93519 1.69745 1.19273 1.32995 1.18761 0.86213 0.80491 0.79818 0.79404 1.18652 1.20397 1.18592 0.92868 0.89605 0.92934 0.87906 0.89119 0.76211 0.75619 0.89511 0.90174 0.92141 0.91246 0.90505 0.86216 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.57 101.05 1.07 1.75 16 2 O -0.38 -8.01 9.84 -40.87 -0.40 -8.41 16 3 C 0.51 12.64 7.86 34.28 0.27 12.91 16 4 O -0.53 -14.14 13.47 -19.32 -0.26 -14.40 16 5 C -0.28 -7.30 6.07 -102.50 -0.62 -7.92 16 6 C 0.00 0.05 9.60 -39.24 -0.38 -0.33 16 7 C -0.29 -6.27 9.15 -39.31 -0.36 -6.63 16 8 C 0.24 5.21 6.63 -84.03 -0.56 4.66 16 9 N -0.73 -12.32 5.11 -52.31 -0.27 -12.59 16 10 C 0.14 1.93 2.74 -67.94 -0.19 1.75 16 11 H 0.12 1.62 6.44 -51.93 -0.33 1.29 16 12 C 0.48 7.45 7.85 -10.86 -0.09 7.37 16 13 O -0.50 -10.05 17.57 -2.38 -0.04 -10.10 16 14 N -0.49 -6.08 4.30 -59.09 -0.25 -6.34 16 15 O -0.33 -3.95 15.21 -19.40 -0.30 -4.24 16 16 C 0.13 1.14 7.22 -3.01 -0.02 1.12 16 17 C -0.11 -0.94 3.73 -88.87 -0.33 -1.27 16 18 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.15 -1.33 8.09 37.16 0.30 -1.03 16 20 C -0.23 -5.62 8.46 -38.65 -0.33 -5.95 16 21 C 0.18 4.93 5.66 -104.67 -0.59 4.34 16 22 C -0.42 -11.44 7.96 -37.81 -0.30 -11.74 16 23 H 0.11 3.08 5.76 -52.48 -0.30 2.78 16 24 C 0.07 1.80 5.26 -17.31 -0.09 1.71 16 25 N -0.78 -19.40 11.10 55.56 0.62 -18.78 16 26 Si 0.92 19.20 29.57 -169.99 -5.03 14.18 16 27 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 28 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 29 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 2.14 7.62 -52.49 -0.40 1.74 16 34 H 0.09 1.77 6.12 -52.48 -0.32 1.45 16 35 H 0.40 6.24 5.91 -40.82 -0.24 6.00 16 36 H 0.40 3.98 8.69 45.56 0.40 4.37 16 37 H 0.09 0.62 7.91 -51.92 -0.41 0.21 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.74 6.64 -51.93 -0.34 0.40 16 42 H 0.12 2.99 6.55 -52.48 -0.34 2.64 16 43 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -33.78 361.24 -7.10 -40.87 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -4.39 Total: 13.64 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.21 Total: 0.73 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.10 Total: -37.71 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.00 Total: -37.15 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.78 -7.10 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171368498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.108 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds