Wall clock time and date at job start Tue Mar 31 2020 18:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34840 * 117.00119 * 2 1 4 4 O 1.21575 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.47003 * 120.00163 * 180.02562 * 3 2 1 6 6 C 1.39572 * 120.48931 * 355.93570 * 5 3 2 7 7 C 1.37799 * 120.14365 * 179.97438 * 6 5 3 8 8 C 1.39411 * 121.19839 * 0.02562 * 7 6 5 9 9 N 1.39151 * 119.50077 * 179.97438 * 8 7 6 10 10 C 1.46495 * 119.99911 * 0.27463 * 9 8 7 11 11 H 1.08993 * 110.43971 * 34.02118 * 10 9 8 12 12 C 1.51282 * 110.48480 * 271.48036 * 10 9 8 13 13 O 1.21283 * 124.94024 * 45.03645 * 12 10 9 14 14 N 1.34426 * 110.11885 * 225.06964 * 12 10 9 15 15 O 1.41600 * 124.35052 * 179.56979 * 14 12 10 16 16 C 1.46764 * 111.29443 * 359.59254 * 14 12 10 17 17 C 1.54635 * 110.48608 * 156.56788 * 10 9 8 18 18 H 1.09007 * 110.96385 * 261.58930 * 17 10 9 19 19 C 1.53000 * 110.96993 * 25.35486 * 17 10 9 20 20 C 1.38434 * 121.00037 * 0.27058 * 8 7 6 21 21 C 1.40507 * 119.76895 * 359.46248 * 20 8 7 22 22 C 1.40935 * 120.57118 * 180.28872 * 21 20 8 23 23 H 1.08005 * 119.99943 * 213.19030 * 22 21 20 24 24 C 1.40249 * 120.00055 * 33.18493 * 22 21 20 25 25 N 1.30633 * 119.99854 * 9.36318 * 24 22 21 26 26 Si 1.86806 * 119.99925 * 189.36300 * 24 22 21 27 27 H 1.48498 * 109.47168 * 60.00071 * 26 24 22 28 28 H 1.48505 * 109.46932 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46881 * 299.99791 * 26 24 22 30 30 H 1.08995 * 109.46881 * 59.99827 * 1 2 3 31 31 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46432 * 299.99883 * 1 2 3 33 33 H 1.08001 * 119.92504 * 359.97438 * 6 5 3 34 34 H 1.08003 * 119.39973 * 180.02562 * 7 6 5 35 35 H 0.96998 * 120.00101 * 179.97438 * 9 8 7 36 36 H 0.96698 * 113.99985 * 359.97438 * 15 14 12 37 37 H 1.09009 * 110.23988 * 136.01906 * 16 14 12 38 38 H 1.08998 * 110.24671 * 257.92174 * 16 14 12 39 39 H 1.08997 * 109.46906 * 60.00365 * 19 17 10 40 40 H 1.09003 * 109.46874 * 180.02562 * 19 17 10 41 41 H 1.09000 * 109.46835 * 300.00157 * 19 17 10 42 42 H 1.08005 * 120.12219 * 179.73066 * 20 8 7 43 43 H 0.97008 * 119.99922 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4021 2.2211 0.0005 5 6 3.5322 1.2784 -0.0006 6 6 4.3023 0.1174 0.0841 7 6 5.6779 0.1977 0.0825 8 6 6.3293 1.4274 -0.0024 9 7 7.7203 1.4675 -0.0006 10 6 8.4888 0.2232 0.0839 11 1 7.9697 -0.5810 -0.4374 12 6 8.7309 -0.1525 1.5292 13 8 7.8920 -0.1225 2.4046 14 7 10.0113 -0.5236 1.7023 15 8 10.5658 -0.9267 2.9413 16 6 10.7606 -0.4566 0.4421 17 6 9.9060 0.4216 -0.5020 18 1 9.9579 0.0590 -1.5286 19 6 10.3323 1.8887 -0.4193 20 6 5.6134 2.6095 -0.0822 21 6 4.2088 2.5753 -0.0896 22 6 3.4632 3.7681 -0.1765 23 1 2.5097 3.8467 0.3248 24 6 3.9593 4.8531 -0.9138 25 7 5.0158 4.7023 -1.6671 26 14 3.1093 6.5138 -0.8185 27 1 3.1237 6.9975 0.5854 28 1 3.8234 7.4858 -1.6849 29 1 1.7046 6.3781 -1.2810 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 3.8188 -0.8461 0.1511 34 1 6.2620 -0.7083 0.1481 35 1 8.1810 2.3190 -0.0597 36 1 9.9372 -0.9148 3.6760 37 1 11.7352 0.0030 0.6069 38 1 10.8813 -1.4549 0.0215 39 1 10.3369 2.2075 0.6230 40 1 11.3323 2.0007 -0.8383 41 1 9.6311 2.5031 -0.9841 42 1 6.1327 3.5546 -0.1431 43 1 5.3588 5.4527 -2.1774 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171368498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:16 Heat of formation + Delta-G solvation = -99.044816 kcal Electronic energy + Delta-G solvation = -29066.904562 eV Core-core repulsion = 24885.748738 eV Total energy + Delta-G solvation = -4181.155823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80725 -40.90072 -39.26062 -37.97035 -37.37497 -36.87841 -35.80138 -34.78536 -32.13801 -31.56442 -30.41318 -28.82247 -27.49881 -27.13747 -27.03686 -23.78337 -23.07367 -21.88710 -21.65682 -20.97496 -19.28205 -18.90429 -18.39193 -18.11890 -17.46904 -17.39107 -17.18952 -16.93134 -16.55267 -15.73106 -15.35717 -15.25248 -15.21219 -14.86704 -14.79398 -14.57637 -14.34749 -14.15229 -14.06950 -13.61014 -13.53611 -13.33331 -13.14122 -12.94121 -12.83898 -12.69783 -12.57996 -12.37503 -12.22586 -12.09415 -11.87612 -11.58807 -11.52061 -11.39124 -11.12237 -10.67044 -10.41363 -9.71468 -9.28215 -8.72736 -8.10614 -6.43140 0.46628 0.79271 1.08627 1.33766 1.35577 1.46294 1.55867 2.16319 2.21443 2.23562 2.62379 2.78448 3.26917 3.31930 3.53699 3.73453 3.85748 4.20066 4.31986 4.37266 4.40609 4.45500 4.52189 4.53473 4.66834 4.68515 4.76329 4.80163 4.92023 5.02370 5.10816 5.13608 5.27301 5.32484 5.42714 5.52929 5.65566 5.74444 5.88067 6.02987 6.09451 6.18868 6.50760 6.79150 6.81913 6.86249 7.05128 7.10394 7.36407 8.26706 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.003844 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.235351 B = 7281.539099 C = 9097.607537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.503 3.497 4 O -0.557 6.557 5 C -0.320 4.320 6 C 0.002 3.998 7 C -0.286 4.286 8 C 0.255 3.745 9 N -0.721 5.721 10 C 0.133 3.867 11 H 0.130 0.870 12 C 0.472 3.528 13 O -0.561 6.561 14 N -0.481 5.481 15 O -0.330 6.330 16 C 0.128 3.872 17 C -0.089 4.089 18 H 0.151 0.849 19 C -0.155 4.155 20 C -0.254 4.254 21 C 0.157 3.843 22 C -0.459 4.459 23 H 0.085 0.915 24 C 0.038 3.962 25 N -0.801 5.801 26 Si 0.979 3.021 27 H -0.261 1.261 28 H -0.254 1.254 29 H -0.272 1.272 30 H 0.051 0.949 31 H 0.134 0.866 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.405 0.595 36 H 0.404 0.596 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.042 0.958 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.549 -8.426 -1.632 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.356 3.644 4 O -0.452 6.452 5 C -0.324 4.324 6 C -0.017 4.017 7 C -0.307 4.307 8 C 0.153 3.847 9 N -0.355 5.355 10 C 0.022 3.978 11 H 0.147 0.853 12 C 0.258 3.742 13 O -0.438 6.438 14 N -0.260 5.260 15 O -0.224 6.224 16 C 0.010 3.990 17 C -0.109 4.109 18 H 0.168 0.832 19 C -0.212 4.212 20 C -0.278 4.278 21 C 0.152 3.848 22 C -0.487 4.487 23 H 0.102 0.898 24 C -0.179 4.179 25 N -0.426 5.426 26 Si 0.799 3.201 27 H -0.185 1.185 28 H -0.177 1.177 29 H -0.197 1.197 30 H 0.070 0.930 31 H 0.152 0.848 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.244 0.756 36 H 0.252 0.748 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.713 -8.299 -1.626 16.110 hybrid contribution -1.196 1.098 0.999 1.906 sum 12.516 -7.201 -0.627 14.454 Atomic orbital electron populations 1.23355 0.76103 1.04954 1.01603 1.86543 1.24007 1.33156 1.85668 1.21308 0.89673 0.80605 0.72824 1.90672 1.67617 1.36431 1.50449 1.19956 0.87627 0.94910 1.29867 1.20838 0.93460 0.96119 0.91303 1.20040 0.93796 0.95423 1.21470 1.17720 0.83432 0.93570 0.90025 1.44420 1.02035 1.07392 1.81632 1.21550 0.95264 0.90453 0.90486 0.85278 1.22865 0.81149 0.76753 0.93445 1.90770 1.48877 1.54999 1.49199 1.50001 1.09429 1.65663 1.00885 1.88890 1.32787 1.89977 1.10717 1.22623 0.96276 1.02632 0.77502 1.22676 0.89023 0.97456 1.01707 0.83164 1.21852 1.03649 0.93973 1.01776 1.20472 0.92981 0.95577 1.18769 1.18471 0.91808 0.90395 0.84087 1.20243 1.05291 0.96748 1.26434 0.89758 1.26785 0.94896 1.03546 0.92715 1.69746 1.19828 1.34246 1.18733 0.85317 0.78894 0.76159 0.79689 1.18519 1.17745 1.19736 0.93044 0.84834 0.92961 0.85787 0.86512 0.75556 0.74761 0.87324 0.87141 0.93914 0.88116 0.91758 0.87304 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 10.57 113.37 1.20 2.27 16 2 O -0.38 -16.08 9.84 -57.53 -0.57 -16.65 16 3 C 0.50 26.13 7.86 70.12 0.55 26.68 16 4 O -0.56 -31.58 13.47 19.59 0.26 -31.31 16 5 C -0.32 -17.06 6.07 -18.49 -0.11 -17.17 16 6 C 0.00 0.08 9.60 22.49 0.22 0.30 16 7 C -0.29 -12.26 9.15 22.45 0.21 -12.06 16 8 C 0.26 11.15 6.63 38.31 0.25 11.40 16 9 N -0.72 -23.73 5.11 -319.42 -1.63 -25.36 16 10 C 0.13 3.28 2.74 44.99 0.12 3.41 16 11 H 0.13 3.04 6.44 -2.39 -0.02 3.02 16 12 C 0.47 13.94 7.85 87.90 0.69 14.63 16 13 O -0.56 -22.42 17.57 4.55 0.08 -22.34 16 14 N -0.48 -10.72 4.30 -459.43 -1.97 -12.70 16 15 O -0.33 -7.24 15.21 -31.20 -0.47 -7.72 16 16 C 0.13 1.59 7.22 86.90 0.63 2.22 16 17 C -0.09 -1.20 3.73 -9.66 -0.04 -1.24 16 18 H 0.15 1.06 8.14 -2.38 -0.02 1.04 16 19 C -0.16 -2.21 8.09 71.98 0.58 -1.62 16 20 C -0.25 -13.03 8.46 22.87 0.19 -12.84 16 21 C 0.16 8.88 5.66 -19.90 -0.11 8.77 16 22 C -0.46 -26.61 7.96 23.42 0.19 -26.42 16 23 H 0.08 5.16 5.76 -2.91 -0.02 5.14 16 24 C 0.04 1.98 5.26 85.36 0.45 2.43 16 25 N -0.80 -40.70 11.10 21.88 0.24 -40.46 16 26 Si 0.98 40.53 29.57 68.60 2.03 42.56 16 27 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 28 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.12 5.07 7.62 -2.91 -0.02 5.04 16 34 H 0.12 4.35 6.12 -2.91 -0.02 4.34 16 35 H 0.41 12.46 5.91 -92.71 -0.55 11.91 16 36 H 0.40 7.71 8.69 -74.06 -0.64 7.06 16 37 H 0.11 0.98 7.91 -2.38 -0.02 0.96 16 38 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 1.11 6.64 -2.39 -0.02 1.09 16 42 H 0.11 5.69 6.55 -2.91 -0.02 5.67 16 43 H 0.29 13.24 8.29 -92.70 -0.77 12.47 16 Total: -1.00 -79.23 361.24 2.88 -76.34 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -0.10 Total: 36.88 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 5.02 Total: 0.75 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -3.36 Total: -78.52 kcal Atomic # 8 Polarization: -77.32 SS G_CDS: -0.70 Total: -78.02 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -79.23 2.88 -76.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171368498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.703 kcal (2) G-P(sol) polarization free energy of solvation -79.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds