Wall clock time and date at job start Tue Mar 31 2020 17:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47255 * 2 1 4 4 C 1.53004 * 109.46746 * 119.99889 * 2 1 3 5 5 H 1.09008 * 109.46540 * 184.99961 * 4 2 1 6 6 C 1.52997 * 109.46982 * 304.99497 * 4 2 1 7 7 N 1.46504 * 109.46847 * 175.00059 * 6 4 2 8 8 C 1.34776 * 120.00034 * 180.02562 * 7 6 4 9 9 O 1.21631 * 119.99793 * 0.02562 * 8 7 6 10 10 C 1.47297 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.38368 * 120.57442 * 359.97438 * 10 8 7 12 12 C 1.38871 * 121.15376 * 179.75078 * 11 10 8 13 13 C 1.35569 * 122.43560 * 0.56984 * 12 11 10 14 14 C 1.41636 * 120.90091 * 359.42785 * 13 12 11 15 15 N 1.32400 * 131.03446 * 180.27464 * 14 13 12 16 16 S 1.55553 * 109.37275 * 180.02562 * 15 14 13 17 17 N 1.55558 * 100.17773 * 0.02562 * 16 15 14 18 18 C 1.31855 * 109.44356 * 359.97438 * 17 16 15 19 19 N 1.46497 * 109.47196 * 64.99817 * 4 2 1 20 20 C 1.36937 * 119.99584 * 85.00126 * 19 4 2 21 21 H 1.08000 * 120.00803 * 359.97438 * 20 19 4 22 22 C 1.38816 * 119.99861 * 180.02562 * 20 19 4 23 23 N 1.31619 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00104 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47188 * 59.99939 * 24 22 20 26 26 H 1.48505 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47197 * 299.99548 * 24 22 20 28 28 H 1.09001 * 109.46902 * 300.00227 * 1 2 3 29 29 H 1.09000 * 109.46800 * 60.00437 * 1 2 3 30 30 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46902 * 239.99773 * 2 1 3 32 32 H 1.09001 * 109.47423 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46918 * 299.99542 * 3 2 1 34 34 H 1.08998 * 109.47642 * 59.99606 * 3 2 1 35 35 H 1.09005 * 109.47156 * 55.00553 * 6 4 2 36 36 H 1.09000 * 109.47714 * 295.00094 * 6 4 2 37 37 H 0.97001 * 120.00248 * 0.02562 * 7 6 4 38 38 H 1.07996 * 119.42147 * 0.04592 * 11 10 8 39 39 H 1.07998 * 118.78053 * 180.27840 * 12 11 10 40 40 H 1.08002 * 119.55247 * 179.71304 * 13 12 11 41 41 H 0.96997 * 120.00079 * 264.99973 * 19 4 2 42 42 H 0.96999 * 120.00003 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1264 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 7 1.8226 -0.8396 3.6824 8 6 1.3987 -0.4540 4.9023 9 8 0.6896 0.5275 5.0175 10 6 1.7939 -1.2213 6.0959 11 6 2.5997 -2.3400 5.9785 12 6 2.9838 -3.0692 7.0962 13 6 2.5885 -2.7398 8.3504 14 6 1.7626 -1.6123 8.5802 15 7 1.2688 -1.1106 9.7015 16 16 0.4179 0.1492 9.3724 17 7 0.5778 0.1926 7.8257 18 6 1.3374 -0.8118 7.4347 19 7 1.6523 -2.1328 1.1907 20 6 2.4345 -3.0300 0.5136 21 1 3.3369 -2.6970 0.0225 22 6 2.0670 -4.3674 0.4576 23 7 0.9670 -4.7732 1.0556 24 14 3.1336 -5.5912 -0.4666 25 1 4.4913 -5.6172 0.1342 26 1 2.5263 -6.9435 -0.3773 27 1 3.2306 -5.1859 -1.8919 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.3434 -0.0734 2.4081 36 1 1.7896 0.9487 2.5870 37 1 2.3878 -1.6225 3.5905 38 1 2.9397 -2.6487 5.0010 39 1 3.6172 -3.9334 6.9607 40 1 2.9114 -3.3427 9.1863 41 1 0.8417 -2.4318 1.6314 42 1 0.7103 -5.7078 1.0168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268221297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:03 Heat of formation + Delta-G solvation = 51.600534 kcal Electronic energy + Delta-G solvation = -26170.537924 eV Core-core repulsion = 22470.960196 eV Total energy + Delta-G solvation = -3699.577728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.95782 -39.21850 -37.28686 -36.39130 -33.80767 -33.72387 -33.27039 -30.81465 -30.19463 -27.65248 -27.26991 -26.67054 -24.20854 -23.06069 -22.57760 -22.14656 -20.18357 -19.56138 -18.64909 -17.74861 -17.40030 -16.73885 -16.24095 -15.91337 -15.57496 -15.06323 -14.93636 -14.48505 -14.11187 -13.69922 -13.51735 -13.19684 -12.99462 -12.83792 -12.67023 -12.23763 -12.05720 -11.96403 -11.90651 -11.58347 -11.39924 -11.11483 -11.05834 -11.00624 -10.90194 -10.83491 -10.64730 -10.35662 -10.24947 -9.80957 -9.69141 -9.54843 -8.96256 -8.89443 -8.69396 -8.42183 -7.06092 -5.84745 -3.14924 -0.38156 1.24847 1.30705 1.39355 1.63917 2.92993 3.36471 3.38554 3.43636 3.44327 3.72527 4.08187 4.51322 4.63584 4.67449 4.82311 4.90263 5.11584 5.33869 5.37004 5.49580 5.62469 5.63167 5.68789 5.75730 5.82731 5.97939 5.99375 6.08678 6.09885 6.13204 6.18139 6.33682 6.38346 6.45352 6.61297 6.68205 6.71926 6.87110 7.00160 7.06116 7.62848 7.91758 8.32486 8.56553 9.44686 9.99303 10.35454 11.36717 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.003435 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.149434 B = 8148.481225 C = 9939.390338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.148 4.148 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.707 5.707 8 C 0.550 3.450 9 O -0.526 6.526 10 C -0.073 4.073 11 C -0.048 4.048 12 C -0.096 4.096 13 C -0.048 4.048 14 C 0.074 3.926 15 N -0.595 5.595 16 S 0.772 5.228 17 N -0.554 5.554 18 C 0.111 3.889 19 N -0.720 5.720 20 C -0.244 4.244 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.408 0.592 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.386 0.614 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 7.487 13.527 15.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.336 3.664 9 O -0.403 6.403 10 C -0.083 4.083 11 C -0.073 4.073 12 C -0.121 4.121 13 C -0.073 4.073 14 C -0.087 4.087 15 N -0.446 5.446 16 S 0.819 5.181 17 N -0.402 5.402 18 C -0.051 4.051 19 N -0.362 5.362 20 C -0.375 4.375 21 H 0.088 0.912 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.220 0.780 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.589 9.522 14.930 17.779 hybrid contribution 1.375 -2.391 -1.663 3.221 sum 2.965 7.131 13.266 15.350 Atomic orbital electron populations 1.21800 0.95829 1.02347 0.99967 1.21731 0.96043 0.94602 1.00912 1.21915 1.00519 0.97201 1.00984 1.20522 0.97159 0.85923 0.90442 0.92823 1.21852 1.00605 0.94610 0.84156 1.45897 1.52585 1.32007 1.05483 1.17800 0.81073 0.84643 0.82883 1.90820 1.36713 1.26543 1.86223 1.20362 1.01167 0.97545 0.89228 1.21550 0.93449 0.91807 1.00478 1.20648 0.99920 1.00318 0.91182 1.20302 0.95411 0.93325 0.98247 1.21261 1.01826 0.99672 0.85902 1.72230 1.20846 1.18743 1.32736 1.78668 1.30803 1.14078 0.94503 1.72209 1.23077 1.26652 1.18231 1.21988 0.96584 0.91050 0.95511 1.42457 1.28874 1.01164 1.63686 1.19165 1.03661 0.88497 1.26142 0.91191 1.24712 0.97639 0.97140 1.00904 1.69652 1.24408 1.15779 1.47788 0.86328 0.79609 0.80788 0.79754 1.21257 1.21800 1.21373 0.93389 0.94178 0.91599 0.90754 0.93198 0.93540 0.93000 0.91136 0.91600 0.75453 0.83166 0.83621 0.84073 0.78009 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.60 37.16 0.32 -2.04 16 2 C -0.11 -1.85 2.88 -90.62 -0.26 -2.11 16 3 C -0.15 -2.04 8.95 37.16 0.33 -1.71 16 4 C 0.17 3.03 2.22 -67.93 -0.15 2.88 16 5 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 6 C 0.11 1.88 4.53 -4.04 -0.02 1.87 16 7 N -0.71 -11.70 5.34 -61.42 -0.33 -12.03 16 8 C 0.55 9.74 7.77 -12.58 -0.10 9.65 16 9 O -0.53 -10.99 16.09 5.25 0.08 -10.91 16 10 C -0.07 -1.11 6.07 -102.50 -0.62 -1.73 16 11 C -0.05 -0.58 9.49 -39.30 -0.37 -0.95 16 12 C -0.10 -0.93 9.82 -40.30 -0.40 -1.33 16 13 C -0.05 -0.50 10.03 -39.24 -0.39 -0.90 16 14 C 0.07 0.99 7.17 -83.18 -0.60 0.39 16 15 N -0.60 -7.59 11.45 25.61 0.29 -7.29 16 16 S 0.77 8.60 23.60 -107.50 -2.54 6.06 16 17 N -0.55 -8.71 10.68 26.55 0.28 -8.43 16 18 C 0.11 1.73 7.05 -81.05 -0.57 1.16 16 19 N -0.72 -15.82 4.01 -53.42 -0.21 -16.03 16 20 C -0.24 -6.03 9.93 -15.06 -0.15 -6.18 16 21 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -25.89 13.06 55.49 0.72 -25.17 16 24 Si 0.90 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.05 0.76 6.23 -51.93 -0.32 0.44 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.27 7.75 -51.93 -0.40 0.86 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.05 0.69 6.68 -51.93 -0.35 0.34 16 35 H 0.07 1.28 6.06 -51.93 -0.31 0.97 16 36 H 0.07 1.06 6.81 -51.93 -0.35 0.70 16 37 H 0.41 6.48 6.17 -40.82 -0.25 6.23 16 38 H 0.15 1.66 6.36 -52.49 -0.33 1.33 16 39 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.39 9.31 7.80 -40.82 -0.32 8.99 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -31.96 361.87 -9.48 -41.45 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.15 Total: 12.34 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.07 Total: -1.29 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: 0.76 Total: -68.95 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 8.60 SS G_CDS: -2.54 Total: 6.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.96 -9.48 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268221297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.048 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds