Wall clock time and date at job start Tue Mar 31 2020 17:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47255 * 2 1 4 4 C 1.53004 * 109.46746 * 119.99889 * 2 1 3 5 5 H 1.09008 * 109.46540 * 184.99961 * 4 2 1 6 6 C 1.52997 * 109.46982 * 304.99497 * 4 2 1 7 7 N 1.46504 * 109.46847 * 175.00059 * 6 4 2 8 8 C 1.34776 * 120.00034 * 180.02562 * 7 6 4 9 9 O 1.21631 * 119.99793 * 0.02562 * 8 7 6 10 10 C 1.47297 * 120.00090 * 180.02562 * 8 7 6 11 11 C 1.38368 * 120.57442 * 359.97438 * 10 8 7 12 12 C 1.38871 * 121.15376 * 179.75078 * 11 10 8 13 13 C 1.35569 * 122.43560 * 0.56984 * 12 11 10 14 14 C 1.41636 * 120.90091 * 359.42785 * 13 12 11 15 15 N 1.32400 * 131.03446 * 180.27464 * 14 13 12 16 16 S 1.55553 * 109.37275 * 180.02562 * 15 14 13 17 17 N 1.55558 * 100.17773 * 0.02562 * 16 15 14 18 18 C 1.31855 * 109.44356 * 359.97438 * 17 16 15 19 19 N 1.46497 * 109.47196 * 64.99817 * 4 2 1 20 20 C 1.36937 * 119.99584 * 85.00126 * 19 4 2 21 21 H 1.08000 * 120.00803 * 359.97438 * 20 19 4 22 22 C 1.38816 * 119.99861 * 180.02562 * 20 19 4 23 23 N 1.31619 * 119.99782 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00104 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47188 * 59.99939 * 24 22 20 26 26 H 1.48505 * 109.47106 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47197 * 299.99548 * 24 22 20 28 28 H 1.09001 * 109.46902 * 300.00227 * 1 2 3 29 29 H 1.09000 * 109.46800 * 60.00437 * 1 2 3 30 30 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46902 * 239.99773 * 2 1 3 32 32 H 1.09001 * 109.47423 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46918 * 299.99542 * 3 2 1 34 34 H 1.08998 * 109.47642 * 59.99606 * 3 2 1 35 35 H 1.09005 * 109.47156 * 55.00553 * 6 4 2 36 36 H 1.09000 * 109.47714 * 295.00094 * 6 4 2 37 37 H 0.97001 * 120.00248 * 0.02562 * 7 6 4 38 38 H 1.07996 * 119.42147 * 0.04592 * 11 10 8 39 39 H 1.07998 * 118.78053 * 180.27840 * 12 11 10 40 40 H 1.08002 * 119.55247 * 179.71304 * 13 12 11 41 41 H 0.96997 * 120.00079 * 264.99973 * 19 4 2 42 42 H 0.96999 * 120.00003 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1264 -0.6443 1.2952 6 6 1.4299 -0.0761 2.4953 7 7 1.8226 -0.8396 3.6824 8 6 1.3987 -0.4540 4.9023 9 8 0.6896 0.5275 5.0175 10 6 1.7939 -1.2213 6.0959 11 6 2.5997 -2.3400 5.9785 12 6 2.9838 -3.0692 7.0962 13 6 2.5885 -2.7398 8.3504 14 6 1.7626 -1.6123 8.5802 15 7 1.2688 -1.1106 9.7015 16 16 0.4179 0.1492 9.3724 17 7 0.5778 0.1926 7.8257 18 6 1.3374 -0.8118 7.4347 19 7 1.6523 -2.1328 1.1907 20 6 2.4345 -3.0300 0.5136 21 1 3.3369 -2.6970 0.0225 22 6 2.0670 -4.3674 0.4576 23 7 0.9670 -4.7732 1.0556 24 14 3.1336 -5.5912 -0.4666 25 1 4.4913 -5.6172 0.1342 26 1 2.5263 -6.9435 -0.3773 27 1 3.2306 -5.1859 -1.8919 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8901 34 1 1.6767 1.9564 0.8899 35 1 0.3434 -0.0734 2.4081 36 1 1.7896 0.9487 2.5870 37 1 2.3878 -1.6225 3.5905 38 1 2.9397 -2.6487 5.0010 39 1 3.6172 -3.9334 6.9607 40 1 2.9114 -3.3427 9.1863 41 1 0.8417 -2.4318 1.6314 42 1 0.7103 -5.7078 1.0168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268221297.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:02 Heat of formation + Delta-G solvation = 29.843598 kcal Electronic energy + Delta-G solvation = -26171.481376 eV Core-core repulsion = 22470.960196 eV Total energy + Delta-G solvation = -3700.521180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95939 -40.54621 -38.74377 -37.35342 -35.14654 -35.01079 -34.81163 -32.26331 -31.54428 -28.77484 -28.57361 -27.94720 -25.83731 -24.46148 -23.71989 -23.32833 -21.37751 -20.62218 -19.95547 -19.24177 -18.74566 -18.00170 -17.42597 -16.96351 -16.83153 -16.56809 -16.05577 -15.81321 -15.47484 -15.30195 -14.90721 -14.86545 -14.30747 -14.00407 -13.74342 -13.65353 -13.11981 -12.88859 -12.83847 -12.80696 -12.76482 -12.67383 -12.57048 -12.42215 -12.18591 -12.10324 -12.04926 -11.85904 -11.81538 -11.48204 -11.20476 -10.93866 -10.76471 -10.04371 -9.80347 -9.45200 -8.92758 -7.84039 -5.12524 -1.33497 0.26914 0.36773 0.37720 0.72654 1.55189 1.57009 1.62184 1.83479 2.14596 2.61382 2.63661 3.05435 3.49142 3.64272 3.75797 3.90026 3.92038 3.94479 3.97910 4.20825 4.26789 4.36736 4.45773 4.54426 4.63900 4.77897 4.79650 4.88479 4.97027 5.11187 5.15167 5.17788 5.22171 5.24669 5.27803 5.32356 5.48332 5.58754 5.64004 5.69942 5.76994 6.35505 6.58821 7.23597 7.43965 8.15207 8.41270 9.38045 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.003435 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.149434 B = 8148.481225 C = 9939.390338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.140 4.140 4 C 0.173 3.827 5 H 0.060 0.940 6 C 0.121 3.879 7 N -0.703 5.703 8 C 0.549 3.451 9 O -0.568 6.568 10 C -0.118 4.118 11 C -0.024 4.024 12 C -0.096 4.096 13 C -0.034 4.034 14 C 0.058 3.942 15 N -0.604 5.604 16 S 0.846 5.154 17 N -0.611 5.611 18 C 0.089 3.911 19 N -0.725 5.725 20 C -0.232 4.232 21 H 0.077 0.923 22 C -0.063 4.063 23 N -0.964 5.964 24 Si 0.962 3.038 25 H -0.274 1.274 26 H -0.303 1.303 27 H -0.288 1.288 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.411 0.589 38 H 0.157 0.843 39 H 0.186 0.814 40 H 0.174 0.826 41 H 0.373 0.627 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 7.328 14.395 16.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.198 4.198 4 C 0.064 3.936 5 H 0.078 0.922 6 C -0.003 4.003 7 N -0.355 5.355 8 C 0.337 3.663 9 O -0.449 6.449 10 C -0.128 4.128 11 C -0.048 4.048 12 C -0.120 4.120 13 C -0.058 4.058 14 C -0.102 4.102 15 N -0.456 5.456 16 S 0.894 5.106 17 N -0.461 5.461 18 C -0.072 4.072 19 N -0.365 5.365 20 C -0.363 4.363 21 H 0.095 0.905 22 C -0.256 4.256 23 N -0.615 5.615 24 Si 0.792 3.208 25 H -0.200 1.200 26 H -0.230 1.230 27 H -0.215 1.215 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.175 0.825 39 H 0.203 0.797 40 H 0.191 0.809 41 H 0.205 0.795 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.479 9.383 15.771 18.678 hybrid contribution 0.788 -2.257 -1.831 3.011 sum 4.267 7.126 13.940 16.227 Atomic orbital electron populations 1.21730 0.95947 1.00532 1.01132 1.21621 0.95886 0.96358 0.99004 1.21835 1.01149 0.94828 1.02018 1.20648 0.97439 0.83988 0.91496 0.92205 1.21717 0.99567 0.95162 0.83886 1.45845 1.52437 1.31966 1.05290 1.18221 0.80167 0.84243 0.83654 1.90776 1.38738 1.28492 1.86851 1.20232 1.04584 0.99551 0.88441 1.21798 0.91068 0.90157 1.01826 1.21021 1.00041 1.00964 0.89956 1.20783 0.93407 0.92017 0.99579 1.21545 1.02806 1.00558 0.85245 1.72162 1.21174 1.19466 1.32793 1.78223 1.28441 1.12206 0.91759 1.71985 1.24740 1.28167 1.21184 1.22216 0.97093 0.91607 0.96265 1.42530 1.28066 1.02646 1.63255 1.19489 1.03438 0.88813 1.24599 0.90524 1.25337 0.98892 0.98832 1.02542 1.69805 1.26288 1.15371 1.49995 0.85393 0.78612 0.78231 0.78522 1.19963 1.23032 1.21498 0.92825 0.92409 0.94843 0.92630 0.92160 0.92066 0.92430 0.92719 0.90419 0.75076 0.82519 0.79681 0.80864 0.79479 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.60 71.98 0.62 -3.89 16 2 C -0.11 -3.47 2.88 -10.79 -0.03 -3.50 16 3 C -0.14 -3.56 8.95 71.98 0.64 -2.92 16 4 C 0.17 6.10 2.22 44.99 0.10 6.20 16 5 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 6 C 0.12 4.09 4.53 86.38 0.39 4.48 16 7 N -0.70 -23.65 5.34 -466.48 -2.49 -26.14 16 8 C 0.55 20.08 7.77 86.63 0.67 20.76 16 9 O -0.57 -24.79 16.09 -4.13 -0.07 -24.86 16 10 C -0.12 -3.65 6.07 -18.49 -0.11 -3.77 16 11 C -0.02 -0.54 9.49 22.45 0.21 -0.33 16 12 C -0.10 -1.57 9.82 21.80 0.21 -1.36 16 13 C -0.03 -0.60 10.03 22.49 0.23 -0.38 16 14 C 0.06 1.46 7.17 41.93 0.30 1.76 16 15 N -0.60 -14.48 11.45 -72.90 -0.83 -15.32 16 16 S 0.85 18.26 23.60 -56.49 -1.33 16.93 16 17 N -0.61 -19.58 10.68 -69.90 -0.75 -20.33 16 18 C 0.09 2.79 7.05 43.55 0.31 3.10 16 19 N -0.72 -32.07 4.01 -322.93 -1.30 -33.37 16 20 C -0.23 -11.40 9.93 84.03 0.83 -10.56 16 21 H 0.08 3.63 7.83 -2.91 -0.02 3.60 16 22 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 23 N -0.96 -54.66 13.06 21.65 0.28 -54.38 16 24 Si 0.96 42.82 29.55 68.60 2.03 44.85 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 28 H 0.05 1.70 6.23 -2.39 -0.01 1.68 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.30 7.75 -2.39 -0.02 1.29 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.06 1.41 6.68 -2.39 -0.02 1.39 16 35 H 0.05 2.04 6.06 -2.38 -0.01 2.03 16 36 H 0.08 2.46 6.81 -2.39 -0.02 2.44 16 37 H 0.41 13.12 6.17 -92.71 -0.57 12.54 16 38 H 0.16 3.29 6.36 -2.91 -0.02 3.27 16 39 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.37 18.48 7.80 -92.71 -0.72 17.75 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -71.02 361.87 0.18 -70.84 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.21 Total: 35.02 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.85 Total: 6.76 kcal Atomic # 7 Polarization: -144.45 SS G_CDS: -5.08 Total: -149.54 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.07 Total: -24.86 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 18.26 SS G_CDS: -1.33 Total: 16.93 kcal Total: -71.02 0.18 -70.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268221297.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.686 kcal (2) G-P(sol) polarization free energy of solvation -71.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds