Wall clock time and date at job start Tue Mar 31 2020 17:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09004 * 109.46901 * 305.00163 * 3 2 1 5 5 C 1.52993 * 109.47133 * 185.00224 * 3 2 1 6 6 N 1.46493 * 109.47346 * 185.00123 * 5 3 2 7 7 C 1.34781 * 120.00398 * 180.02562 * 6 5 3 8 8 O 1.21611 * 119.99778 * 359.97438 * 7 6 5 9 9 C 1.47383 * 120.00088 * 180.02562 * 7 6 5 10 10 C 1.47019 * 127.19101 * 0.02562 * 9 7 6 11 11 C 1.34179 * 105.95259 * 180.02562 * 10 9 7 12 12 C 1.50705 * 125.43666 * 180.02562 * 11 10 9 13 13 O 1.34209 * 109.12485 * 359.97438 * 11 10 9 14 14 C 1.33657 * 110.90872 * 359.72544 * 13 11 10 15 15 C 1.50697 * 125.80483 * 180.28425 * 14 13 11 16 16 F 1.39898 * 109.47232 * 270.19279 * 15 14 13 17 17 F 1.39903 * 109.47191 * 30.18918 * 15 14 13 18 18 F 1.39896 * 109.47298 * 150.19023 * 15 14 13 19 19 N 1.46493 * 109.46887 * 64.99846 * 3 2 1 20 20 C 1.36936 * 120.00314 * 274.99849 * 19 3 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 3 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 3 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.08991 * 109.47041 * 60.00392 * 1 2 3 29 29 H 1.09002 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47269 * 299.99541 * 1 2 3 31 31 H 1.09000 * 109.47269 * 240.00459 * 2 1 3 32 32 H 1.09000 * 109.47618 * 119.99782 * 2 1 3 33 33 H 1.09009 * 109.47018 * 304.99771 * 5 3 2 34 34 H 1.09002 * 109.47579 * 64.99441 * 5 3 2 35 35 H 0.96998 * 119.99959 * 359.97438 * 6 5 3 36 36 H 1.08000 * 127.02774 * 0.02622 * 10 9 7 37 37 H 1.09001 * 109.46826 * 90.00329 * 12 11 10 38 38 H 1.09003 * 109.46742 * 209.99896 * 12 11 10 39 39 H 1.08993 * 109.46919 * 330.00247 * 12 11 10 40 40 H 0.97000 * 120.00040 * 94.99981 * 19 3 2 41 41 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0632 -0.0869 8 8 6.1655 2.1461 -0.2589 9 6 5.8868 4.4439 0.0342 10 6 5.0919 5.6626 0.2445 11 6 5.9725 6.6740 0.2897 12 6 5.6252 8.1267 0.4905 13 8 7.2121 6.1853 0.1286 14 6 7.1857 4.8572 -0.0192 15 6 8.3864 3.9681 -0.2160 16 9 8.6556 3.8439 -1.5832 17 9 9.4937 4.5304 0.4281 18 9 8.1246 2.7045 0.3243 19 7 1.6524 2.0975 1.2518 20 6 0.4156 2.6734 1.3688 21 1 -0.2743 2.6446 0.5383 22 6 0.0486 3.2944 2.5547 23 7 -1.1382 3.8528 2.6653 24 14 1.2421 3.3451 3.9909 25 1 1.0351 2.1507 4.8488 26 1 2.6352 3.3499 3.4768 27 1 1.0047 4.5748 4.7887 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8900 33 1 3.9954 0.8312 0.6659 34 1 3.8499 1.0377 -1.0961 35 1 3.4409 3.5484 0.1308 36 1 4.0185 5.7302 0.3425 37 1 5.6273 8.3568 1.5559 38 1 6.3615 8.7498 -0.0172 39 1 4.6358 8.3240 0.0781 40 1 2.2718 2.1231 1.9978 41 1 -1.3932 4.2902 3.4927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269476244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:51 Heat of formation + Delta-G solvation = -178.192548 kcal Electronic energy + Delta-G solvation = -29727.634739 eV Core-core repulsion = 25001.190072 eV Total energy + Delta-G solvation = -4726.444667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.36002 -48.91181 -48.80856 -44.01209 -40.70482 -38.42313 -35.42382 -34.56978 -34.05299 -33.65205 -32.06642 -29.96875 -29.32800 -26.44537 -25.39969 -24.56644 -23.62855 -22.19835 -21.78032 -20.96640 -20.26392 -19.80689 -19.53965 -19.36839 -18.00595 -17.67528 -17.13320 -16.94894 -16.24977 -16.15323 -15.83681 -15.73255 -15.58302 -15.43867 -15.22558 -14.96718 -14.93925 -14.78122 -14.67621 -14.48383 -14.20027 -14.14850 -14.07346 -13.86164 -13.61430 -13.10465 -12.91426 -12.90125 -12.86818 -12.30392 -12.10728 -11.89382 -11.58949 -11.40260 -11.25935 -11.22228 -10.92616 -10.16504 -10.00787 -9.28388 -7.93698 -5.25811 -0.42269 0.60857 0.75926 1.39812 1.43607 1.48830 1.73222 1.98430 2.03172 2.46437 2.52756 3.02990 3.06759 3.30700 3.37973 3.45292 3.60986 3.87658 3.97772 4.13846 4.31238 4.34749 4.45326 4.56193 4.59633 4.68521 4.73160 4.82774 4.89615 5.07909 5.10616 5.20561 5.22086 5.37292 5.52744 5.57184 5.74068 5.89293 6.28700 6.38909 7.00755 7.14663 7.89103 8.07697 9.27213 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012494 B = 0.003896 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.574760 B = 7184.978282 C = 8514.576370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.063 0.937 5 C 0.119 3.881 6 N -0.698 5.698 7 C 0.568 3.432 8 O -0.554 6.554 9 C -0.162 4.162 10 C -0.201 4.201 11 C 0.042 3.958 12 C -0.079 4.079 13 O -0.150 6.150 14 C -0.070 4.070 15 C 0.559 3.441 16 F -0.166 7.166 17 F -0.168 7.168 18 F -0.140 7.140 19 N -0.747 5.747 20 C -0.204 4.204 21 H 0.071 0.929 22 C -0.055 4.055 23 N -0.981 5.981 24 Si 0.937 3.063 25 H -0.293 1.293 26 H -0.254 1.254 27 H -0.301 1.301 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.413 0.587 36 H 0.187 0.813 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.362 0.638 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.915 5.484 -7.167 19.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.061 3.939 4 H 0.081 0.919 5 C -0.005 4.005 6 N -0.349 5.349 7 C 0.355 3.645 8 O -0.434 6.434 9 C -0.167 4.167 10 C -0.220 4.220 11 C -0.008 4.008 12 C -0.135 4.135 13 O -0.046 6.046 14 C -0.123 4.123 15 C 0.505 3.495 16 F -0.147 7.147 17 F -0.149 7.149 18 F -0.121 7.121 19 N -0.390 5.390 20 C -0.335 4.335 21 H 0.088 0.912 22 C -0.247 4.247 23 N -0.632 5.632 24 Si 0.767 3.233 25 H -0.221 1.221 26 H -0.179 1.179 27 H -0.228 1.228 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.204 0.796 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.195 0.805 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.532 5.041 -7.374 19.676 hybrid contribution -0.038 0.067 1.304 1.307 sum 17.493 5.108 -6.070 19.208 Atomic orbital electron populations 1.21691 0.96309 1.00429 1.01650 1.21965 0.96154 0.96930 1.01795 1.20699 0.90841 0.93488 0.88901 0.91911 1.21739 0.94029 0.82028 1.02695 1.45776 1.06297 1.11344 1.71448 1.17422 0.83004 0.86808 0.77296 1.90865 1.56034 1.45895 1.50651 1.21502 0.92578 0.95701 1.06898 1.23054 1.02120 0.88548 1.08233 1.23461 0.79152 0.98993 0.99217 1.20789 1.04785 0.82534 1.05408 1.83697 1.33051 1.18051 1.69756 1.21970 0.94210 0.83696 1.12452 1.16684 0.79527 0.78496 0.74836 1.93249 1.94019 1.96031 1.31375 1.93241 1.55184 1.84959 1.81531 1.93406 1.93388 1.39681 1.85620 1.42837 1.15323 1.67681 1.13187 1.18959 0.91146 1.25043 0.98344 0.91154 1.25226 0.97754 1.01581 1.00091 1.69845 1.21736 1.44348 1.27306 0.85690 0.80430 0.76327 0.80872 1.22063 1.17912 1.22835 0.93815 0.92866 0.93491 0.90200 0.92641 0.91737 0.89314 0.74996 0.79595 0.87664 0.88237 0.86418 0.80458 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.18 71.98 0.66 -4.12 16 2 C -0.13 -3.77 5.61 30.60 0.17 -3.60 16 3 C 0.17 5.37 2.59 44.99 0.12 5.49 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 3.40 5.23 86.38 0.45 3.85 16 6 N -0.70 -20.49 5.38 -466.42 -2.51 -23.00 16 7 C 0.57 17.91 7.76 86.65 0.67 18.58 16 8 O -0.55 -19.99 13.20 -4.06 -0.05 -20.04 16 9 C -0.16 -4.52 6.27 -18.99 -0.12 -4.64 16 10 C -0.20 -4.43 10.48 23.65 0.25 -4.18 16 11 C 0.04 0.78 7.28 24.76 0.18 0.96 16 12 C -0.08 -0.74 10.40 71.24 0.74 0.00 16 13 O -0.15 -3.46 10.51 4.48 0.05 -3.41 16 14 C -0.07 -1.88 6.70 25.26 0.17 -1.71 16 15 C 0.56 15.36 3.35 71.23 0.24 15.60 16 16 F -0.17 -4.50 17.30 44.97 0.78 -3.72 16 17 F -0.17 -4.22 17.29 44.97 0.78 -3.44 16 18 F -0.14 -4.43 13.48 44.97 0.61 -3.82 16 19 N -0.75 -29.74 4.31 -322.95 -1.39 -31.13 16 20 C -0.20 -10.07 8.24 84.03 0.69 -9.38 16 21 H 0.07 3.81 7.55 -2.91 -0.02 3.79 16 22 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 23 N -0.98 -58.55 13.97 21.65 0.30 -58.24 16 24 Si 0.94 42.74 27.74 68.60 1.90 44.64 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.25 -10.45 6.51 99.48 0.65 -9.81 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.95 5.99 -2.39 -0.01 1.94 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.41 11.86 7.31 -92.71 -0.68 11.19 16 36 H 0.19 3.55 7.74 -2.91 -0.02 3.52 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.36 14.59 5.65 -92.71 -0.52 14.07 16 41 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -65.80 356.40 4.98 -60.82 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: -0.16 Total: 26.99 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 4.69 Total: 14.37 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -3.60 Total: -112.38 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.01 Total: -23.45 kcal Atomic # 9 Polarization: -13.15 SS G_CDS: 2.16 Total: -10.98 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.90 Total: 44.64 kcal Total: -65.80 4.98 -60.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269476244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.373 kcal (2) G-P(sol) polarization free energy of solvation -65.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds