Wall clock time and date at job start Tue Mar 31 2020 17:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21611 * 120.00266 * 359.97438 * 7 6 5 9 9 C 1.47385 * 119.99710 * 179.97438 * 7 6 5 10 10 C 1.47017 * 127.19443 * 0.02562 * 9 7 6 11 11 C 1.34171 * 105.95776 * 180.02562 * 10 9 7 12 12 C 1.50702 * 125.44033 * 179.97438 * 11 10 9 13 13 O 1.34218 * 109.12079 * 0.02562 * 11 10 9 14 14 C 1.33651 * 110.91012 * 359.72522 * 13 11 10 15 15 C 1.50701 * 125.80214 * 180.28576 * 14 13 11 16 16 F 1.39898 * 109.47242 * 270.18664 * 15 14 13 17 17 F 1.39899 * 109.46972 * 30.19180 * 15 14 13 18 18 F 1.39904 * 109.46790 * 150.18694 * 15 14 13 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08003 * 127.02416 * 0.02562 * 10 9 7 37 37 H 1.09004 * 109.46586 * 90.00143 * 12 11 10 38 38 H 1.08998 * 109.47021 * 209.99587 * 12 11 10 39 39 H 1.08995 * 109.46811 * 330.00408 * 12 11 10 40 40 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1657 2.1458 0.2576 9 6 5.8870 4.4436 -0.0352 10 6 5.0920 5.6627 -0.2432 11 6 5.9727 6.6738 -0.2904 12 6 5.6254 8.1266 -0.4900 13 8 7.2126 6.1846 -0.1325 14 6 7.1852 4.8579 0.0269 15 6 8.3849 3.9703 0.2362 16 9 8.8688 3.5400 -1.0039 17 9 9.3842 4.6865 0.9037 18 9 8.0154 2.8602 1.0033 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -1.7782 5.1545 -1.6831 26 1 -1.7766 4.6867 -4.0628 27 1 -2.6855 3.0627 -2.5086 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 4.0184 5.7306 -0.3386 37 1 5.4585 8.5967 0.4793 38 1 6.4463 8.6295 -1.0011 39 1 4.7202 8.2043 -1.0921 40 1 2.2720 2.1232 -1.9978 41 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269476246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:55 Heat of formation + Delta-G solvation = -162.929022 kcal Electronic energy + Delta-G solvation = -29607.178302 eV Core-core repulsion = 24881.395512 eV Total energy + Delta-G solvation = -4725.782790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.17861 -47.75739 -47.58491 -42.95260 -39.28595 -36.74827 -33.94381 -33.36452 -32.69655 -32.37069 -29.81520 -28.69039 -27.98841 -25.24565 -24.04294 -23.23645 -22.36191 -21.03393 -20.22484 -19.62102 -18.95761 -18.61903 -18.27457 -17.35184 -16.75319 -16.60220 -15.64412 -15.36276 -15.12152 -14.66993 -14.55441 -14.41550 -14.13811 -14.04667 -14.01879 -13.76599 -13.73491 -13.47154 -13.38329 -13.31311 -13.12919 -12.92309 -12.67591 -12.58503 -12.18490 -12.06270 -11.49134 -11.01262 -10.92692 -10.78322 -10.48598 -10.24589 -10.09028 -10.07800 -9.81746 -9.58201 -9.05937 -9.00991 -8.70337 -7.09498 -5.86623 -3.16318 0.74862 1.69732 1.77397 2.84444 3.29964 3.34952 3.37875 3.41188 3.42135 3.57684 4.11064 4.24046 4.38558 4.48777 4.64416 4.99431 5.06132 5.16177 5.19106 5.34473 5.38907 5.47601 5.51376 5.60885 5.87337 5.92385 5.93006 6.01439 6.11812 6.38433 6.48952 6.53418 6.56267 6.57957 6.80438 6.98190 7.21101 7.60737 7.78727 8.30251 8.39585 9.42323 9.97027 10.33178 11.34930 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003608 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.255741 B = 7759.349610 C = 9352.403819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.115 3.885 6 N -0.695 5.695 7 C 0.570 3.430 8 O -0.532 6.532 9 C -0.142 4.142 10 C -0.184 4.184 11 C 0.024 3.976 12 C -0.078 4.078 13 O -0.150 6.150 14 C -0.059 4.059 15 C 0.558 3.442 16 F -0.164 7.164 17 F -0.175 7.175 18 F -0.127 7.127 19 N -0.722 5.722 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.412 0.588 36 H 0.175 0.825 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.385 0.615 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.957 6.301 8.578 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.346 5.346 7 C 0.355 3.645 8 O -0.411 6.411 9 C -0.147 4.147 10 C -0.203 4.203 11 C -0.026 4.026 12 C -0.134 4.134 13 O -0.046 6.046 14 C -0.113 4.113 15 C 0.503 3.497 16 F -0.145 7.145 17 F -0.156 7.156 18 F -0.108 7.108 19 N -0.364 5.364 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.577 5.577 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.192 0.808 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.600 5.862 8.710 15.646 hybrid contribution -1.109 0.562 -0.574 1.369 sum 10.491 6.425 8.136 14.749 Atomic orbital electron populations 1.21767 0.95688 0.99674 1.03232 1.22063 0.96986 0.98287 1.00110 1.20576 0.89748 0.92954 0.91478 0.92764 1.21758 0.95750 0.81977 1.01475 1.45752 1.06297 1.11251 1.71318 1.17176 0.83203 0.86249 0.77876 1.90874 1.55634 1.44926 1.49620 1.21506 0.91796 0.95818 1.05564 1.22868 1.01360 0.89165 1.06864 1.22614 0.80271 0.97424 1.02245 1.20489 1.03443 0.85481 1.03974 1.83660 1.31936 1.19010 1.70031 1.22036 0.94530 0.83013 1.11697 1.16699 0.79237 0.78485 0.75250 1.93265 1.88471 1.90274 1.42492 1.93227 1.63281 1.78177 1.80906 1.93435 1.90756 1.51799 1.74806 1.42464 1.16786 1.65890 1.11281 1.19158 0.92019 1.27725 0.98115 0.90943 1.24728 0.97988 1.01512 0.96383 1.69653 1.35251 1.48703 1.04056 0.86349 0.84301 0.79265 0.76730 1.21322 1.21791 1.21257 0.94851 0.94127 0.89662 0.92466 0.93781 0.91455 0.91447 0.75137 0.80787 0.89253 0.89928 0.88143 0.78060 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.18 37.16 0.34 -2.19 16 2 C -0.13 -2.23 5.61 -26.73 -0.15 -2.38 16 3 C 0.16 2.89 2.59 -67.93 -0.18 2.71 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.89 5.23 -4.04 -0.02 1.87 16 6 N -0.70 -11.45 5.38 -61.39 -0.33 -11.78 16 7 C 0.57 9.81 7.76 -12.54 -0.10 9.71 16 8 O -0.53 -10.30 13.19 5.27 0.07 -10.23 16 9 C -0.14 -2.17 6.27 -103.28 -0.65 -2.82 16 10 C -0.18 -2.34 10.48 -37.46 -0.39 -2.73 16 11 C 0.02 0.27 7.28 -35.74 -0.26 0.01 16 12 C -0.08 -0.53 10.40 36.01 0.37 -0.16 16 13 O -0.15 -1.97 10.51 7.65 0.08 -1.89 16 14 C -0.06 -0.87 6.70 -34.96 -0.23 -1.11 16 15 C 0.56 8.19 3.35 36.01 0.12 8.31 16 16 F -0.16 -2.47 17.30 2.25 0.04 -2.43 16 17 F -0.17 -2.32 17.29 2.25 0.04 -2.28 16 18 F -0.13 -2.07 13.48 2.25 0.03 -2.04 16 19 N -0.72 -15.84 4.51 -53.42 -0.24 -16.08 16 20 C -0.24 -5.84 7.75 -15.06 -0.12 -5.96 16 21 H 0.07 1.73 7.32 -52.49 -0.38 1.34 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -25.95 13.06 55.49 0.72 -25.22 16 24 Si 0.90 20.78 29.55 -169.99 -5.02 15.76 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.41 6.72 7.31 -40.82 -0.30 6.42 16 36 H 0.17 1.99 7.74 -52.48 -0.41 1.59 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.39 9.34 7.80 -40.82 -0.32 9.02 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -29.09 359.52 -5.63 -34.72 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -5.08 Total: 11.14 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.36 Total: 4.92 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.15 Total: -53.09 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.15 Total: -12.12 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.09 -5.63 -34.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269476246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.210 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds