Wall clock time and date at job start Tue Mar 31 2020 17:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21611 * 120.00266 * 359.97438 * 7 6 5 9 9 C 1.47385 * 119.99710 * 179.97438 * 7 6 5 10 10 C 1.47017 * 127.19443 * 0.02562 * 9 7 6 11 11 C 1.34171 * 105.95776 * 180.02562 * 10 9 7 12 12 C 1.50702 * 125.44033 * 179.97438 * 11 10 9 13 13 O 1.34218 * 109.12079 * 0.02562 * 11 10 9 14 14 C 1.33651 * 110.91012 * 359.72522 * 13 11 10 15 15 C 1.50701 * 125.80214 * 180.28576 * 14 13 11 16 16 F 1.39898 * 109.47242 * 270.18664 * 15 14 13 17 17 F 1.39899 * 109.46972 * 30.19180 * 15 14 13 18 18 F 1.39904 * 109.46790 * 150.18694 * 15 14 13 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08003 * 127.02416 * 0.02562 * 10 9 7 37 37 H 1.09004 * 109.46586 * 90.00143 * 12 11 10 38 38 H 1.08998 * 109.47021 * 209.99587 * 12 11 10 39 39 H 1.08995 * 109.46811 * 330.00408 * 12 11 10 40 40 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 41 41 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1657 2.1458 0.2576 9 6 5.8870 4.4436 -0.0352 10 6 5.0920 5.6627 -0.2432 11 6 5.9727 6.6738 -0.2904 12 6 5.6254 8.1266 -0.4900 13 8 7.2126 6.1846 -0.1325 14 6 7.1852 4.8579 0.0269 15 6 8.3849 3.9703 0.2362 16 9 8.8688 3.5400 -1.0039 17 9 9.3842 4.6865 0.9037 18 9 8.0154 2.8602 1.0033 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -1.7782 5.1545 -1.6831 26 1 -1.7766 4.6867 -4.0628 27 1 -2.6855 3.0627 -2.5086 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 4.0184 5.7306 -0.3386 37 1 5.4585 8.5967 0.4793 38 1 6.4463 8.6295 -1.0011 39 1 4.7202 8.2043 -1.0921 40 1 2.2720 2.1232 -1.9978 41 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269476246.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:54 Heat of formation + Delta-G solvation = -180.670409 kcal Electronic energy + Delta-G solvation = -29607.947626 eV Core-core repulsion = 24881.395512 eV Total energy + Delta-G solvation = -4726.552115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.34207 -48.89766 -48.78618 -43.98071 -40.64835 -38.27760 -35.36652 -34.54047 -34.01985 -33.62482 -31.48601 -29.83656 -29.25583 -26.43297 -25.54116 -24.68222 -23.62234 -22.16405 -21.65786 -20.85326 -20.15504 -19.78226 -19.45230 -19.12236 -17.97725 -17.63975 -17.06308 -16.85002 -16.21590 -16.14053 -15.74536 -15.71054 -15.53688 -15.41426 -15.21420 -14.98028 -14.94881 -14.90815 -14.57719 -14.25790 -14.16865 -14.11568 -13.84866 -13.72554 -13.59130 -12.97740 -12.87847 -12.77506 -12.72087 -12.35614 -12.12198 -11.86541 -11.62017 -11.31580 -11.20845 -11.18979 -10.85005 -10.11525 -9.97090 -8.95543 -7.84394 -5.11896 -0.39082 0.63277 0.79481 1.53058 1.55104 1.59932 1.75326 2.00586 2.10145 2.48694 2.62455 3.05850 3.08257 3.34649 3.46793 3.52517 3.90640 3.96372 4.01093 4.16711 4.36074 4.39407 4.49513 4.57774 4.61587 4.70935 4.75615 4.88999 4.92035 5.10685 5.13427 5.22311 5.24095 5.41483 5.56898 5.59929 5.64196 5.74115 6.34989 6.44323 7.05547 7.43363 8.14307 8.39831 9.38101 Molecular weight = 334.13amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003608 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.255741 B = 7759.349610 C = 9352.403819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.165 3.835 4 H 0.062 0.938 5 C 0.122 3.878 6 N -0.692 5.692 7 C 0.567 3.433 8 O -0.558 6.558 9 C -0.160 4.160 10 C -0.198 4.198 11 C 0.041 3.959 12 C -0.078 4.078 13 O -0.150 6.150 14 C -0.071 4.071 15 C 0.560 3.440 16 F -0.169 7.169 17 F -0.166 7.166 18 F -0.139 7.139 19 N -0.728 5.728 20 C -0.217 4.217 21 H 0.080 0.920 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.958 3.042 25 H -0.276 1.276 26 H -0.305 1.305 27 H -0.286 1.286 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.413 0.587 36 H 0.184 0.816 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.372 0.628 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.444 7.327 10.027 16.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.056 3.944 4 H 0.080 0.920 5 C -0.002 4.002 6 N -0.342 5.342 7 C 0.353 3.647 8 O -0.439 6.439 9 C -0.165 4.165 10 C -0.217 4.217 11 C -0.009 4.009 12 C -0.134 4.134 13 O -0.046 6.046 14 C -0.125 4.125 15 C 0.505 3.495 16 F -0.150 7.150 17 F -0.147 7.147 18 F -0.120 7.120 19 N -0.368 5.368 20 C -0.349 4.349 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.618 5.618 24 Si 0.789 3.211 25 H -0.202 1.202 26 H -0.232 1.232 27 H -0.212 1.212 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.250 0.750 36 H 0.202 0.798 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.204 0.796 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.073 6.880 10.214 16.561 hybrid contribution -0.925 0.225 -0.940 1.338 sum 10.148 7.105 9.274 15.475 Atomic orbital electron populations 1.21693 0.95913 1.00561 1.01836 1.21989 0.96663 0.97314 1.01077 1.20717 0.90557 0.93401 0.89677 0.92015 1.21683 0.94634 0.82014 1.01917 1.45721 1.06231 1.11235 1.71039 1.17451 0.83060 0.86907 0.77243 1.90852 1.56156 1.45972 1.50912 1.21497 0.92664 0.95646 1.06679 1.23010 1.02008 0.88530 1.08122 1.23457 0.79099 0.98986 0.99365 1.20776 1.04429 0.82491 1.05663 1.83689 1.32982 1.18135 1.69761 1.21954 0.94192 0.83727 1.12589 1.16680 0.79556 0.78293 0.74993 1.93250 1.88569 1.90377 1.42804 1.93237 1.62941 1.77865 1.80700 1.93405 1.90926 1.52542 1.75082 1.42580 1.15834 1.66129 1.12289 1.19454 0.92512 1.25303 0.97636 0.90174 1.25335 1.00771 1.03407 0.96623 1.69803 1.36862 1.50791 1.04373 0.85445 0.81102 0.78561 0.76027 1.20211 1.23181 1.21231 0.92980 0.93082 0.93269 0.93651 0.90626 0.89690 0.92729 0.75008 0.79831 0.86966 0.88479 0.86901 0.79588 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.18 71.98 0.66 -3.99 16 2 C -0.13 -4.08 5.61 30.59 0.17 -3.91 16 3 C 0.17 5.63 2.59 44.99 0.12 5.75 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.90 5.23 86.38 0.45 4.35 16 6 N -0.69 -22.54 5.38 -466.39 -2.51 -25.05 16 7 C 0.57 19.57 7.76 86.65 0.67 20.24 16 8 O -0.56 -21.82 13.19 -4.06 -0.05 -21.87 16 9 C -0.16 -4.86 6.27 -18.99 -0.12 -4.98 16 10 C -0.20 -4.82 10.48 23.65 0.25 -4.57 16 11 C 0.04 0.83 7.28 24.76 0.18 1.01 16 12 C -0.08 -0.82 10.40 71.24 0.74 -0.08 16 13 O -0.15 -3.73 10.51 4.45 0.05 -3.68 16 14 C -0.07 -2.07 6.70 25.26 0.17 -1.90 16 15 C 0.56 16.44 3.35 71.24 0.24 16.68 16 16 F -0.17 -5.13 17.30 44.97 0.78 -4.35 16 17 F -0.17 -4.34 17.29 44.97 0.78 -3.56 16 18 F -0.14 -4.57 13.48 44.97 0.61 -3.96 16 19 N -0.73 -31.66 4.51 -322.93 -1.46 -33.12 16 20 C -0.22 -10.46 7.75 84.04 0.65 -9.81 16 21 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 22 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 23 N -0.97 -54.93 13.06 21.65 0.28 -54.65 16 24 Si 0.96 42.71 29.55 68.60 2.03 44.74 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 27 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.96 5.99 -2.39 -0.01 1.95 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 13.29 7.31 -92.71 -0.68 12.61 16 36 H 0.18 4.00 7.74 -2.91 -0.02 3.98 16 37 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.37 18.25 7.80 -92.71 -0.72 17.52 16 41 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -62.78 359.52 4.84 -57.93 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: -0.30 Total: 31.90 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 4.65 Total: 15.67 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -3.68 Total: -112.82 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.01 Total: -25.55 kcal Atomic # 9 Polarization: -14.04 SS G_CDS: 2.16 Total: -11.87 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -62.78 4.84 -57.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269476246.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.737 kcal (2) G-P(sol) polarization free energy of solvation -62.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds