Wall clock time and date at job start Tue Mar 31 2020 18:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46613 * 2 1 4 4 N 1.46498 * 109.47391 * 240.00093 * 2 1 3 5 5 C 1.34778 * 120.00108 * 84.99714 * 4 2 1 6 6 O 1.21282 * 120.00112 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00004 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.47286 * 180.02562 * 7 5 4 9 9 C 1.30905 * 121.83905 * 84.97577 * 8 7 5 10 10 S 1.75781 * 109.81935 * 180.02562 * 9 8 7 11 11 C 1.76247 * 90.70000 * 0.02562 * 10 9 8 12 12 N 1.32354 * 141.95515 * 180.02562 * 11 10 9 13 13 C 1.33874 * 109.13818 * 179.97438 * 12 11 10 14 14 C 1.34334 * 108.38765 * 359.97438 * 13 12 11 15 15 N 1.35149 * 109.22168 * 359.97438 * 11 10 9 16 16 C 1.53002 * 109.47087 * 119.99517 * 2 1 3 17 17 C 1.53938 * 113.74471 * 281.68053 * 16 2 1 18 18 N 1.47575 * 86.12056 * 222.04854 * 17 16 2 19 19 C 1.36934 * 134.49747 * 204.64508 * 18 17 16 20 20 H 1.08000 * 120.00189 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99824 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99859 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46878 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47378 * 119.99734 * 23 21 19 26 26 H 1.48501 * 109.47081 * 239.99989 * 23 21 19 27 27 C 1.47578 * 91.01495 * 24.64070 * 18 17 16 28 28 H 1.09002 * 109.46851 * 60.02842 * 1 2 3 29 29 H 1.08992 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47050 * 300.03331 * 1 2 3 31 31 H 0.97000 * 119.99623 * 265.00254 * 4 2 1 32 32 H 1.09008 * 109.47028 * 59.99886 * 7 5 4 33 33 H 1.09001 * 109.46632 * 300.00267 * 7 5 4 34 34 H 1.08002 * 125.08850 * 0.02562 * 9 8 7 35 35 H 1.08001 * 125.80879 * 180.02562 * 13 12 11 36 36 H 1.08001 * 126.43955 * 180.02562 * 14 13 12 37 37 H 1.09001 * 112.94176 * 53.41705 * 16 2 1 38 38 H 1.09001 * 113.77023 * 336.35041 * 17 16 2 39 39 H 1.09005 * 113.77151 * 107.74461 * 17 16 2 40 40 H 0.96997 * 119.99452 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.77549 * 221.06243 * 27 18 17 42 42 H 1.09005 * 113.87437 * 89.67186 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1586 -2.4115 7 6 2.6490 -0.7288 -3.5877 8 6 2.7004 0.2397 -4.7412 9 6 3.7314 1.0211 -4.9414 10 16 3.4581 2.0154 -6.3650 11 6 1.8803 1.2692 -6.6099 12 7 0.8294 1.2932 -7.4141 13 6 -0.0728 0.4025 -6.9842 14 6 0.4150 -0.1987 -5.8864 15 7 1.6666 0.3519 -5.6406 16 6 2.0400 -0.7212 1.2493 17 6 1.9777 0.1342 2.5276 18 7 3.3098 -0.4177 2.8417 19 6 4.0195 -0.6142 3.9962 20 1 5.0065 -1.0506 3.9557 21 6 3.4700 -0.2526 5.2186 22 7 2.2673 0.2797 5.2679 23 14 4.4383 -0.5200 6.7936 24 1 5.7535 -1.1283 6.4688 25 1 4.6496 0.7839 7.4723 26 1 3.6814 -1.4286 7.6917 27 6 3.5702 -0.6729 1.4116 28 1 -0.3633 0.5134 -0.8903 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5144 0.8897 31 1 2.2491 -1.6317 -1.1525 32 1 1.9761 -1.5506 -3.8325 33 1 3.6481 -1.1213 -3.3985 34 1 4.6172 1.0505 -4.3243 35 1 -1.0298 0.2009 -7.4425 36 1 -0.0738 -0.9659 -5.3044 37 1 1.6176 -1.7192 1.3660 38 1 1.9803 1.2077 2.3385 39 1 1.1988 -0.1741 3.2251 40 1 1.8836 0.5327 6.1221 41 1 4.0628 -1.6257 1.2179 42 1 4.0408 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276462030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:38 Heat of formation + Delta-G solvation = 118.586103 kcal Electronic energy + Delta-G solvation = -25657.613681 eV Core-core repulsion = 21960.940665 eV Total energy + Delta-G solvation = -3696.673016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.89609 -40.07215 -38.29765 -37.00886 -34.90593 -32.38552 -31.78115 -30.90329 -30.08795 -28.30871 -27.54513 -24.91219 -24.21201 -23.62750 -22.16933 -21.61979 -20.65024 -20.20662 -19.21461 -18.45472 -17.33219 -16.89297 -16.26770 -16.04619 -15.79086 -15.34480 -15.12697 -14.81019 -14.68371 -14.26187 -13.99701 -13.79636 -13.57945 -13.34980 -13.06589 -12.72652 -12.35300 -12.09862 -11.98655 -11.68955 -11.52114 -11.46799 -11.29561 -10.94834 -10.74975 -10.70653 -10.44840 -10.41050 -10.20332 -9.88375 -9.77577 -9.49639 -9.13512 -8.99795 -8.85058 -7.91212 -6.93485 -5.82184 -3.14676 0.62826 0.68055 1.33560 1.88649 2.27115 2.48848 2.66999 3.13101 3.35018 3.40182 3.42948 3.93912 4.25665 4.40047 4.49483 4.61477 4.81689 4.87685 4.95304 5.04772 5.09138 5.16681 5.30882 5.32431 5.47080 5.55767 5.73177 5.78827 5.90534 5.97905 6.17604 6.24852 6.26736 6.35321 6.47708 6.54429 6.54543 6.69990 7.16389 7.29221 7.43549 7.46185 7.50922 7.93100 8.12020 8.99568 9.65704 10.54072 11.35044 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002191 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.286436 B =12773.649107 C =13320.990948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.088 0.912 4 N -0.715 5.715 5 C 0.511 3.489 6 O -0.530 6.530 7 C -0.087 4.087 8 C 0.101 3.899 9 C -0.208 4.208 10 S 0.191 5.809 11 C 0.137 3.863 12 N -0.462 5.462 13 C 0.016 3.984 14 C -0.052 4.052 15 N -0.395 5.395 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.612 5.612 19 C -0.224 4.224 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.125 3.875 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.196 0.804 35 H 0.186 0.814 36 H 0.180 0.820 37 H 0.089 0.911 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.040 0.960 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.130 -4.448 -23.053 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.047 3.953 3 H 0.106 0.894 4 N -0.365 5.365 5 C 0.295 3.705 6 O -0.406 6.406 7 C -0.130 4.130 8 C -0.010 4.010 9 C -0.345 4.345 10 S 0.443 5.557 11 C -0.229 4.229 12 N -0.185 5.185 13 C -0.133 4.133 14 C -0.185 4.185 15 N -0.074 5.074 16 C -0.167 4.167 17 C 0.049 3.951 18 N -0.338 5.338 19 C -0.352 4.352 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.001 4.001 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.126 0.874 33 H 0.144 0.856 34 H 0.213 0.787 35 H 0.203 0.797 36 H 0.198 0.802 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.603 -2.112 -24.024 24.124 hybrid contribution -0.167 -2.053 2.428 3.184 sum -0.770 -4.165 -21.596 22.007 Atomic orbital electron populations 1.22104 0.95392 1.01776 1.02329 1.21149 0.93814 0.97483 0.82898 0.89420 1.46099 1.66765 1.14076 1.09606 1.20183 0.78515 0.87502 0.84258 1.90771 1.49452 1.15668 1.84737 1.20534 1.05862 0.96840 0.89749 1.18214 0.87414 1.01866 0.93463 1.24805 1.03940 1.01588 1.04135 1.84714 1.04071 1.42221 1.24738 1.26277 1.03584 0.99330 0.93691 1.70597 0.99395 1.22231 1.26299 1.22395 0.99881 0.95643 0.95428 1.22773 0.85398 1.06776 1.03527 1.43708 1.14003 1.29252 1.20459 1.23870 0.97601 1.00760 0.94484 1.22190 0.89722 0.93845 0.89300 1.45942 1.16421 1.71763 0.99649 1.19058 0.98497 1.34835 0.82765 0.90235 1.24798 0.97077 1.01048 0.97559 1.69816 1.15402 1.47201 1.24366 0.86051 0.78933 0.77391 0.83401 1.20471 1.21695 1.21662 1.22532 0.92993 0.97611 0.86939 0.92960 0.92732 0.90979 0.76644 0.87380 0.85641 0.78707 0.79740 0.80248 0.89288 0.95458 0.90669 0.93622 0.94155 0.95097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.44 37.16 0.35 -1.73 16 2 C 0.15 2.12 2.29 -67.93 -0.16 1.97 16 3 H 0.09 1.47 7.48 -51.93 -0.39 1.08 16 4 N -0.71 -7.65 4.94 -53.80 -0.27 -7.92 16 5 C 0.51 5.80 7.79 -10.99 -0.09 5.72 16 6 O -0.53 -8.50 15.70 5.56 0.09 -8.41 16 7 C -0.09 -0.64 6.00 -29.03 -0.17 -0.81 16 8 C 0.10 1.00 5.24 -81.75 -0.43 0.57 16 9 C -0.21 -1.85 10.81 29.04 0.31 -1.54 16 10 S 0.19 1.89 23.37 -107.50 -2.51 -0.62 16 11 C 0.14 1.76 8.93 -88.71 -0.79 0.97 16 12 N -0.46 -6.26 11.32 -13.56 -0.15 -6.42 16 13 C 0.02 0.17 11.82 -18.04 -0.21 -0.04 16 14 C -0.05 -0.52 11.97 -15.71 -0.19 -0.70 16 15 N -0.40 -4.53 3.19 -59.54 -0.19 -4.72 16 16 C -0.15 -2.44 3.36 -89.70 -0.30 -2.75 16 17 C 0.18 3.93 6.98 -2.98 -0.02 3.91 16 18 N -0.61 -15.20 3.70 -177.92 -0.66 -15.86 16 19 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -26.91 11.38 55.49 0.63 -26.28 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.13 2.37 8.37 -2.97 -0.02 2.35 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 31 H 0.40 3.16 8.60 -40.82 -0.35 2.81 16 32 H 0.11 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.13 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.19 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 39 H 0.08 1.87 7.16 -51.93 -0.37 1.49 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -36.25 370.30 -10.20 -46.45 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.72 Total: 0.15 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -1.98 Total: 1.24 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.64 Total: -61.19 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.51 Total: -0.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.25 -10.20 -46.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276462030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.040 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds