Wall clock time and date at job start Tue Mar 31 2020 18:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46613 * 2 1 4 4 N 1.46498 * 109.47391 * 240.00093 * 2 1 3 5 5 C 1.34778 * 120.00108 * 84.99714 * 4 2 1 6 6 O 1.21282 * 120.00112 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00004 * 180.02562 * 5 4 2 8 8 C 1.50702 * 109.47286 * 180.02562 * 7 5 4 9 9 C 1.30905 * 121.83905 * 84.97577 * 8 7 5 10 10 S 1.75781 * 109.81935 * 180.02562 * 9 8 7 11 11 C 1.76247 * 90.70000 * 0.02562 * 10 9 8 12 12 N 1.32354 * 141.95515 * 180.02562 * 11 10 9 13 13 C 1.33874 * 109.13818 * 179.97438 * 12 11 10 14 14 C 1.34334 * 108.38765 * 359.97438 * 13 12 11 15 15 N 1.35149 * 109.22168 * 359.97438 * 11 10 9 16 16 C 1.53002 * 109.47087 * 119.99517 * 2 1 3 17 17 C 1.53938 * 113.74471 * 281.68053 * 16 2 1 18 18 N 1.47575 * 86.12056 * 222.04854 * 17 16 2 19 19 C 1.36934 * 134.49747 * 204.64508 * 18 17 16 20 20 H 1.08000 * 120.00189 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99824 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99859 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00135 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46878 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47378 * 119.99734 * 23 21 19 26 26 H 1.48501 * 109.47081 * 239.99989 * 23 21 19 27 27 C 1.47578 * 91.01495 * 24.64070 * 18 17 16 28 28 H 1.09002 * 109.46851 * 60.02842 * 1 2 3 29 29 H 1.08992 * 109.46817 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47050 * 300.03331 * 1 2 3 31 31 H 0.97000 * 119.99623 * 265.00254 * 4 2 1 32 32 H 1.09008 * 109.47028 * 59.99886 * 7 5 4 33 33 H 1.09001 * 109.46632 * 300.00267 * 7 5 4 34 34 H 1.08002 * 125.08850 * 0.02562 * 9 8 7 35 35 H 1.08001 * 125.80879 * 180.02562 * 13 12 11 36 36 H 1.08001 * 126.43955 * 180.02562 * 14 13 12 37 37 H 1.09001 * 112.94176 * 53.41705 * 16 2 1 38 38 H 1.09001 * 113.77023 * 336.35041 * 17 16 2 39 39 H 1.09005 * 113.77151 * 107.74461 * 17 16 2 40 40 H 0.96997 * 119.99452 * 180.02562 * 22 21 19 41 41 H 1.09000 * 113.77549 * 221.06243 * 27 18 17 42 42 H 1.09005 * 113.87437 * 89.67186 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1586 -2.4115 7 6 2.6490 -0.7288 -3.5877 8 6 2.7004 0.2397 -4.7412 9 6 3.7314 1.0211 -4.9414 10 16 3.4581 2.0154 -6.3650 11 6 1.8803 1.2692 -6.6099 12 7 0.8294 1.2932 -7.4141 13 6 -0.0728 0.4025 -6.9842 14 6 0.4150 -0.1987 -5.8864 15 7 1.6666 0.3519 -5.6406 16 6 2.0400 -0.7212 1.2493 17 6 1.9777 0.1342 2.5276 18 7 3.3098 -0.4177 2.8417 19 6 4.0195 -0.6142 3.9962 20 1 5.0065 -1.0506 3.9557 21 6 3.4700 -0.2526 5.2186 22 7 2.2673 0.2797 5.2679 23 14 4.4383 -0.5200 6.7936 24 1 5.7535 -1.1283 6.4688 25 1 4.6496 0.7839 7.4723 26 1 3.6814 -1.4286 7.6917 27 6 3.5702 -0.6729 1.4116 28 1 -0.3633 0.5134 -0.8903 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5144 0.8897 31 1 2.2491 -1.6317 -1.1525 32 1 1.9761 -1.5506 -3.8325 33 1 3.6481 -1.1213 -3.3985 34 1 4.6172 1.0505 -4.3243 35 1 -1.0298 0.2009 -7.4425 36 1 -0.0738 -0.9659 -5.3044 37 1 1.6176 -1.7192 1.3660 38 1 1.9803 1.2077 2.3385 39 1 1.1988 -0.1741 3.2251 40 1 1.8836 0.5327 6.1221 41 1 4.0628 -1.6257 1.2179 42 1 4.0408 0.1624 0.8930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276462030.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:37 Heat of formation + Delta-G solvation = 94.508489 kcal Electronic energy + Delta-G solvation = -25658.657764 eV Core-core repulsion = 21960.940665 eV Total energy + Delta-G solvation = -3697.717100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.64780 -41.09605 -39.73302 -37.82513 -36.13834 -34.16526 -32.79135 -31.80730 -30.98950 -29.38295 -28.97892 -26.54737 -25.73544 -24.55638 -23.16676 -22.69919 -21.63896 -21.15218 -20.55319 -19.20883 -18.77812 -18.20293 -17.37806 -16.92571 -16.81741 -16.57011 -16.05736 -15.89766 -15.78486 -15.48957 -15.33102 -14.83518 -14.74842 -14.39629 -14.09619 -13.74417 -13.56896 -13.28580 -13.11573 -13.05664 -12.97137 -12.76041 -12.69879 -12.35950 -12.21074 -11.98914 -11.80448 -11.58352 -11.48511 -11.27623 -11.21009 -10.89481 -10.87849 -10.04108 -9.88072 -8.91945 -8.66766 -7.91260 -5.24481 -0.11398 -0.04808 0.64265 1.12288 1.45409 1.46368 1.56401 1.58220 1.65174 1.88769 2.24631 2.47062 3.28364 3.29821 3.40467 3.55298 3.66273 3.90899 3.98661 4.00964 4.22258 4.28312 4.33473 4.42371 4.46175 4.56753 4.58480 4.65696 4.79292 4.84108 4.87710 4.97025 5.07057 5.12442 5.25698 5.29885 5.51878 5.53230 5.56298 5.66762 5.84345 5.94628 6.61318 6.68601 6.92098 7.30176 7.61131 8.56443 9.25929 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.027681 B = 0.002191 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.286436 B =12773.649107 C =13320.990948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.165 3.835 3 H 0.058 0.942 4 N -0.702 5.702 5 C 0.513 3.487 6 O -0.581 6.581 7 C -0.074 4.074 8 C 0.081 3.919 9 C -0.203 4.203 10 S 0.190 5.810 11 C 0.101 3.899 12 N -0.500 5.500 13 C -0.001 4.001 14 C -0.051 4.051 15 N -0.400 5.400 16 C -0.107 4.107 17 C 0.167 3.833 18 N -0.645 5.645 19 C -0.232 4.232 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.955 5.955 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.291 1.291 27 C 0.129 3.871 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.419 0.581 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.223 0.777 35 H 0.211 0.789 36 H 0.214 0.786 37 H 0.107 0.893 38 H 0.007 0.993 39 H 0.044 0.956 40 H 0.248 0.752 41 H 0.066 0.934 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -7.002 -23.825 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.059 3.941 3 H 0.076 0.924 4 N -0.354 5.354 5 C 0.299 3.701 6 O -0.461 6.461 7 C -0.116 4.116 8 C -0.029 4.029 9 C -0.340 4.340 10 S 0.441 5.559 11 C -0.264 4.264 12 N -0.225 5.225 13 C -0.150 4.150 14 C -0.183 4.183 15 N -0.079 5.079 16 C -0.127 4.127 17 C 0.041 3.959 18 N -0.371 5.371 19 C -0.361 4.361 20 H 0.103 0.897 21 C -0.263 4.263 22 N -0.604 5.604 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.218 1.218 27 C 0.004 3.996 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.155 0.845 33 H 0.182 0.818 34 H 0.239 0.761 35 H 0.228 0.772 36 H 0.231 0.769 37 H 0.125 0.875 38 H 0.025 0.975 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.085 0.915 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.399 -4.719 -24.837 25.285 hybrid contribution -0.462 -1.219 2.606 2.914 sum -0.062 -5.938 -22.231 23.010 Atomic orbital electron populations 1.22031 0.94512 1.02945 1.01484 1.20680 0.94333 0.95852 0.83265 0.92399 1.45834 1.66374 1.14821 1.08367 1.20837 0.77240 0.86889 0.85086 1.90769 1.51606 1.18173 1.85539 1.20607 1.08553 0.96193 0.86259 1.18664 0.87173 1.02960 0.94112 1.25255 1.04781 1.00477 1.03497 1.84628 1.03104 1.42558 1.25581 1.26666 1.04471 1.00672 0.94599 1.70525 1.00526 1.23764 1.27663 1.22969 1.00619 0.95342 0.96091 1.23385 0.84849 1.06767 1.03324 1.43969 1.14644 1.28878 1.20374 1.23438 0.96179 1.00258 0.92793 1.22100 0.88327 0.93614 0.91824 1.46395 1.17377 1.71941 1.01418 1.19473 0.98769 1.33690 0.84128 0.89695 1.25645 0.98165 1.01738 1.00776 1.70009 1.17007 1.48869 1.24515 0.85023 0.78214 0.76787 0.79385 1.18751 1.22340 1.21757 1.22695 0.94660 0.98687 0.83517 0.93326 0.90485 0.92379 0.74386 0.84469 0.81785 0.76083 0.77215 0.76947 0.87484 0.97477 0.93800 0.94321 0.91533 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.44 71.98 0.68 -3.07 16 2 C 0.16 4.34 2.29 44.99 0.10 4.44 16 3 H 0.06 1.93 7.48 -2.39 -0.02 1.91 16 4 N -0.70 -12.50 4.94 -442.52 -2.19 -14.68 16 5 C 0.51 10.01 7.79 87.66 0.68 10.69 16 6 O -0.58 -17.81 15.70 -3.03 -0.05 -17.86 16 7 C -0.07 -0.76 6.00 29.10 0.17 -0.58 16 8 C 0.08 1.38 5.24 41.73 0.22 1.60 16 9 C -0.20 -3.20 10.81 67.88 0.73 -2.47 16 10 S 0.19 3.69 23.37 -56.49 -1.32 2.37 16 11 C 0.10 2.57 8.93 179.68 1.60 4.17 16 12 N -0.50 -13.66 11.32 -196.80 -2.23 -15.89 16 13 C 0.00 -0.02 11.82 83.49 0.99 0.96 16 14 C -0.05 -0.90 11.97 82.68 0.99 0.09 16 15 N -0.40 -8.48 3.19 -342.29 -1.09 -9.57 16 16 C -0.11 -3.36 3.36 -10.13 -0.03 -3.39 16 17 C 0.17 7.64 6.98 86.48 0.60 8.24 16 18 N -0.64 -31.83 3.70 -716.82 -2.65 -34.49 16 19 C -0.23 -12.73 10.70 84.03 0.90 -11.83 16 20 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.95 -57.31 11.38 21.65 0.25 -57.06 16 23 Si 0.98 45.13 29.55 68.60 2.03 47.15 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 27 C 0.13 4.59 8.37 86.48 0.72 5.31 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.59 8.09 -2.39 -0.02 1.58 16 31 H 0.42 4.48 8.60 -92.71 -0.80 3.68 16 32 H 0.14 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.16 0.46 8.13 -2.39 -0.02 0.44 16 34 H 0.22 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.01 0.36 8.03 -2.39 -0.02 0.34 16 39 H 0.04 2.26 7.16 -2.38 -0.02 2.24 16 40 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.03 1.21 8.10 -2.38 -0.02 1.19 16 Total: -1.00 -82.90 370.30 1.83 -81.07 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.25 Total: 8.32 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 8.83 Total: 10.65 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -7.91 Total: -131.69 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.05 Total: -17.86 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.32 Total: 2.37 kcal Total: -82.90 1.83 -81.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276462030.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.577 kcal (2) G-P(sol) polarization free energy of solvation -82.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds