Wall clock time and date at job start Tue Mar 31 2020 18:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47365 * 2 1 4 4 N 1.46497 * 109.47015 * 120.00440 * 2 1 3 5 5 C 1.34778 * 119.99735 * 274.99713 * 4 2 1 6 6 O 1.21273 * 120.00272 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99827 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47162 * 180.02562 * 7 5 4 9 9 C 1.30910 * 121.83855 * 85.02724 * 8 7 5 10 10 S 1.75784 * 109.82291 * 180.02562 * 9 8 7 11 11 C 1.76248 * 90.69694 * 359.97438 * 10 9 8 12 12 N 1.32356 * 141.95480 * 180.02562 * 11 10 9 13 13 C 1.33874 * 109.13955 * 179.97438 * 12 11 10 14 14 C 1.34337 * 108.38789 * 359.97438 * 13 12 11 15 15 N 1.35161 * 109.22429 * 359.73952 * 11 10 9 16 16 C 1.53007 * 109.47267 * 240.00142 * 2 1 3 17 17 C 1.53497 * 114.20425 * 64.99908 * 16 2 1 18 18 N 1.47062 * 87.98453 * 220.14915 * 17 16 2 19 19 C 1.36943 * 136.05579 * 207.08745 * 18 17 16 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27778 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 C 1.47067 * 87.88602 * 27.34481 * 18 17 16 28 28 H 1.08999 * 109.46873 * 59.99730 * 1 2 3 29 29 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47196 * 299.99756 * 1 2 3 31 31 H 0.96998 * 120.00390 * 95.00276 * 4 2 1 32 32 H 1.08995 * 109.47442 * 300.00245 * 7 5 4 33 33 H 1.09005 * 109.47515 * 60.00301 * 7 5 4 34 34 H 1.08000 * 125.09142 * 0.03819 * 9 8 7 35 35 H 1.07997 * 125.80611 * 180.02562 * 13 12 11 36 36 H 1.07998 * 126.43806 * 180.02562 * 14 13 12 37 37 H 1.08994 * 113.28303 * 198.06756 * 16 2 1 38 38 H 1.09000 * 113.46436 * 105.36543 * 17 16 2 39 39 H 1.08997 * 113.51966 * 334.94328 * 17 16 2 40 40 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 41 41 H 1.08994 * 113.46653 * 87.43736 * 27 18 17 42 42 H 1.08996 * 113.46465 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1582 2.4117 7 6 2.6488 -0.7290 3.5877 8 6 2.6991 0.2392 4.7414 9 6 1.6485 0.4854 5.4826 10 16 2.0589 1.6555 6.7286 11 6 3.7159 1.7397 6.1339 12 7 4.8771 2.3317 6.3640 13 6 5.7738 1.9028 5.4673 14 6 5.1703 1.0212 4.6529 15 7 3.8524 0.9078 5.0774 16 6 2.0401 -0.7212 -1.2493 17 6 1.6920 -0.0176 -2.5684 18 7 1.4191 -1.3434 -3.1433 19 6 1.4517 -1.9017 -4.3934 20 1 1.7373 -1.3024 -5.2452 21 6 1.1115 -3.2363 -4.5664 22 7 0.7629 -3.9666 -3.5284 23 14 1.1484 -3.9959 -6.2726 24 1 2.4960 -4.5630 -6.5328 25 1 0.1324 -5.0757 -6.3558 26 1 0.8463 -2.9528 -7.2855 27 6 1.0895 -1.8040 -1.7861 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 1.1525 32 1 1.9759 -1.5507 3.8325 33 1 3.6480 -1.1216 3.3986 34 1 0.6752 0.0367 5.3488 35 1 6.8069 2.2121 5.4091 36 1 5.6253 0.4961 3.8260 37 1 3.0811 -1.0346 -1.1710 38 1 2.5412 0.4883 -3.0276 39 1 0.8085 0.6173 -2.5027 40 1 0.5255 -4.8993 -3.6493 41 1 0.0470 -1.6404 -1.5134 42 1 1.4255 -2.8200 -1.5791 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276462035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:43 Heat of formation + Delta-G solvation = 128.023199 kcal Electronic energy + Delta-G solvation = -25639.918226 eV Core-core repulsion = 21943.654433 eV Total energy + Delta-G solvation = -3696.263793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.88676 -40.11587 -38.60340 -37.02672 -34.85485 -32.46307 -31.74957 -30.84916 -30.00167 -28.30310 -27.39397 -24.93884 -24.53157 -23.65521 -22.19211 -21.75274 -20.69975 -20.12441 -18.81319 -18.38583 -17.37355 -16.81843 -16.30041 -16.05891 -15.65122 -15.42728 -15.24527 -14.98357 -14.60956 -14.49796 -13.91280 -13.85881 -13.66790 -13.20207 -13.06356 -12.67224 -12.35766 -12.07681 -11.97582 -11.81470 -11.54533 -11.45315 -11.03099 -10.95769 -10.70848 -10.69992 -10.51885 -10.43971 -10.14272 -9.90024 -9.78474 -9.32033 -9.13175 -8.98523 -8.85723 -7.90861 -6.93143 -5.84892 -3.16504 0.62972 0.67950 1.33131 1.89192 2.28173 2.48528 2.68188 3.14461 3.33785 3.39012 3.40619 3.94900 4.27063 4.38653 4.50948 4.63814 4.84421 4.89186 4.95362 5.05374 5.14627 5.18029 5.29197 5.32557 5.48558 5.60003 5.68506 5.79799 5.93739 6.03069 6.14412 6.26126 6.28836 6.45904 6.53393 6.55444 6.59723 6.67506 7.11940 7.27037 7.45000 7.46545 7.47698 7.90429 8.11923 8.96766 9.62953 10.56494 11.32827 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.002130 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.669936 B =13142.690615 C =13433.972577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.157 3.843 3 H 0.082 0.918 4 N -0.714 5.714 5 C 0.512 3.488 6 O -0.533 6.533 7 C -0.088 4.088 8 C 0.104 3.896 9 C -0.209 4.209 10 S 0.189 5.811 11 C 0.137 3.863 12 N -0.461 5.461 13 C 0.016 3.984 14 C -0.050 4.050 15 N -0.396 5.396 16 C -0.157 4.157 17 C 0.127 3.873 18 N -0.610 5.610 19 C -0.217 4.217 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.155 3.845 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.403 0.597 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.195 0.805 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.253 0.747 41 H 0.038 0.962 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.037 5.745 20.180 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.100 0.900 4 N -0.365 5.365 5 C 0.296 3.704 6 O -0.410 6.410 7 C -0.131 4.131 8 C -0.007 4.007 9 C -0.346 4.346 10 S 0.440 5.560 11 C -0.229 4.229 12 N -0.185 5.185 13 C -0.134 4.134 14 C -0.183 4.183 15 N -0.075 5.075 16 C -0.177 4.177 17 C 0.000 4.000 18 N -0.336 5.336 19 C -0.344 4.344 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.030 3.970 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.238 0.762 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.212 0.788 35 H 0.203 0.797 36 H 0.199 0.801 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.206 7.467 21.558 23.039 hybrid contribution 0.661 -2.158 -2.849 3.635 sum 3.868 5.308 18.710 19.829 Atomic orbital electron populations 1.22282 0.95170 1.02770 1.01830 1.20924 0.94183 0.96741 0.82909 0.89985 1.46120 1.66534 1.14303 1.09536 1.20182 0.78444 0.87442 0.84305 1.90753 1.49774 1.15693 1.84775 1.20543 1.05566 0.96974 0.90027 1.18225 0.84638 0.98843 0.99008 1.24776 1.02558 1.05958 1.01351 1.84677 0.93729 1.45477 1.32082 1.26264 1.02168 0.99224 0.95259 1.70595 0.96838 1.24845 1.26217 1.22401 0.99843 0.97682 0.93424 1.22809 0.81351 1.08253 1.05898 1.43718 1.08770 1.31018 1.23994 1.23716 1.01003 1.00787 0.92199 1.22371 0.97337 0.90251 0.90011 1.45520 1.78715 1.05680 1.03669 1.18946 1.39336 0.93179 0.82942 0.90127 1.24784 1.01657 0.96398 0.97651 1.69808 1.51464 1.07390 1.28195 0.86105 0.77394 0.78887 0.83297 1.21488 1.21597 1.20646 1.22388 0.94566 0.96486 0.83575 0.91248 0.91314 0.93117 0.76233 0.85596 0.87243 0.78778 0.79702 0.80150 0.89018 0.94226 0.94627 0.93662 0.94496 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.22 37.16 0.31 -2.00 16 2 C 0.16 2.20 2.76 -67.93 -0.19 2.01 16 3 H 0.08 1.25 7.58 -51.93 -0.39 0.85 16 4 N -0.71 -8.04 5.08 -53.80 -0.27 -8.31 16 5 C 0.51 5.86 7.79 -10.99 -0.09 5.77 16 6 O -0.53 -8.36 15.70 5.56 0.09 -8.27 16 7 C -0.09 -0.67 6.00 -29.03 -0.17 -0.85 16 8 C 0.10 1.03 5.24 -81.75 -0.43 0.60 16 9 C -0.21 -1.82 10.81 29.04 0.31 -1.50 16 10 S 0.19 1.83 23.37 -107.50 -2.51 -0.68 16 11 C 0.14 1.75 8.93 -88.70 -0.79 0.96 16 12 N -0.46 -6.30 11.32 -13.55 -0.15 -6.45 16 13 C 0.02 0.17 11.82 -18.04 -0.21 -0.04 16 14 C -0.05 -0.52 11.97 -15.71 -0.19 -0.71 16 15 N -0.40 -4.60 3.19 -59.54 -0.19 -4.79 16 16 C -0.16 -2.63 4.14 -89.97 -0.37 -3.00 16 17 C 0.13 2.48 8.10 -8.51 -0.07 2.41 16 18 N -0.61 -15.07 3.78 -184.61 -0.70 -15.76 16 19 C -0.22 -5.94 10.75 -15.06 -0.16 -6.10 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -26.38 11.50 55.49 0.64 -25.74 16 23 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.16 3.31 6.54 -8.37 -0.05 3.25 16 28 H 0.07 1.03 6.77 -51.93 -0.35 0.68 16 29 H 0.07 1.00 6.33 -51.93 -0.33 0.67 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.40 3.75 8.60 -40.82 -0.35 3.40 16 32 H 0.13 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.20 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.19 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.04 0.79 5.45 -51.93 -0.28 0.51 16 42 H 0.07 1.62 7.12 -51.93 -0.37 1.25 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -35.55 363.00 -10.21 -45.76 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.36 Total: 1.70 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.20 Total: 0.49 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.68 Total: -61.06 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.51 Total: -0.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.55 -10.21 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276462035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.784 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds