Wall clock time and date at job start Tue Mar 31 2020 18:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47365 * 2 1 4 4 N 1.46497 * 109.47015 * 120.00440 * 2 1 3 5 5 C 1.34778 * 119.99735 * 274.99713 * 4 2 1 6 6 O 1.21273 * 120.00272 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99827 * 179.97438 * 5 4 2 8 8 C 1.50702 * 109.47162 * 180.02562 * 7 5 4 9 9 C 1.30910 * 121.83855 * 85.02724 * 8 7 5 10 10 S 1.75784 * 109.82291 * 180.02562 * 9 8 7 11 11 C 1.76248 * 90.69694 * 359.97438 * 10 9 8 12 12 N 1.32356 * 141.95480 * 180.02562 * 11 10 9 13 13 C 1.33874 * 109.13955 * 179.97438 * 12 11 10 14 14 C 1.34337 * 108.38789 * 359.97438 * 13 12 11 15 15 N 1.35161 * 109.22429 * 359.73952 * 11 10 9 16 16 C 1.53007 * 109.47267 * 240.00142 * 2 1 3 17 17 C 1.53497 * 114.20425 * 64.99908 * 16 2 1 18 18 N 1.47062 * 87.98453 * 220.14915 * 17 16 2 19 19 C 1.36943 * 136.05579 * 207.08745 * 18 17 16 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99622 * 180.27778 * 19 18 17 22 22 N 1.31614 * 120.00467 * 359.72375 * 21 19 18 23 23 Si 1.86801 * 119.99700 * 179.72266 * 21 19 18 24 24 H 1.48501 * 109.46896 * 89.99850 * 23 21 19 25 25 H 1.48499 * 109.47039 * 210.00011 * 23 21 19 26 26 H 1.48501 * 109.47275 * 329.99811 * 23 21 19 27 27 C 1.47067 * 87.88602 * 27.34481 * 18 17 16 28 28 H 1.08999 * 109.46873 * 59.99730 * 1 2 3 29 29 H 1.08996 * 109.47327 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47196 * 299.99756 * 1 2 3 31 31 H 0.96998 * 120.00390 * 95.00276 * 4 2 1 32 32 H 1.08995 * 109.47442 * 300.00245 * 7 5 4 33 33 H 1.09005 * 109.47515 * 60.00301 * 7 5 4 34 34 H 1.08000 * 125.09142 * 0.03819 * 9 8 7 35 35 H 1.07997 * 125.80611 * 180.02562 * 13 12 11 36 36 H 1.07998 * 126.43806 * 180.02562 * 14 13 12 37 37 H 1.08994 * 113.28303 * 198.06756 * 16 2 1 38 38 H 1.09000 * 113.46436 * 105.36543 * 17 16 2 39 39 H 1.08997 * 113.51966 * 334.94328 * 17 16 2 40 40 H 0.96995 * 120.00147 * 180.02562 * 22 21 19 41 41 H 1.08994 * 113.46653 * 87.43736 * 27 18 17 42 42 H 1.08996 * 113.46465 * 217.87717 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8582 1.1582 2.4117 7 6 2.6488 -0.7290 3.5877 8 6 2.6991 0.2392 4.7414 9 6 1.6485 0.4854 5.4826 10 16 2.0589 1.6555 6.7286 11 6 3.7159 1.7397 6.1339 12 7 4.8771 2.3317 6.3640 13 6 5.7738 1.9028 5.4673 14 6 5.1703 1.0212 4.6529 15 7 3.8524 0.9078 5.0774 16 6 2.0401 -0.7212 -1.2493 17 6 1.6920 -0.0176 -2.5684 18 7 1.4191 -1.3434 -3.1433 19 6 1.4517 -1.9017 -4.3934 20 1 1.7373 -1.3024 -5.2452 21 6 1.1115 -3.2363 -4.5664 22 7 0.7629 -3.9666 -3.5284 23 14 1.1484 -3.9959 -6.2726 24 1 2.4960 -4.5630 -6.5328 25 1 0.1324 -5.0757 -6.3558 26 1 0.8463 -2.9528 -7.2855 27 6 1.0895 -1.8040 -1.7861 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.2490 -1.6318 1.1525 32 1 1.9759 -1.5507 3.8325 33 1 3.6480 -1.1216 3.3986 34 1 0.6752 0.0367 5.3488 35 1 6.8069 2.2121 5.4091 36 1 5.6253 0.4961 3.8260 37 1 3.0811 -1.0346 -1.1710 38 1 2.5412 0.4883 -3.0276 39 1 0.8085 0.6173 -2.5027 40 1 0.5255 -4.8993 -3.6493 41 1 0.0470 -1.6404 -1.5134 42 1 1.4255 -2.8200 -1.5791 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276462035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:42 Heat of formation + Delta-G solvation = 104.803130 kcal Electronic energy + Delta-G solvation = -25640.925123 eV Core-core repulsion = 21943.654433 eV Total energy + Delta-G solvation = -3697.270691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.64932 -41.19571 -39.99004 -37.83175 -36.08681 -34.22882 -32.73760 -31.78293 -30.98790 -29.29102 -28.88104 -26.52364 -26.05379 -24.57775 -23.38734 -22.77189 -21.67950 -20.95676 -20.14795 -19.19283 -18.74370 -18.24262 -17.38293 -16.93133 -16.87476 -16.46639 -16.24584 -16.00264 -15.83417 -15.64900 -15.36883 -14.93607 -14.44090 -14.39349 -14.17904 -13.77142 -13.57643 -13.31981 -13.24887 -13.03474 -12.79634 -12.75312 -12.66704 -12.21102 -12.20388 -12.08669 -11.82438 -11.52417 -11.48568 -11.28223 -11.07379 -10.87909 -10.80597 -10.06298 -9.88378 -8.87186 -8.66160 -7.91130 -5.22824 -0.11152 -0.05039 0.64058 1.12049 1.46433 1.47495 1.55893 1.57665 1.63504 1.88152 2.24538 2.47427 3.28046 3.31255 3.45340 3.55178 3.67685 3.82438 3.97607 4.09073 4.21278 4.22885 4.33301 4.41642 4.43295 4.54930 4.56212 4.65224 4.74907 4.77146 4.98960 5.02557 5.04960 5.09492 5.25032 5.36235 5.49840 5.51725 5.58077 5.69105 5.83789 5.96445 6.58218 6.67892 6.93263 7.25172 7.60436 8.61924 9.26295 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.028115 B = 0.002130 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.669936 B =13142.690615 C =13433.972577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.170 3.830 3 H 0.077 0.923 4 N -0.707 5.707 5 C 0.516 3.484 6 O -0.577 6.577 7 C -0.077 4.077 8 C 0.080 3.920 9 C -0.201 4.201 10 S 0.196 5.804 11 C 0.102 3.898 12 N -0.500 5.500 13 C 0.000 4.000 14 C -0.053 4.053 15 N -0.400 5.400 16 C -0.119 4.119 17 C 0.122 3.878 18 N -0.645 5.645 19 C -0.230 4.230 20 H 0.080 0.920 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.976 3.024 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.157 3.843 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.415 0.585 32 H 0.164 0.836 33 H 0.132 0.868 34 H 0.225 0.775 35 H 0.211 0.789 36 H 0.210 0.790 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.249 0.751 41 H 0.036 0.964 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 5.227 20.377 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.064 3.936 3 H 0.095 0.905 4 N -0.359 5.359 5 C 0.302 3.698 6 O -0.456 6.456 7 C -0.119 4.119 8 C -0.030 4.030 9 C -0.337 4.337 10 S 0.447 5.553 11 C -0.264 4.264 12 N -0.224 5.224 13 C -0.149 4.149 14 C -0.186 4.186 15 N -0.080 5.080 16 C -0.139 4.139 17 C -0.003 4.003 18 N -0.371 5.371 19 C -0.358 4.358 20 H 0.098 0.902 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.805 3.195 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.197 1.197 27 C 0.032 3.968 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.252 0.748 32 H 0.181 0.819 33 H 0.150 0.850 34 H 0.242 0.758 35 H 0.227 0.773 36 H 0.227 0.773 37 H 0.115 0.885 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.453 6.952 21.770 23.113 hybrid contribution 0.577 -1.918 -2.879 3.508 sum 4.030 5.033 18.891 19.961 Atomic orbital electron populations 1.22190 0.95143 1.02355 1.01674 1.20573 0.94006 0.96177 0.82830 0.90451 1.45964 1.66299 1.14820 1.08801 1.20755 0.77217 0.86871 0.84925 1.90747 1.51672 1.17759 1.85450 1.20602 1.07571 0.96711 0.87028 1.18636 0.84398 0.99773 1.00190 1.25260 1.03519 1.04823 1.00140 1.84584 0.92416 1.45835 1.32463 1.26722 1.03047 1.00133 0.96460 1.70528 0.97919 1.26188 1.27791 1.22951 1.00820 0.97945 0.93163 1.23362 0.81044 1.07949 1.06225 1.43969 1.09540 1.30792 1.23650 1.23334 1.00139 0.98006 0.92453 1.22561 0.97980 0.88858 0.90951 1.45908 1.79083 1.08284 1.03871 1.19292 1.38502 0.93603 0.84401 0.90172 1.25567 1.02145 0.96961 1.01104 1.69970 1.52731 1.07250 1.29850 0.85112 0.77112 0.77851 0.79450 1.21127 1.22000 1.19733 1.22356 0.95424 0.96241 0.82780 0.92156 0.91779 0.92522 0.74790 0.81851 0.85036 0.75841 0.77262 0.77286 0.88483 0.93537 0.93469 0.94206 0.94597 0.94193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 8.22 71.98 0.59 -3.57 16 2 C 0.17 4.42 2.76 44.99 0.12 4.54 16 3 H 0.08 2.19 7.58 -2.39 -0.02 2.17 16 4 N -0.71 -13.95 5.08 -442.53 -2.25 -16.19 16 5 C 0.52 10.29 7.79 87.66 0.68 10.97 16 6 O -0.58 -16.91 15.70 -3.01 -0.05 -16.95 16 7 C -0.08 -0.89 6.00 29.10 0.17 -0.71 16 8 C 0.08 1.39 5.24 41.73 0.22 1.61 16 9 C -0.20 -3.01 10.81 67.87 0.73 -2.28 16 10 S 0.20 3.63 23.37 -56.49 -1.32 2.31 16 11 C 0.10 2.57 8.93 179.68 1.60 4.18 16 12 N -0.50 -13.73 11.32 -196.80 -2.23 -15.95 16 13 C 0.00 0.00 11.82 83.49 0.99 0.99 16 14 C -0.05 -1.01 11.97 82.68 0.99 -0.02 16 15 N -0.40 -8.70 3.19 -342.27 -1.09 -9.79 16 16 C -0.12 -3.82 4.14 -10.37 -0.04 -3.87 16 17 C 0.12 4.63 8.10 83.18 0.67 5.31 16 18 N -0.65 -31.74 3.78 -737.98 -2.79 -34.53 16 19 C -0.23 -12.61 10.75 84.03 0.90 -11.71 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 22 N -0.95 -54.90 11.50 21.65 0.25 -54.65 16 23 Si 0.98 44.52 29.55 68.60 2.03 46.54 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.16 6.65 6.54 83.27 0.54 7.19 16 28 H 0.06 1.71 6.77 -2.39 -0.02 1.70 16 29 H 0.06 1.77 6.33 -2.39 -0.02 1.76 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.42 6.40 8.60 -92.71 -0.80 5.60 16 32 H 0.16 0.68 8.13 -2.39 -0.02 0.66 16 33 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.23 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.21 2.85 8.06 -2.91 -0.02 2.83 16 36 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 1.71 6.75 -2.39 -0.02 1.69 16 40 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 41 H 0.04 1.54 5.45 -2.39 -0.01 1.52 16 42 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16 Total: -1.00 -78.52 363.00 1.47 -77.05 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.27 Total: 12.63 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 8.65 Total: 9.53 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -8.11 Total: -131.11 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.32 Total: 2.31 kcal Total: -78.52 1.47 -77.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276462035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.852 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds