Wall clock time and date at job start Tue Mar 31 2020 17:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21507 * 120.00039 * 359.97438 * 8 7 6 10 10 C 1.48215 * 120.00109 * 179.97438 * 8 7 6 11 11 N 1.32978 * 120.61076 * 359.71894 * 10 8 7 12 12 C 1.31775 * 120.89889 * 179.79667 * 11 10 8 13 13 N 1.31186 * 122.65612 * 0.47910 * 12 11 10 14 14 C 1.34529 * 121.10283 * 359.77207 * 13 12 11 15 15 C 1.44792 * 130.27582 * 179.97438 * 14 13 12 16 16 C 1.32200 * 114.91181 * 180.02562 * 15 14 13 17 17 S 1.75372 * 111.45397 * 359.97438 * 16 15 14 18 18 C 1.40456 * 120.61448 * 179.97438 * 10 8 7 19 19 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 20 20 C 1.36936 * 120.00314 * 84.99627 * 19 4 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 4 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 35 35 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 36 36 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 37 37 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 38 38 H 1.07998 * 118.67323 * 180.24538 * 12 11 10 39 39 H 1.07996 * 122.54508 * 0.04288 * 15 14 13 40 40 H 1.08008 * 124.27757 * 179.97438 * 16 15 14 41 41 H 0.97000 * 120.00040 * 264.99759 * 19 4 2 42 42 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0433 -4.7526 1.8256 10 6 2.3973 -4.9179 3.7265 11 7 3.2376 -4.3099 4.5587 12 6 3.7636 -4.9552 5.5802 13 7 3.5037 -6.2165 5.8305 14 6 2.6702 -6.9232 5.0459 15 6 2.2480 -8.3054 5.1346 16 6 1.4085 -8.6929 4.1897 17 16 1.0441 -7.3850 3.0796 18 6 2.0847 -6.2690 3.9488 19 7 3.5049 -0.7208 1.2496 20 6 4.1892 0.3542 1.7510 21 1 3.6489 1.2015 2.1467 22 6 5.5773 0.3548 1.7508 23 7 6.2349 1.3904 2.2279 24 14 6.5120 -1.1104 1.0659 25 1 6.7659 -2.0882 2.1543 26 1 5.7067 -1.7561 -0.0017 27 1 7.8062 -0.6517 0.5007 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.4436 -2.1650 1.3388 36 1 1.8183 -2.6511 0.3179 37 1 2.7226 -2.4349 2.9849 38 1 4.4387 -4.4253 6.2357 39 1 2.5924 -8.9692 5.9136 40 1 0.9988 -9.6892 4.1112 41 1 3.9903 -1.4819 0.8946 42 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319916192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:49 Heat of formation + Delta-G solvation = 46.799114 kcal Electronic energy + Delta-G solvation = -26177.546714 eV Core-core repulsion = 22477.760781 eV Total energy + Delta-G solvation = -3699.785934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38069 -39.48994 -37.45754 -36.45940 -34.21736 -33.48738 -33.15358 -30.92870 -30.84889 -28.52534 -26.33477 -25.57675 -25.21371 -23.49507 -22.28049 -21.63623 -20.56409 -19.59367 -18.72612 -18.37573 -17.49411 -17.00816 -15.93669 -15.86384 -15.65817 -15.29013 -14.84477 -14.55714 -14.52448 -14.10996 -13.96483 -13.61883 -13.17783 -13.08720 -12.94081 -12.59639 -12.49538 -12.21654 -11.67326 -11.62960 -11.33553 -11.11184 -11.06887 -10.95567 -10.89803 -10.71231 -10.40205 -10.24245 -10.18383 -10.03449 -9.66679 -9.56812 -9.50429 -9.00519 -8.91281 -8.28392 -7.35413 -5.82185 -3.18458 -0.05691 0.30453 1.06618 1.62876 1.68017 2.71778 2.94657 3.34290 3.37781 3.43316 3.49682 3.57863 3.77405 4.22077 4.37286 4.54529 4.71771 4.95065 5.09293 5.17622 5.20168 5.39720 5.45726 5.54742 5.58119 5.65467 5.69152 5.83827 5.94808 5.99712 6.14137 6.24496 6.34420 6.38617 6.45132 6.53577 6.55403 6.73414 6.97251 7.32000 7.51480 7.74539 7.92686 8.11852 8.35778 9.13207 9.85774 10.04144 11.35379 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003730 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.891881 B = 7504.687232 C = 9028.654225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.065 0.935 6 C 0.106 3.894 7 N -0.684 5.684 8 C 0.559 3.441 9 O -0.529 6.529 10 C 0.192 3.808 11 N -0.476 5.476 12 C 0.300 3.700 13 N -0.478 5.478 14 C 0.166 3.834 15 C -0.122 4.122 16 C -0.184 4.184 17 S 0.211 5.789 18 C -0.230 4.230 19 N -0.746 5.746 20 C -0.241 4.241 21 H 0.095 0.905 22 C 0.011 3.989 23 N -0.930 5.930 24 Si 0.877 3.123 25 H -0.284 1.284 26 H -0.278 1.278 27 H -0.292 1.292 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.423 0.577 38 H 0.211 0.789 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.362 0.638 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 -17.232 3.436 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.083 0.917 6 C -0.018 4.018 7 N -0.335 5.335 8 C 0.341 3.659 9 O -0.406 6.406 10 C 0.032 3.968 11 N -0.192 5.192 12 C 0.008 3.992 13 N -0.193 5.193 14 C 0.020 3.980 15 C -0.152 4.152 16 C -0.322 4.322 17 S 0.474 5.526 18 C -0.351 4.351 19 N -0.389 5.389 20 C -0.371 4.371 21 H 0.113 0.887 22 C -0.185 4.185 23 N -0.577 5.577 24 Si 0.707 3.293 25 H -0.211 1.211 26 H -0.205 1.205 27 H -0.218 1.218 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.262 0.738 38 H 0.227 0.773 39 H 0.176 0.824 40 H 0.198 0.802 41 H 0.195 0.805 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.347 -16.824 2.369 21.003 hybrid contribution 1.643 -1.254 0.583 2.148 sum -10.704 -18.078 2.952 21.216 Atomic orbital electron populations 1.21946 0.96604 1.00943 1.01260 1.21697 0.93781 0.98120 0.99377 1.21825 1.04473 0.94133 0.99260 1.20539 0.85191 0.90863 0.96945 0.91734 1.21981 0.98057 0.93405 0.88311 1.45910 1.47187 1.09866 1.30540 1.17691 0.81851 0.82751 0.83563 1.90763 1.36056 1.67849 1.45899 1.21194 0.92438 0.88824 0.94350 1.68565 1.07791 1.38572 1.04312 1.24918 0.95242 0.86852 0.92143 1.68258 1.13450 1.08776 1.28787 1.20441 0.93227 0.94279 0.90099 1.20493 1.00492 0.92327 1.01910 1.25899 1.01779 1.05086 0.99415 1.84960 1.44136 0.96719 1.26776 1.24329 1.07023 1.00122 1.03676 1.42841 1.00271 1.20901 1.74893 1.19025 0.89260 0.96228 1.32568 0.88683 1.24620 0.96174 0.96935 1.00799 1.69687 1.07087 1.29551 1.51350 0.86683 0.79984 0.83525 0.79091 1.21054 1.20470 1.21849 0.92951 0.93352 0.93101 0.91966 0.89236 0.94934 0.93725 0.90527 0.91308 0.73815 0.77308 0.82447 0.80204 0.80541 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.84 37.16 0.33 -1.63 16 2 C -0.11 -1.73 2.69 -90.62 -0.24 -1.97 16 3 C -0.14 -2.47 8.26 37.16 0.31 -2.17 16 4 C 0.17 3.01 2.18 -67.93 -0.15 2.87 16 5 H 0.06 1.16 8.08 -51.92 -0.42 0.74 16 6 C 0.11 1.65 4.73 -4.04 -0.02 1.63 16 7 N -0.68 -11.09 5.38 -61.13 -0.33 -11.42 16 8 C 0.56 9.12 7.82 -12.16 -0.10 9.03 16 9 O -0.53 -9.11 15.21 5.36 0.08 -9.02 16 10 C 0.19 2.97 6.81 -82.44 -0.56 2.40 16 11 N -0.48 -7.18 9.70 -11.11 -0.11 -7.29 16 12 C 0.30 3.91 12.22 -92.69 -1.13 2.78 16 13 N -0.48 -6.37 10.49 -11.75 -0.12 -6.49 16 14 C 0.17 2.13 7.23 -83.24 -0.60 1.53 16 15 C -0.12 -1.14 10.38 -38.92 -0.40 -1.54 16 16 C -0.18 -1.45 11.03 28.81 0.32 -1.13 16 17 S 0.21 2.35 21.59 -107.50 -2.32 0.03 16 18 C -0.23 -3.19 6.35 -37.89 -0.24 -3.43 16 19 N -0.75 -15.87 4.24 -53.43 -0.23 -16.09 16 20 C -0.24 -6.14 8.05 -15.06 -0.12 -6.26 16 21 H 0.10 2.60 7.63 -52.49 -0.40 2.20 16 22 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 23 N -0.93 -27.80 13.97 55.49 0.78 -27.02 16 24 Si 0.88 21.45 27.74 -169.99 -4.72 16.74 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.53 6.51 56.52 0.37 -6.16 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.08 1.08 6.71 -51.93 -0.35 0.73 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.42 7.25 7.52 -40.82 -0.31 6.94 16 38 H 0.21 2.01 8.06 -52.49 -0.42 1.59 16 39 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.18 0.75 8.06 -52.48 -0.42 0.32 16 41 H 0.36 7.91 5.66 -40.82 -0.23 7.68 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -30.92 360.62 -9.57 -40.49 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.33 Total: 12.33 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -2.71 Total: 2.32 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -0.01 Total: -68.32 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.32 Total: 0.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.92 -9.57 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319916192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.292 kcal (2) G-P(sol) polarization free energy of solvation -30.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds