Wall clock time and date at job start Tue Mar 31 2020 17:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21507 * 120.00039 * 359.97438 * 8 7 6 10 10 C 1.48215 * 120.00109 * 179.97438 * 8 7 6 11 11 N 1.32978 * 120.61076 * 359.71894 * 10 8 7 12 12 C 1.31775 * 120.89889 * 179.79667 * 11 10 8 13 13 N 1.31186 * 122.65612 * 0.47910 * 12 11 10 14 14 C 1.34529 * 121.10283 * 359.77207 * 13 12 11 15 15 C 1.44792 * 130.27582 * 179.97438 * 14 13 12 16 16 C 1.32200 * 114.91181 * 180.02562 * 15 14 13 17 17 S 1.75372 * 111.45397 * 359.97438 * 16 15 14 18 18 C 1.40456 * 120.61448 * 179.97438 * 10 8 7 19 19 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 20 20 C 1.36936 * 120.00314 * 84.99627 * 19 4 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 4 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 35 35 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 36 36 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 37 37 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 38 38 H 1.07998 * 118.67323 * 180.24538 * 12 11 10 39 39 H 1.07996 * 122.54508 * 0.04288 * 15 14 13 40 40 H 1.08008 * 124.27757 * 179.97438 * 16 15 14 41 41 H 0.97000 * 120.00040 * 264.99759 * 19 4 2 42 42 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0433 -4.7526 1.8256 10 6 2.3973 -4.9179 3.7265 11 7 3.2376 -4.3099 4.5587 12 6 3.7636 -4.9552 5.5802 13 7 3.5037 -6.2165 5.8305 14 6 2.6702 -6.9232 5.0459 15 6 2.2480 -8.3054 5.1346 16 6 1.4085 -8.6929 4.1897 17 16 1.0441 -7.3850 3.0796 18 6 2.0847 -6.2690 3.9488 19 7 3.5049 -0.7208 1.2496 20 6 4.1892 0.3542 1.7510 21 1 3.6489 1.2015 2.1467 22 6 5.5773 0.3548 1.7508 23 7 6.2349 1.3904 2.2279 24 14 6.5120 -1.1104 1.0659 25 1 6.7659 -2.0882 2.1543 26 1 5.7067 -1.7561 -0.0017 27 1 7.8062 -0.6517 0.5007 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.4436 -2.1650 1.3388 36 1 1.8183 -2.6511 0.3179 37 1 2.7226 -2.4349 2.9849 38 1 4.4387 -4.4253 6.2357 39 1 2.5924 -8.9692 5.9136 40 1 0.9988 -9.6892 4.1112 41 1 3.9903 -1.4819 0.8946 42 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319916192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:48 Heat of formation + Delta-G solvation = 26.289929 kcal Electronic energy + Delta-G solvation = -26178.436059 eV Core-core repulsion = 22477.760781 eV Total energy + Delta-G solvation = -3700.675279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.38649 -40.72313 -38.90948 -37.31164 -35.51458 -34.95787 -34.51511 -32.70775 -31.83490 -29.96604 -27.61027 -26.77314 -26.15667 -25.10188 -23.51953 -22.82522 -21.73514 -20.99653 -19.91398 -19.55778 -19.04192 -18.02607 -17.22739 -17.10209 -16.74984 -16.69649 -15.97356 -15.78925 -15.70875 -15.41679 -15.07677 -14.96830 -14.72726 -14.41792 -14.30704 -13.90845 -13.51693 -13.45101 -12.98286 -12.95550 -12.85702 -12.51171 -12.48904 -12.34796 -12.12496 -11.99797 -11.89162 -11.73828 -11.57037 -11.47321 -11.33748 -10.89125 -10.61816 -10.51735 -10.23367 -9.27877 -9.15373 -7.95712 -5.27277 -1.04370 -0.66447 0.20177 0.84328 0.86647 1.37423 1.38769 1.44366 1.58254 1.77791 2.50403 2.54477 2.61669 2.77302 3.18853 3.35596 3.39298 3.56104 3.80246 3.90870 4.05566 4.23120 4.27375 4.40412 4.52329 4.60332 4.66914 4.74987 4.90211 4.90524 4.95702 5.01549 5.04620 5.14132 5.22093 5.26086 5.40527 5.48457 5.62551 5.77340 5.87073 6.25303 6.27430 6.69831 6.85299 7.12588 7.86997 8.04722 9.25473 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.003730 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.891881 B = 7504.687232 C = 9028.654225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.174 3.826 5 H 0.058 0.942 6 C 0.115 3.885 7 N -0.688 5.688 8 C 0.560 3.440 9 O -0.540 6.540 10 C 0.170 3.830 11 N -0.498 5.498 12 C 0.292 3.708 13 N -0.485 5.485 14 C 0.157 3.843 15 C -0.133 4.133 16 C -0.149 4.149 17 S 0.196 5.804 18 C -0.250 4.250 19 N -0.747 5.747 20 C -0.201 4.201 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.980 5.980 24 Si 0.934 3.066 25 H -0.285 1.285 26 H -0.261 1.261 27 H -0.303 1.303 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.418 0.582 38 H 0.235 0.765 39 H 0.186 0.814 40 H 0.226 0.774 41 H 0.361 0.639 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.557 -20.299 3.082 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.192 4.192 4 C 0.066 3.934 5 H 0.076 0.924 6 C -0.009 4.009 7 N -0.339 5.339 8 C 0.343 3.657 9 O -0.418 6.418 10 C 0.011 3.989 11 N -0.215 5.215 12 C 0.000 4.000 13 N -0.199 5.199 14 C 0.009 3.991 15 C -0.162 4.162 16 C -0.286 4.286 17 S 0.458 5.542 18 C -0.371 4.371 19 N -0.390 5.390 20 C -0.332 4.332 21 H 0.088 0.912 22 C -0.245 4.245 23 N -0.632 5.632 24 Si 0.765 3.235 25 H -0.212 1.212 26 H -0.186 1.186 27 H -0.231 1.231 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.255 0.745 38 H 0.251 0.749 39 H 0.203 0.797 40 H 0.243 0.757 41 H 0.194 0.806 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.349 -19.927 1.990 24.636 hybrid contribution 2.090 -0.357 0.719 2.239 sum -12.259 -20.284 2.709 23.855 Atomic orbital electron populations 1.21866 0.93620 1.02268 1.02205 1.21589 0.96201 0.96420 0.98241 1.21728 1.01624 0.95821 1.00058 1.20704 0.82706 0.92531 0.97476 0.92357 1.21921 0.99026 0.91664 0.88240 1.45932 1.47268 1.10087 1.30590 1.17842 0.81573 0.82571 0.83735 1.90741 1.36569 1.68051 1.46449 1.21102 0.93467 0.89737 0.94591 1.68532 1.08501 1.39387 1.05107 1.25444 0.95358 0.87144 0.92006 1.68323 1.13740 1.08853 1.28985 1.21118 0.92690 0.95739 0.89538 1.20792 1.01125 0.90986 1.03345 1.26338 0.99914 1.05530 0.96848 1.84984 1.43732 0.97625 1.27817 1.24562 1.07904 0.99998 1.04650 1.42832 1.02060 1.19568 1.74503 1.18931 0.89004 0.95901 1.29388 0.91178 1.25197 0.97304 0.99296 1.02746 1.69837 1.06859 1.31945 1.54551 0.85721 0.78382 0.80705 0.78740 1.21196 1.18627 1.23081 0.92585 0.91910 0.91589 0.91908 0.93403 0.92856 0.94253 0.88511 0.91213 0.74465 0.74878 0.79690 0.75705 0.80582 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.84 71.98 0.64 -2.64 16 2 C -0.10 -3.13 2.69 -10.79 -0.03 -3.16 16 3 C -0.13 -4.71 8.26 71.98 0.59 -4.12 16 4 C 0.17 5.86 2.18 44.99 0.10 5.96 16 5 H 0.06 2.07 8.08 -2.38 -0.02 2.05 16 6 C 0.11 3.38 4.73 86.38 0.41 3.79 16 7 N -0.69 -21.97 5.38 -465.62 -2.51 -24.48 16 8 C 0.56 18.03 7.82 86.90 0.68 18.71 16 9 O -0.54 -18.12 15.21 -3.74 -0.06 -18.18 16 10 C 0.17 5.24 6.81 42.16 0.29 5.53 16 11 N -0.50 -15.14 9.70 -189.07 -1.83 -16.97 16 12 C 0.29 7.53 12.22 181.07 2.21 9.74 16 13 N -0.48 -12.44 10.49 -191.10 -2.00 -14.45 16 14 C 0.16 3.79 7.23 40.96 0.30 4.09 16 15 C -0.13 -2.06 10.38 22.92 0.24 -1.82 16 16 C -0.15 -1.77 11.03 66.80 0.74 -1.03 16 17 S 0.20 3.97 21.59 -56.49 -1.22 2.75 16 18 C -0.25 -6.71 6.35 23.37 0.15 -6.56 16 19 N -0.75 -31.65 4.24 -322.94 -1.37 -33.02 16 20 C -0.20 -10.47 8.05 84.03 0.68 -9.79 16 21 H 0.07 3.98 7.63 -2.91 -0.02 3.96 16 22 C -0.05 -3.04 5.50 84.86 0.47 -2.57 16 23 N -0.98 -60.85 13.97 21.65 0.30 -60.55 16 24 Si 0.93 45.21 27.74 68.60 1.90 47.11 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.26 -11.68 6.51 99.48 0.65 -11.03 16 27 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.35 6.54 -2.39 -0.02 1.34 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 2.07 6.01 -2.39 -0.01 2.05 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.10 2.50 6.71 -2.39 -0.02 2.48 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.42 14.36 7.52 -92.71 -0.70 13.66 16 38 H 0.24 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.19 1.82 8.06 -2.91 -0.02 1.80 16 40 H 0.23 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.36 15.52 5.66 -92.71 -0.52 14.99 16 42 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.44 360.62 0.46 -68.98 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.21 Total: 32.68 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 7.45 Total: 16.12 kcal Atomic # 7 Polarization: -142.05 SS G_CDS: -7.41 Total: -149.46 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.06 Total: -18.18 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.22 Total: 2.75 kcal Total: -69.44 0.46 -68.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319916192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.267 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds