Wall clock time and date at job start Tue Mar 31 2020 17:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21510 * 120.00266 * 359.97438 * 8 7 6 10 10 C 1.48207 * 120.00296 * 180.02562 * 8 7 6 11 11 N 1.32979 * 120.61319 * 359.72002 * 10 8 7 12 12 C 1.31770 * 120.90572 * 179.76072 * 11 10 8 13 13 N 1.31186 * 122.65182 * 0.53330 * 12 11 10 14 14 C 1.34524 * 121.10267 * 359.73997 * 13 12 11 15 15 C 1.44793 * 130.27345 * 180.02562 * 14 13 12 16 16 C 1.32202 * 114.91356 * 179.97438 * 15 14 13 17 17 S 1.75364 * 111.45069 * 359.97438 * 16 15 14 18 18 C 1.40453 * 120.61451 * 179.97438 * 10 8 7 19 19 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 29 29 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 30 30 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 32 32 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 34 34 H 1.08994 * 109.47099 * 59.99857 * 3 2 1 35 35 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 36 36 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 37 37 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 38 38 H 1.08007 * 118.67519 * 180.24699 * 12 11 10 39 39 H 1.08001 * 122.53969 * 0.02562 * 15 14 13 40 40 H 1.08001 * 124.26842 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99792 * 94.99575 * 19 4 2 42 42 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1730 -1.1259 1.8256 10 6 5.8772 -2.4570 3.7267 11 7 5.0240 -3.0378 4.5651 12 6 5.4568 -3.7559 5.5816 13 7 6.7325 -3.9312 5.8320 14 6 7.6767 -3.3816 5.0472 15 6 9.1206 -3.4443 5.1359 16 6 9.7659 -2.7827 4.1906 17 16 8.6545 -2.0051 3.0792 18 6 7.2553 -2.6132 3.9487 19 7 1.5516 -2.1024 1.2494 20 6 0.3101 -2.3896 1.7505 21 1 -0.3093 -1.5979 2.1454 22 6 -0.1549 -3.6976 1.7453 23 7 0.5998 -4.6623 1.2636 24 14 -1.8517 -4.0883 2.4219 25 1 -2.8543 -3.9902 1.3309 26 1 -1.8579 -5.4655 2.9775 27 1 -2.1916 -3.1199 3.4952 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.9329 -1.1563 0.3177 36 1 3.9337 0.3019 1.3384 37 1 3.4279 -1.9367 2.9844 38 1 4.7320 -4.2149 6.2378 39 1 9.6315 -3.9908 5.9148 40 1 10.8417 -2.7289 4.1123 41 1 2.1078 -2.8134 0.8944 42 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319916196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:52 Heat of formation + Delta-G solvation = 42.884916 kcal Electronic energy + Delta-G solvation = -26072.360094 eV Core-core repulsion = 22372.404428 eV Total energy + Delta-G solvation = -3699.955666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27721 -39.34663 -37.29683 -36.36867 -34.08755 -33.38503 -33.12074 -30.82998 -30.40978 -28.28366 -26.22933 -25.43092 -25.11609 -23.63868 -22.30642 -21.65418 -20.43650 -19.42105 -18.59676 -18.17141 -17.24355 -16.88531 -15.80274 -15.72976 -15.57478 -15.13305 -14.74965 -14.49774 -14.43581 -14.00139 -13.81824 -13.49615 -13.32116 -13.04292 -12.85830 -12.50378 -12.25929 -12.04464 -11.64420 -11.53730 -11.14041 -10.97583 -10.93483 -10.86161 -10.83874 -10.66208 -10.33520 -10.23919 -10.10878 -9.97826 -9.57855 -9.54958 -9.45867 -8.92826 -8.79909 -8.19294 -7.03287 -5.80863 -3.10356 0.04353 0.40253 1.15479 1.71647 1.76874 2.84048 3.08561 3.40525 3.46587 3.47972 3.58465 3.68774 3.88175 4.33209 4.47179 4.54639 4.79635 5.05998 5.26596 5.29806 5.35314 5.51536 5.53376 5.60836 5.66280 5.73060 5.84607 5.94459 6.04605 6.14177 6.21419 6.35085 6.40129 6.49622 6.52521 6.59972 6.61964 6.81484 7.04608 7.28690 7.65300 7.67385 7.86253 8.26789 8.35828 9.48033 10.01654 10.37408 11.40856 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003481 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.365919 B = 8040.954602 C = 9803.469488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.055 0.945 6 C 0.110 3.890 7 N -0.678 5.678 8 C 0.559 3.441 9 O -0.532 6.532 10 C 0.195 3.805 11 N -0.473 5.473 12 C 0.300 3.700 13 N -0.480 5.480 14 C 0.165 3.835 15 C -0.122 4.122 16 C -0.185 4.185 17 S 0.211 5.789 18 C -0.230 4.230 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.423 0.577 38 H 0.209 0.791 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.737 6.457 5.495 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.014 4.014 7 N -0.329 5.329 8 C 0.341 3.659 9 O -0.410 6.410 10 C 0.035 3.965 11 N -0.190 5.190 12 C 0.008 3.992 13 N -0.195 5.195 14 C 0.019 3.981 15 C -0.153 4.153 16 C -0.323 4.323 17 S 0.474 5.526 18 C -0.351 4.351 19 N -0.362 5.362 20 C -0.368 4.368 21 H 0.091 0.909 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.207 1.207 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.262 0.738 38 H 0.226 0.774 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.665 7.261 4.412 17.821 hybrid contribution -0.828 -1.404 1.272 2.068 sum 14.837 5.857 5.684 16.933 Atomic orbital electron populations 1.21820 0.94860 1.03971 0.99024 1.21732 0.97009 0.94370 0.99953 1.21950 1.00448 0.97349 1.00997 1.20552 0.88901 0.88414 0.96217 0.92689 1.21919 0.96208 0.94860 0.88449 1.45867 1.05998 1.50648 1.30383 1.17672 0.83714 0.80936 0.83565 1.90755 1.55508 1.48687 1.46007 1.21211 0.87288 0.93789 0.94232 1.68568 1.38077 1.08188 1.04139 1.24892 0.90203 0.91813 0.92261 1.68246 1.02006 1.20378 1.28833 1.20425 0.94315 0.93246 0.90137 1.20485 0.89175 1.03689 1.01914 1.25891 1.05219 1.01723 0.99472 1.84948 0.90144 1.50816 1.26698 1.24325 0.99999 1.07205 1.03613 1.42453 1.18186 1.01744 1.73829 1.19172 0.92627 0.92430 1.32603 0.90898 1.24716 0.98210 0.95873 1.01687 1.69660 1.36712 0.99904 1.51281 0.86275 0.84452 0.77403 0.78550 1.21815 1.21876 1.20735 0.94028 0.94969 0.89442 0.91833 0.93061 0.93513 0.93157 0.91298 0.91017 0.73752 0.77424 0.82528 0.80276 0.78098 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 2 C -0.11 -1.80 2.69 -90.61 -0.24 -2.05 16 3 C -0.15 -2.03 8.84 37.16 0.33 -1.70 16 4 C 0.17 3.06 2.18 -67.93 -0.15 2.91 16 5 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 6 C 0.11 1.81 4.73 -4.04 -0.02 1.79 16 7 N -0.68 -11.70 5.38 -61.14 -0.33 -12.03 16 8 C 0.56 9.66 7.82 -12.17 -0.10 9.56 16 9 O -0.53 -9.68 15.21 5.36 0.08 -9.60 16 10 C 0.19 3.17 6.81 -82.44 -0.56 2.61 16 11 N -0.47 -7.48 9.69 -11.12 -0.11 -7.59 16 12 C 0.30 4.09 12.22 -92.69 -1.13 2.95 16 13 N -0.48 -6.66 10.49 -11.75 -0.12 -6.78 16 14 C 0.17 2.22 7.23 -83.24 -0.60 1.62 16 15 C -0.12 -1.21 10.38 -38.92 -0.40 -1.61 16 16 C -0.19 -1.56 11.03 28.81 0.32 -1.25 16 17 S 0.21 2.48 21.59 -107.50 -2.32 0.16 16 18 C -0.23 -3.35 6.35 -37.89 -0.24 -3.59 16 19 N -0.72 -16.22 4.44 -53.42 -0.24 -16.45 16 20 C -0.24 -5.96 7.57 -15.06 -0.11 -6.07 16 21 H 0.07 1.79 7.39 -52.49 -0.39 1.41 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.64 13.06 55.49 0.72 -25.92 16 24 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.84 6.01 -51.93 -0.31 1.52 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.08 6.71 -51.93 -0.35 0.74 16 37 H 0.42 7.77 7.52 -40.82 -0.31 7.46 16 38 H 0.21 2.10 8.06 -52.48 -0.42 1.68 16 39 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.38 9.57 7.80 -40.82 -0.32 9.25 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -29.84 363.74 -9.93 -39.77 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.37 Total: 13.81 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -2.70 Total: 2.72 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.07 Total: -68.77 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.32 Total: 0.16 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.84 -9.93 -39.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319916196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.658 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds