Wall clock time and date at job start Tue Mar 31 2020 17:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53012 * 109.47034 * 2 1 4 4 C 1.53006 * 109.47104 * 119.99338 * 2 1 3 5 5 H 1.08994 * 109.47567 * 300.00472 * 4 2 1 6 6 C 1.52995 * 109.47104 * 179.97438 * 4 2 1 7 7 N 1.46500 * 109.47361 * 185.00342 * 6 4 2 8 8 C 1.34770 * 120.00423 * 180.02562 * 7 6 4 9 9 O 1.21510 * 120.00266 * 359.97438 * 8 7 6 10 10 C 1.48207 * 120.00296 * 180.02562 * 8 7 6 11 11 N 1.32979 * 120.61319 * 359.72002 * 10 8 7 12 12 C 1.31770 * 120.90572 * 179.76072 * 11 10 8 13 13 N 1.31186 * 122.65182 * 0.53330 * 12 11 10 14 14 C 1.34524 * 121.10267 * 359.73997 * 13 12 11 15 15 C 1.44793 * 130.27345 * 180.02562 * 14 13 12 16 16 C 1.32202 * 114.91356 * 179.97438 * 15 14 13 17 17 S 1.75364 * 111.45069 * 359.97438 * 16 15 14 18 18 C 1.40453 * 120.61451 * 179.97438 * 10 8 7 19 19 N 1.46505 * 109.46692 * 60.00395 * 4 2 1 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 H 1.09002 * 109.47452 * 300.00278 * 1 2 3 29 29 H 1.09001 * 109.46956 * 60.00206 * 1 2 3 30 30 H 1.08998 * 109.47373 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47294 * 239.99977 * 2 1 3 32 32 H 1.08995 * 109.46796 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46647 * 300.00002 * 3 2 1 34 34 H 1.08994 * 109.47099 * 59.99857 * 3 2 1 35 35 H 1.09005 * 109.47349 * 305.00426 * 6 4 2 36 36 H 1.09002 * 109.47351 * 65.00597 * 6 4 2 37 37 H 0.96998 * 119.99598 * 0.02562 * 7 6 4 38 38 H 1.08007 * 118.67519 * 180.24699 * 12 11 10 39 39 H 1.08001 * 122.53969 * 0.02562 * 15 14 13 40 40 H 1.08001 * 124.26842 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99792 * 94.99575 * 19 4 2 42 42 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6766 -0.2073 2.1393 6 6 3.5699 -0.7217 1.2491 7 7 4.0583 -1.5139 2.3805 8 6 5.3832 -1.6552 2.5823 9 8 6.1730 -1.1259 1.8256 10 6 5.8772 -2.4570 3.7267 11 7 5.0240 -3.0378 4.5651 12 6 5.4568 -3.7559 5.5816 13 7 6.7325 -3.9312 5.8320 14 6 7.6767 -3.3816 5.0472 15 6 9.1206 -3.4443 5.1359 16 6 9.7659 -2.7827 4.1906 17 16 8.6545 -2.0051 3.0792 18 6 7.2553 -2.6132 3.9487 19 7 1.5516 -2.1024 1.2494 20 6 0.3101 -2.3896 1.7505 21 1 -0.3093 -1.5979 2.1454 22 6 -0.1549 -3.6976 1.7453 23 7 0.5998 -4.6623 1.2636 24 14 -1.8517 -4.0883 2.4219 25 1 -2.8543 -3.9902 1.3309 26 1 -1.8579 -5.4655 2.9775 27 1 -2.1916 -3.1199 3.4952 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.9329 -1.1563 0.3177 36 1 3.9337 0.3019 1.3384 37 1 3.4279 -1.9367 2.9844 38 1 4.7320 -4.2149 6.2378 39 1 9.6315 -3.9908 5.9148 40 1 10.8417 -2.7289 4.1123 41 1 2.1078 -2.8134 0.8944 42 1 0.2749 -5.5764 1.2603 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319916196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:51 Heat of formation + Delta-G solvation = 23.736261 kcal Electronic energy + Delta-G solvation = -26073.190442 eV Core-core repulsion = 22372.404428 eV Total energy + Delta-G solvation = -3700.786014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35142 -40.66458 -38.78729 -37.28410 -35.45840 -34.91759 -34.47994 -32.17349 -31.80400 -29.78917 -27.51862 -26.71815 -26.13082 -25.33030 -23.57636 -22.80679 -21.68362 -20.80145 -19.68101 -19.46386 -18.89743 -17.99897 -17.15016 -17.03468 -16.74810 -16.61069 -15.91512 -15.73609 -15.56214 -15.41496 -15.08569 -14.96018 -14.86894 -14.31445 -13.88836 -13.83392 -13.43418 -13.41917 -12.90236 -12.82827 -12.72717 -12.50135 -12.46190 -12.28483 -12.09079 -11.97747 -11.91227 -11.72333 -11.52592 -11.41621 -11.28038 -10.83018 -10.58116 -10.49106 -10.17524 -9.13239 -8.94894 -7.85974 -5.12988 -1.01055 -0.63470 0.22469 0.86955 0.89492 1.50436 1.51545 1.58646 1.61656 1.83726 2.57961 2.60663 2.64929 2.81168 3.22771 3.42193 3.48213 3.84111 3.90210 3.94365 4.08278 4.30134 4.31641 4.43978 4.54314 4.62925 4.74031 4.76801 4.92537 4.93541 4.98063 5.05119 5.07532 5.15941 5.23980 5.28829 5.43117 5.51936 5.61309 5.66606 5.78896 6.31549 6.33559 6.73537 6.90308 7.41801 8.12609 8.37358 9.36965 Molecular weight = 334.12amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003481 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.365919 B = 8040.954602 C = 9803.469488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.171 3.829 5 H 0.056 0.944 6 C 0.118 3.882 7 N -0.682 5.682 8 C 0.558 3.442 9 O -0.545 6.545 10 C 0.172 3.828 11 N -0.496 5.496 12 C 0.292 3.708 13 N -0.485 5.485 14 C 0.157 3.843 15 C -0.133 4.133 16 C -0.149 4.149 17 S 0.192 5.808 18 C -0.250 4.250 19 N -0.728 5.728 20 C -0.214 4.214 21 H 0.079 0.921 22 C -0.070 4.070 23 N -0.967 5.967 24 Si 0.957 3.043 25 H -0.294 1.294 26 H -0.303 1.303 27 H -0.269 1.269 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.418 0.582 38 H 0.236 0.764 39 H 0.187 0.813 40 H 0.227 0.773 41 H 0.371 0.629 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.453 7.925 6.302 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.199 4.199 4 C 0.063 3.937 5 H 0.074 0.926 6 C -0.006 4.006 7 N -0.332 5.332 8 C 0.341 3.659 9 O -0.423 6.423 10 C 0.012 3.988 11 N -0.213 5.213 12 C 0.001 3.999 13 N -0.199 5.199 14 C 0.009 3.991 15 C -0.162 4.162 16 C -0.286 4.286 17 S 0.455 5.545 18 C -0.372 4.372 19 N -0.367 5.367 20 C -0.346 4.346 21 H 0.097 0.903 22 C -0.262 4.262 23 N -0.619 5.619 24 Si 0.788 3.212 25 H -0.222 1.222 26 H -0.230 1.230 27 H -0.194 1.194 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.111 0.889 37 H 0.255 0.745 38 H 0.252 0.748 39 H 0.204 0.796 40 H 0.243 0.757 41 H 0.203 0.797 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.381 8.798 5.224 20.169 hybrid contribution -1.227 -1.772 1.018 2.383 sum 16.154 7.027 6.242 18.690 Atomic orbital electron populations 1.21737 0.95470 1.01759 1.00314 1.21613 0.96383 0.96353 0.98266 1.21862 1.01050 0.94784 1.02203 1.20708 0.89860 0.86166 0.97007 0.92587 1.21856 0.94928 0.95798 0.87988 1.45879 1.06083 1.50867 1.30369 1.17880 0.83436 0.80770 0.83821 1.90728 1.55683 1.49302 1.46632 1.21085 0.88387 0.94819 0.94468 1.68530 1.38717 1.09113 1.04947 1.25450 0.90929 0.91473 0.92076 1.68316 1.02162 1.20467 1.28977 1.21124 0.95975 0.92497 0.89499 1.20794 0.87316 1.04730 1.03369 1.26335 1.06591 0.98888 0.96822 1.84981 0.90192 1.51443 1.27877 1.24561 1.00041 1.07915 1.04655 1.42568 1.17313 1.03354 1.73500 1.19456 0.93058 0.92151 1.29886 0.90275 1.25338 1.01183 0.96184 1.03538 1.69810 1.38262 0.99714 1.54076 0.85369 0.81118 0.76666 0.78015 1.22161 1.23043 1.19398 0.93476 0.92966 0.93259 0.92916 0.92069 0.92004 0.92279 0.92213 0.88948 0.74477 0.74815 0.79596 0.75655 0.79684 0.94547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 8.26 71.98 0.59 -4.02 16 2 C -0.10 -3.34 2.69 -10.79 -0.03 -3.37 16 3 C -0.14 -3.44 8.84 71.99 0.64 -2.81 16 4 C 0.17 6.12 2.18 44.99 0.10 6.22 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 6 C 0.12 3.88 4.73 86.38 0.41 4.28 16 7 N -0.68 -24.01 5.38 -465.63 -2.51 -26.52 16 8 C 0.56 19.70 7.82 86.89 0.68 20.38 16 9 O -0.55 -20.02 15.21 -3.75 -0.06 -20.08 16 10 C 0.17 5.71 6.81 42.16 0.29 6.00 16 11 N -0.50 -16.12 9.69 -189.08 -1.83 -17.96 16 12 C 0.29 8.00 12.22 181.07 2.21 10.21 16 13 N -0.48 -13.15 10.49 -191.10 -2.00 -15.15 16 14 C 0.16 4.04 7.23 40.96 0.30 4.34 16 15 C -0.13 -2.24 10.38 22.92 0.24 -2.00 16 16 C -0.15 -1.98 11.03 66.80 0.74 -1.25 16 17 S 0.19 4.28 21.59 -56.49 -1.22 3.06 16 18 C -0.25 -7.25 6.35 23.37 0.15 -7.10 16 19 N -0.73 -33.33 4.44 -322.93 -1.43 -34.76 16 20 C -0.21 -10.83 7.57 84.04 0.64 -10.19 16 21 H 0.08 3.86 7.39 -2.91 -0.02 3.84 16 22 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 23 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 24 Si 0.96 44.93 29.55 68.60 2.03 46.96 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 27 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.05 2.06 6.01 -2.39 -0.01 2.04 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.38 6.54 -2.39 -0.02 1.37 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.09 2.66 6.71 -2.39 -0.02 2.65 16 37 H 0.42 15.81 7.52 -92.71 -0.70 15.12 16 38 H 0.24 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.23 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.37 19.09 7.80 -92.71 -0.72 18.36 16 42 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 Total: -1.00 -66.70 363.74 0.33 -66.37 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -0.34 Total: 37.91 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 7.41 Total: 17.32 kcal Atomic # 7 Polarization: -144.05 SS G_CDS: -7.49 Total: -151.54 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.06 Total: -20.08 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.22 Total: 3.06 kcal Total: -66.70 0.33 -66.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319916196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.107 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds