Wall clock time and date at job start Tue Mar 31 2020 18:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.55447 * 2 1 4 4 C 1.54992 * 110.61758 * 123.04637 * 2 1 3 5 5 C 1.54815 * 102.09127 * 155.52373 * 4 2 1 6 6 H 1.08998 * 110.59978 * 97.85703 * 5 4 2 7 7 N 1.46502 * 110.48500 * 220.44284 * 5 4 2 8 8 C 1.34777 * 119.99952 * 201.21813 * 7 5 4 9 9 O 1.21365 * 119.99603 * 0.02562 * 8 7 5 10 10 C 1.49317 * 120.00400 * 180.02562 * 8 7 5 11 11 O 1.21393 * 119.99317 * 359.97438 * 10 8 7 12 12 N 1.34769 * 120.00105 * 180.02562 * 10 8 7 13 13 C 1.39742 * 119.99669 * 175.77207 * 12 10 8 14 14 C 1.39003 * 120.00423 * 214.85218 * 13 12 10 15 15 C 1.37968 * 119.99006 * 179.74241 * 14 13 12 16 16 C 1.38937 * 120.00921 * 0.50586 * 15 14 13 17 17 O 1.35759 * 119.99550 * 179.74273 * 16 15 14 18 18 C 1.34793 * 117.00314 * 185.37220 * 17 16 15 19 19 H 1.08004 * 119.99942 * 354.96260 * 18 17 16 20 20 C 1.38655 * 120.00349 * 174.96993 * 18 17 16 21 21 N 1.31563 * 119.99630 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47241 * 59.99594 * 22 20 18 24 24 H 1.48499 * 109.46706 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47144 * 299.99713 * 22 20 18 26 26 C 1.38930 * 120.01223 * 359.77321 * 16 15 14 27 27 C 1.37967 * 120.01040 * 359.97007 * 26 16 15 28 28 C 1.54101 * 104.18877 * 339.11950 * 5 4 2 29 29 O 1.43746 * 107.29001 * 357.97174 * 28 5 4 30 30 H 1.08988 * 109.47384 * 181.42966 * 1 2 3 31 31 H 1.08998 * 109.46859 * 301.43332 * 1 2 3 32 32 H 1.09003 * 109.46675 * 61.42568 * 1 2 3 33 33 H 1.09002 * 110.90978 * 37.32641 * 4 2 1 34 34 H 1.09005 * 110.90897 * 273.72098 * 4 2 1 35 35 H 0.97000 * 120.00084 * 21.22440 * 7 5 4 36 36 H 0.96995 * 120.00075 * 355.49084 * 12 10 8 37 37 H 1.08002 * 120.00488 * 359.97438 * 14 13 12 38 38 H 1.07997 * 119.99420 * 180.25418 * 15 14 13 39 39 H 0.96997 * 119.99958 * 180.02562 * 21 20 18 40 40 H 1.08000 * 119.99635 * 179.97438 * 26 16 15 41 41 H 1.08002 * 120.00693 * 180.02562 * 27 26 16 42 42 H 1.09000 * 109.87557 * 117.38913 * 28 5 4 43 43 H 1.08995 * 109.88061 * 238.39966 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7911 1.2160 5 6 3.4795 -1.2178 0.7217 6 1 4.2423 -0.5365 1.0987 7 7 3.7724 -2.5926 1.1345 8 6 5.0492 -3.0196 1.1978 9 8 5.9562 -2.2651 0.9134 10 6 5.3478 -4.4210 1.6180 11 8 4.4405 -5.1755 1.9030 12 7 6.6245 -4.8478 1.6818 13 6 6.9095 -6.1299 2.1592 14 6 8.0669 -6.3563 2.8949 15 6 8.3454 -7.6211 3.3705 16 6 7.4744 -8.6706 3.1053 17 8 7.7513 -9.9161 3.5690 18 6 6.9261 -10.9100 3.1841 19 1 6.0441 -10.6849 2.6027 20 6 7.2093 -12.2213 3.5346 21 7 8.2838 -12.4955 4.2425 22 14 6.0652 -13.5984 3.0017 23 1 5.9880 -13.6320 1.5191 24 1 6.5878 -14.8963 3.4992 25 1 4.7108 -13.3617 3.5626 26 6 6.3204 -8.4458 2.3651 27 6 6.0386 -7.1801 1.8936 28 6 3.3839 -1.1243 -0.8135 29 8 2.0384 -0.7336 -1.1348 30 1 -0.3633 -1.0272 0.0256 31 1 -0.3633 0.5359 0.8768 32 1 -0.3633 0.4916 -0.9025 33 1 1.4549 -1.6626 1.4235 34 1 2.1509 -0.1506 2.0948 35 1 3.0475 -3.1955 1.3621 36 1 7.3452 -4.2666 1.3926 37 1 8.7463 -5.5415 3.0973 38 1 9.2425 -7.7963 3.9456 39 1 8.4822 -13.4128 4.4874 40 1 5.6438 -9.2618 2.1587 41 1 5.1413 -7.0054 1.3185 42 1 4.0853 -0.3765 -1.1836 43 1 3.6070 -2.0939 -1.2585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326088105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:46 Heat of formation + Delta-G solvation = -105.430395 kcal Electronic energy + Delta-G solvation = -27357.069572 eV Core-core repulsion = 23175.636849 eV Total energy + Delta-G solvation = -4181.432723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.12535 -40.10406 -39.11515 -38.35980 -36.65886 -35.29240 -33.97391 -32.61287 -32.24145 -30.62452 -30.28223 -28.36373 -26.57629 -25.63031 -24.78628 -22.55418 -22.01917 -21.78904 -21.06921 -20.20510 -18.95642 -17.99073 -17.47048 -17.31865 -16.90417 -16.30891 -16.21046 -15.92018 -15.73479 -14.83407 -14.60624 -14.50636 -14.13611 -13.98107 -13.73577 -13.67263 -13.62262 -13.03129 -12.96602 -12.95801 -12.64523 -12.35253 -12.08251 -11.96780 -11.81579 -11.72224 -11.63044 -11.44664 -11.38556 -11.05209 -10.80375 -10.48761 -10.25560 -9.82866 -9.71411 -9.58369 -9.25549 -8.76666 -8.29012 -7.04418 -6.49678 -4.07057 1.16272 2.05647 2.12489 2.29458 3.08824 3.12267 3.15598 3.15998 3.32194 3.51481 3.89462 3.93881 4.21513 4.32454 4.42466 4.50199 4.53117 4.68687 4.83215 5.04487 5.05863 5.14684 5.19726 5.22583 5.29163 5.39950 5.49787 5.60132 5.65192 5.66730 5.87473 5.99966 6.07843 6.20848 6.39497 6.58332 6.67487 6.82455 6.91315 6.98223 7.21876 7.36020 7.36329 7.60741 7.66819 7.94886 8.03351 8.95620 9.63698 10.67742 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.001973 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.958528 B =14190.458406 C =15137.389621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.111 3.889 6 H 0.108 0.892 7 N -0.695 5.695 8 C 0.514 3.486 9 O -0.520 6.520 10 C 0.495 3.505 11 O -0.508 6.508 12 N -0.622 5.622 13 C 0.020 3.980 14 C -0.084 4.084 15 C -0.178 4.178 16 C 0.150 3.850 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.222 4.222 27 C -0.059 4.059 28 C 0.037 3.963 29 O -0.371 6.371 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.416 0.584 36 H 0.414 0.586 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.271 0.729 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.071 0.929 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.122 23.663 -6.886 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.093 0.907 4 C -0.196 4.196 5 C 0.006 3.994 6 H 0.126 0.874 7 N -0.349 5.349 8 C 0.295 3.705 9 O -0.395 6.395 10 C 0.276 3.724 11 O -0.384 6.384 12 N -0.267 5.267 13 C -0.072 4.072 14 C -0.104 4.104 15 C -0.198 4.198 16 C 0.096 3.904 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.242 4.242 27 C -0.079 4.079 28 C -0.041 4.041 29 O -0.290 6.290 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.254 0.746 36 H 0.250 0.750 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.089 0.911 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.937 23.333 -6.817 26.655 hybrid contribution -0.391 -0.609 -0.104 0.731 sum -11.328 22.723 -6.920 26.317 Atomic orbital electron populations 1.21783 0.92653 1.03262 1.02754 1.23125 0.95696 0.95370 0.84356 0.90703 1.23512 0.94718 1.01909 0.99468 1.22484 0.98391 0.83541 0.95001 0.87384 1.45816 1.07996 1.13631 1.67487 1.20261 0.83531 0.88465 0.78271 1.90765 1.44971 1.56281 1.47469 1.19937 0.84199 0.87721 0.80505 1.90787 1.44805 1.55545 1.47219 1.42827 1.07589 1.15294 1.61025 1.17232 0.99771 0.83075 1.07136 1.20388 0.96309 0.96530 0.97162 1.20002 1.01269 0.91003 1.07487 1.19444 0.92448 0.86941 0.91613 1.83962 1.50236 1.11997 1.61312 1.21312 1.05368 0.84661 1.35466 0.88952 1.25311 0.97267 0.97516 0.96391 1.70029 1.24407 1.20652 1.34337 0.85762 0.79373 0.79082 0.79148 1.19428 1.20249 1.19416 1.21087 0.99878 0.97307 1.05937 1.20833 0.98323 0.90862 0.97907 1.23630 0.84660 1.01705 0.94114 1.88940 1.27623 1.73685 1.38791 0.91563 0.90887 0.91557 0.89201 0.88906 0.74646 0.74967 0.86415 0.85818 0.91869 0.85022 0.85680 0.91089 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.66 37.16 0.36 -0.36 16 2 C 0.07 0.44 3.98 -25.68 -0.10 0.33 16 3 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.16 -0.86 6.30 -24.72 -0.16 -1.01 16 5 C 0.11 0.83 3.35 -66.40 -0.22 0.61 16 6 H 0.11 0.82 7.66 -51.93 -0.40 0.42 16 7 N -0.69 -6.34 5.04 -52.79 -0.27 -6.61 16 8 C 0.51 6.06 7.88 -11.65 -0.09 5.97 16 9 O -0.52 -6.81 16.19 5.48 0.09 -6.72 16 10 C 0.50 7.00 7.72 -11.65 -0.09 6.91 16 11 O -0.51 -8.35 13.92 5.46 0.08 -8.28 16 12 N -0.62 -8.87 5.32 -10.27 -0.05 -8.93 16 13 C 0.02 0.35 6.30 -83.69 -0.53 -0.18 16 14 C -0.08 -1.44 9.96 -39.40 -0.39 -1.83 16 15 C -0.18 -3.61 9.98 -39.42 -0.39 -4.00 16 16 C 0.15 3.56 6.65 -39.07 -0.26 3.30 16 17 O -0.17 -4.82 9.75 0.13 0.00 -4.82 16 18 C -0.39 -10.80 9.48 30.89 0.29 -10.51 16 19 H 0.09 2.36 5.19 -52.48 -0.27 2.08 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 21 N -0.86 -24.83 13.67 55.48 0.76 -24.07 16 22 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.22 -4.87 9.16 -39.42 -0.36 -5.23 16 27 C -0.06 -1.16 8.68 -39.40 -0.34 -1.50 16 28 C 0.04 0.30 7.50 37.73 0.28 0.59 16 29 O -0.37 -3.35 11.22 -35.23 -0.40 -3.74 16 30 H 0.07 0.36 8.13 -51.94 -0.42 -0.07 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.48 7.65 -51.93 -0.40 0.08 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.42 3.51 7.82 -40.82 -0.32 3.19 16 36 H 0.41 4.93 8.30 -40.82 -0.34 4.59 16 37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 39 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.13 2.88 5.63 -52.49 -0.30 2.59 16 41 H 0.13 2.35 6.23 -52.49 -0.33 2.02 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -32.45 367.77 -6.65 -39.10 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.28 Total: 9.16 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.10 Total: -5.92 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.44 Total: -39.60 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.23 Total: -23.56 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -6.65 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.331 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds