Wall clock time and date at job start Tue Mar 31 2020 18:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.55447 * 2 1 4 4 C 1.54992 * 110.61758 * 123.04637 * 2 1 3 5 5 C 1.54815 * 102.09127 * 155.52373 * 4 2 1 6 6 H 1.08998 * 110.59978 * 97.85703 * 5 4 2 7 7 N 1.46502 * 110.48500 * 220.44284 * 5 4 2 8 8 C 1.34777 * 119.99952 * 201.21813 * 7 5 4 9 9 O 1.21365 * 119.99603 * 0.02562 * 8 7 5 10 10 C 1.49317 * 120.00400 * 180.02562 * 8 7 5 11 11 O 1.21393 * 119.99317 * 359.97438 * 10 8 7 12 12 N 1.34769 * 120.00105 * 180.02562 * 10 8 7 13 13 C 1.39742 * 119.99669 * 175.77207 * 12 10 8 14 14 C 1.39003 * 120.00423 * 214.85218 * 13 12 10 15 15 C 1.37968 * 119.99006 * 179.74241 * 14 13 12 16 16 C 1.38937 * 120.00921 * 0.50586 * 15 14 13 17 17 O 1.35759 * 119.99550 * 179.74273 * 16 15 14 18 18 C 1.34793 * 117.00314 * 185.37220 * 17 16 15 19 19 H 1.08004 * 119.99942 * 354.96260 * 18 17 16 20 20 C 1.38655 * 120.00349 * 174.96993 * 18 17 16 21 21 N 1.31563 * 119.99630 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99973 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47241 * 59.99594 * 22 20 18 24 24 H 1.48499 * 109.46706 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47144 * 299.99713 * 22 20 18 26 26 C 1.38930 * 120.01223 * 359.77321 * 16 15 14 27 27 C 1.37967 * 120.01040 * 359.97007 * 26 16 15 28 28 C 1.54101 * 104.18877 * 339.11950 * 5 4 2 29 29 O 1.43746 * 107.29001 * 357.97174 * 28 5 4 30 30 H 1.08988 * 109.47384 * 181.42966 * 1 2 3 31 31 H 1.08998 * 109.46859 * 301.43332 * 1 2 3 32 32 H 1.09003 * 109.46675 * 61.42568 * 1 2 3 33 33 H 1.09002 * 110.90978 * 37.32641 * 4 2 1 34 34 H 1.09005 * 110.90897 * 273.72098 * 4 2 1 35 35 H 0.97000 * 120.00084 * 21.22440 * 7 5 4 36 36 H 0.96995 * 120.00075 * 355.49084 * 12 10 8 37 37 H 1.08002 * 120.00488 * 359.97438 * 14 13 12 38 38 H 1.07997 * 119.99420 * 180.25418 * 15 14 13 39 39 H 0.96997 * 119.99958 * 180.02562 * 21 20 18 40 40 H 1.08000 * 119.99635 * 179.97438 * 26 16 15 41 41 H 1.08002 * 120.00693 * 180.02562 * 27 26 16 42 42 H 1.09000 * 109.87557 * 117.38913 * 28 5 4 43 43 H 1.08995 * 109.88061 * 238.39966 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7911 1.2160 5 6 3.4795 -1.2178 0.7217 6 1 4.2423 -0.5365 1.0987 7 7 3.7724 -2.5926 1.1345 8 6 5.0492 -3.0196 1.1978 9 8 5.9562 -2.2651 0.9134 10 6 5.3478 -4.4210 1.6180 11 8 4.4405 -5.1755 1.9030 12 7 6.6245 -4.8478 1.6818 13 6 6.9095 -6.1299 2.1592 14 6 8.0669 -6.3563 2.8949 15 6 8.3454 -7.6211 3.3705 16 6 7.4744 -8.6706 3.1053 17 8 7.7513 -9.9161 3.5690 18 6 6.9261 -10.9100 3.1841 19 1 6.0441 -10.6849 2.6027 20 6 7.2093 -12.2213 3.5346 21 7 8.2838 -12.4955 4.2425 22 14 6.0652 -13.5984 3.0017 23 1 5.9880 -13.6320 1.5191 24 1 6.5878 -14.8963 3.4992 25 1 4.7108 -13.3617 3.5626 26 6 6.3204 -8.4458 2.3651 27 6 6.0386 -7.1801 1.8936 28 6 3.3839 -1.1243 -0.8135 29 8 2.0384 -0.7336 -1.1348 30 1 -0.3633 -1.0272 0.0256 31 1 -0.3633 0.5359 0.8768 32 1 -0.3633 0.4916 -0.9025 33 1 1.4549 -1.6626 1.4235 34 1 2.1509 -0.1506 2.0948 35 1 3.0475 -3.1955 1.3621 36 1 7.3452 -4.2666 1.3926 37 1 8.7463 -5.5415 3.0973 38 1 9.2425 -7.7963 3.9456 39 1 8.4822 -13.4128 4.4874 40 1 5.6438 -9.2618 2.1587 41 1 5.1413 -7.0054 1.3185 42 1 4.0853 -0.3765 -1.1836 43 1 3.6070 -2.0939 -1.2585 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326088105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:45 Heat of formation + Delta-G solvation = -129.589377 kcal Electronic energy + Delta-G solvation = -27358.117184 eV Core-core repulsion = 23175.636849 eV Total energy + Delta-G solvation = -4182.480335 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18174 -41.09247 -40.44604 -39.56174 -38.22688 -36.22957 -35.28825 -34.17607 -33.10004 -31.92374 -31.28542 -29.88771 -27.45312 -27.06259 -26.04967 -24.02754 -23.22983 -22.35986 -22.13423 -21.28609 -20.26870 -19.64236 -18.88129 -18.39954 -17.91052 -17.40334 -17.10154 -16.93619 -16.54143 -16.30068 -16.08194 -15.74520 -15.51535 -15.31372 -15.08373 -14.85397 -14.67621 -14.39675 -14.17662 -13.59171 -13.49255 -13.46264 -13.36364 -13.27067 -12.87575 -12.79054 -12.69534 -12.61593 -12.45468 -12.22265 -12.15096 -11.86432 -11.47355 -11.14130 -10.86701 -10.75986 -10.58705 -10.32253 -9.88212 -8.70906 -8.47472 -6.14267 0.01969 0.50651 0.66994 1.16768 1.36088 1.46043 1.51679 2.01065 2.17900 2.47266 2.78893 2.84437 3.12304 3.25797 3.39334 3.48703 3.70897 3.92505 3.98171 4.05712 4.08041 4.19461 4.41829 4.44743 4.50391 4.57388 4.63817 4.66658 4.73131 4.82782 4.92010 5.04190 5.06501 5.06927 5.16691 5.26756 5.30099 5.34310 5.48963 5.66232 5.78736 5.90265 6.00864 6.08092 6.26252 6.62917 6.84584 6.97069 7.74975 8.74685 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021870 B = 0.001973 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.958528 B =14190.458406 C =15137.389621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.088 0.912 4 C -0.150 4.150 5 C 0.110 3.890 6 H 0.113 0.887 7 N -0.681 5.681 8 C 0.523 3.477 9 O -0.531 6.531 10 C 0.499 3.501 11 O -0.529 6.529 12 N -0.618 5.618 13 C 0.048 3.952 14 C -0.070 4.070 15 C -0.180 4.180 16 C 0.113 3.887 17 O -0.224 6.224 18 C -0.415 4.415 19 H 0.100 0.900 20 C -0.020 4.020 21 N -0.916 5.916 22 Si 1.016 2.984 23 H -0.258 1.258 24 H -0.271 1.271 25 H -0.259 1.259 26 C -0.228 4.228 27 C -0.068 4.068 28 C 0.037 3.963 29 O -0.394 6.394 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.420 0.580 36 H 0.430 0.570 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.273 0.727 40 H 0.122 0.878 41 H 0.133 0.867 42 H 0.077 0.923 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 26.637 -7.527 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.106 0.894 4 C -0.188 4.188 5 C 0.006 3.994 6 H 0.131 0.869 7 N -0.335 5.335 8 C 0.303 3.697 9 O -0.407 6.407 10 C 0.281 3.719 11 O -0.406 6.406 12 N -0.265 5.265 13 C -0.045 4.045 14 C -0.090 4.090 15 C -0.199 4.199 16 C 0.062 3.938 17 O -0.130 6.130 18 C -0.491 4.491 19 H 0.118 0.882 20 C -0.218 4.218 21 N -0.554 5.554 22 Si 0.836 3.164 23 H -0.183 1.183 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.248 4.248 27 C -0.088 4.088 28 C -0.041 4.041 29 O -0.314 6.314 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.132 0.868 35 H 0.259 0.741 36 H 0.269 0.731 37 H 0.183 0.817 38 H 0.149 0.851 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.151 0.849 42 H 0.095 0.905 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.272 26.401 -7.487 30.061 hybrid contribution -0.066 -1.078 -0.015 1.080 sum -12.339 25.323 -7.502 29.151 Atomic orbital electron populations 1.21809 0.91928 1.03078 1.03543 1.23360 0.96338 0.95788 0.83615 0.89418 1.23525 0.93091 1.02264 0.99912 1.22642 0.99834 0.82299 0.94654 0.86937 1.45833 1.07099 1.14479 1.66067 1.19711 0.84315 0.87053 0.78620 1.90776 1.45452 1.56054 1.48434 1.20407 0.83593 0.88641 0.79290 1.90790 1.45476 1.56512 1.47808 1.42768 1.08507 1.14168 1.61047 1.17356 0.98626 0.83945 1.04575 1.20784 0.96581 0.96377 0.95227 1.20309 1.00961 0.91388 1.07286 1.19975 0.94062 0.86651 0.93154 1.83932 1.51659 1.13429 1.63980 1.21756 1.05911 0.85408 1.35983 0.88236 1.26547 0.99039 0.99939 0.96286 1.70165 1.26977 1.21265 1.36951 0.84679 0.77215 0.75403 0.79148 1.18260 1.19506 1.18317 1.21106 0.99381 0.98232 1.06102 1.20936 0.99228 0.90469 0.98167 1.23598 0.84749 1.01256 0.94511 1.88924 1.27889 1.74242 1.40346 0.92292 0.88882 0.91953 0.88978 0.86764 0.74129 0.73097 0.81737 0.85148 0.91757 0.86022 0.84944 0.90528 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.66 71.98 0.70 -0.43 16 2 C 0.07 0.64 3.98 31.28 0.12 0.76 16 3 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 4 C -0.15 -1.18 6.30 31.90 0.20 -0.98 16 5 C 0.11 1.36 3.35 45.98 0.15 1.51 16 6 H 0.11 1.36 7.66 -2.39 -0.02 1.35 16 7 N -0.68 -10.73 5.04 -439.30 -2.21 -12.94 16 8 C 0.52 10.92 7.88 87.23 0.69 11.60 16 9 O -0.53 -12.33 16.19 -3.29 -0.05 -12.39 16 10 C 0.50 12.78 7.72 87.23 0.67 13.46 16 11 O -0.53 -16.32 13.92 -3.38 -0.05 -16.37 16 12 N -0.62 -15.63 5.32 -304.75 -1.62 -17.25 16 13 C 0.05 1.56 6.30 38.25 0.24 1.80 16 14 C -0.07 -2.20 9.96 22.39 0.22 -1.98 16 15 C -0.18 -7.22 9.98 22.37 0.22 -6.99 16 16 C 0.11 5.51 6.65 22.60 0.15 5.66 16 17 O -0.22 -13.25 9.75 -22.46 -0.22 -13.46 16 18 C -0.41 -23.99 9.48 67.92 0.64 -23.35 16 19 H 0.10 5.33 5.19 -2.91 -0.02 5.32 16 20 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 21 N -0.92 -55.53 13.67 21.61 0.30 -55.23 16 22 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 C -0.23 -10.21 9.16 22.37 0.20 -10.01 16 27 C -0.07 -2.59 8.68 22.39 0.19 -2.39 16 28 C 0.04 0.54 7.50 72.35 0.54 1.09 16 29 O -0.39 -6.50 11.22 -148.98 -1.67 -8.17 16 30 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 31 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.71 7.65 -2.39 -0.02 0.70 16 34 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.42 6.10 7.82 -92.71 -0.72 5.37 16 36 H 0.43 8.55 8.30 -92.71 -0.77 7.78 16 37 H 0.17 3.69 8.06 -2.91 -0.02 3.66 16 38 H 0.13 5.00 8.06 -2.91 -0.02 4.97 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.12 5.57 5.63 -2.91 -0.02 5.55 16 41 H 0.13 4.84 6.23 -2.91 -0.02 4.82 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.32 7.93 -2.39 -0.02 1.30 16 Total: -1.00 -74.12 367.77 1.51 -72.61 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.41 Total: 29.32 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.42 Total: -10.90 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -3.54 Total: -85.43 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -1.99 Total: -50.39 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -74.12 1.51 -72.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.977 kcal (2) G-P(sol) polarization free energy of solvation -74.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds