Wall clock time and date at job start Tue Mar 31 2020 18:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.55188 * 2 1 4 4 C 1.55347 * 110.59067 * 123.06251 * 2 1 3 5 5 C 1.54808 * 101.93494 * 155.54233 * 4 2 1 6 6 H 1.08997 * 110.48502 * 220.33391 * 5 4 2 7 7 N 1.46500 * 110.48610 * 97.82179 * 5 4 2 8 8 C 1.34776 * 119.99720 * 156.84156 * 7 5 4 9 9 O 1.21358 * 120.00377 * 0.02562 * 8 7 5 10 10 C 1.49323 * 119.99557 * 179.97438 * 8 7 5 11 11 O 1.21388 * 120.00294 * 359.97438 * 10 8 7 12 12 N 1.34783 * 119.99791 * 180.02562 * 10 8 7 13 13 C 1.39736 * 120.00107 * 175.77252 * 12 10 8 14 14 C 1.38989 * 120.00827 * 214.85156 * 13 12 10 15 15 C 1.37971 * 119.99480 * 179.74299 * 14 13 12 16 16 C 1.38936 * 120.00761 * 0.52832 * 15 14 13 17 17 O 1.35750 * 119.99665 * 179.76233 * 16 15 14 18 18 C 1.34800 * 117.00428 * 185.32158 * 17 16 15 19 19 H 1.08006 * 119.99902 * 354.96857 * 18 17 16 20 20 C 1.38654 * 120.00360 * 174.96294 * 18 17 16 21 21 N 1.31564 * 119.99735 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47308 * 60.00207 * 22 20 18 24 24 H 1.48495 * 109.47312 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47362 * 300.00358 * 22 20 18 26 26 C 1.38945 * 120.01045 * 359.74787 * 16 15 14 27 27 C 1.37966 * 120.00525 * 359.97305 * 26 16 15 28 28 C 1.54094 * 104.30516 * 339.08077 * 5 4 2 29 29 O 1.43747 * 107.29410 * 358.03574 * 28 5 4 30 30 H 1.09001 * 109.46924 * 181.42327 * 1 2 3 31 31 H 1.09004 * 109.46797 * 301.42038 * 1 2 3 32 32 H 1.08997 * 109.47803 * 61.42240 * 1 2 3 33 33 H 1.08998 * 110.95717 * 37.40393 * 4 2 1 34 34 H 1.09004 * 111.00159 * 273.69822 * 4 2 1 35 35 H 0.96998 * 120.00427 * 336.84371 * 7 5 4 36 36 H 0.97003 * 119.99550 * 355.49141 * 12 10 8 37 37 H 1.08001 * 120.00402 * 359.97438 * 14 13 12 38 38 H 1.08004 * 119.99573 * 180.27259 * 15 14 13 39 39 H 0.96995 * 119.99682 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.99048 * 179.97438 * 26 16 15 41 41 H 1.07997 * 120.00019 * 180.02562 * 27 26 16 42 42 H 1.09002 * 109.88274 * 117.45736 * 28 5 4 43 43 H 1.09007 * 109.88123 * 238.46314 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0763 -0.7934 1.2188 5 6 3.4795 -1.2179 0.7214 6 1 3.6998 -2.2403 1.0283 7 7 4.5026 -0.2999 1.2284 8 6 5.7837 -0.7068 1.3270 9 8 6.0899 -1.8333 0.9954 10 6 6.8265 0.2291 1.8432 11 8 6.5205 1.3563 2.1737 12 7 8.1078 -0.1776 1.9413 13 6 9.0983 0.7238 2.3402 14 6 10.3766 0.6347 1.8020 15 6 11.3530 1.5282 2.1920 16 6 11.0614 2.5099 3.1309 17 8 12.0236 3.3858 3.5180 18 6 11.7085 4.2418 4.5106 19 1 10.7030 4.2656 4.9043 20 6 12.6752 5.0915 5.0263 21 7 13.8999 5.0628 4.5465 22 14 12.2387 6.2771 6.4022 23 1 11.7666 5.5117 7.5840 24 1 13.4388 7.0694 6.7723 25 1 11.1634 7.1931 5.9439 26 6 9.7851 2.5956 3.6733 27 6 8.8069 1.7061 3.2794 28 6 3.3839 -1.1242 -0.8137 29 8 2.0383 -0.7335 -1.1349 30 1 -0.3633 -1.0274 0.0255 31 1 -0.3633 0.5358 0.8770 32 1 -0.3634 0.4915 -0.9024 33 1 1.4565 -1.6658 1.4256 34 1 2.1523 -0.1544 2.0986 35 1 4.2580 0.6006 1.4932 36 1 8.3416 -1.0970 1.7390 37 1 10.6047 -0.1314 1.0757 38 1 12.3452 1.4617 1.7705 39 1 14.5760 5.6575 4.9070 40 1 9.5590 3.3587 4.4034 41 1 7.8148 1.7730 3.7008 42 1 4.0853 -0.3763 -1.1838 43 1 3.6070 -2.0938 -1.2589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326088106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:49 Heat of formation + Delta-G solvation = -105.544189 kcal Electronic energy + Delta-G solvation = -27409.605951 eV Core-core repulsion = 23228.168294 eV Total energy + Delta-G solvation = -4181.437657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15121 -40.10913 -39.10641 -38.36165 -36.66859 -35.26961 -33.98184 -32.56321 -32.24930 -30.64136 -30.29050 -28.36967 -26.57525 -25.63400 -24.76871 -22.53860 -22.06598 -21.68867 -21.21218 -20.30327 -18.96478 -17.99634 -17.59662 -17.17603 -16.70776 -16.40147 -16.10386 -15.78460 -15.54255 -15.34802 -14.63409 -14.51794 -14.30764 -13.86650 -13.69448 -13.64547 -13.50726 -13.11642 -12.97545 -12.77842 -12.65286 -12.48547 -12.17321 -11.94877 -11.83285 -11.74597 -11.63692 -11.43622 -11.27013 -11.05998 -10.81192 -10.49502 -10.15859 -9.83724 -9.73559 -9.67716 -9.26414 -8.77459 -8.29812 -7.05194 -6.50380 -4.07808 1.15085 2.04815 2.11636 2.28217 3.07929 3.11485 3.14690 3.15227 3.33121 3.52681 3.90246 3.93089 4.16600 4.31485 4.40487 4.50447 4.59995 4.68713 4.86008 5.03796 5.07416 5.14938 5.19043 5.25079 5.34368 5.40904 5.52544 5.59409 5.64238 5.66776 5.81838 5.98978 6.07012 6.19911 6.41637 6.56896 6.66172 6.80996 6.90275 6.97187 7.20896 7.35026 7.35385 7.59604 7.65922 7.94133 8.02147 8.94865 9.62955 10.67036 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.001995 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.202061 B =14034.800754 C =14953.894786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.109 3.891 6 H 0.110 0.890 7 N -0.697 5.697 8 C 0.515 3.485 9 O -0.518 6.518 10 C 0.495 3.505 11 O -0.509 6.509 12 N -0.622 5.622 13 C 0.020 3.980 14 C -0.084 4.084 15 C -0.178 4.178 16 C 0.150 3.850 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.222 4.222 27 C -0.059 4.059 28 C 0.037 3.963 29 O -0.371 6.371 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.414 0.586 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.490 -11.838 -6.231 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.092 0.908 4 C -0.196 4.196 5 C 0.004 3.996 6 H 0.128 0.872 7 N -0.352 5.352 8 C 0.296 3.704 9 O -0.393 6.393 10 C 0.276 3.724 11 O -0.384 6.384 12 N -0.267 5.267 13 C -0.072 4.072 14 C -0.104 4.104 15 C -0.198 4.198 16 C 0.096 3.904 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.242 4.242 27 C -0.079 4.079 28 C -0.041 4.041 29 O -0.290 6.290 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.252 0.748 36 H 0.250 0.750 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.146 -11.731 -6.485 25.887 hybrid contribution -0.063 0.607 0.859 1.054 sum -22.209 -11.124 -5.626 25.468 Atomic orbital electron populations 1.21776 0.92717 1.03084 1.02805 1.23273 0.95650 0.95464 0.84581 0.90842 1.23578 0.94591 1.02110 0.99315 1.22432 0.87414 0.95632 0.94115 0.87170 1.45832 1.06692 1.17761 1.64885 1.20249 0.83793 0.87522 0.78875 1.90765 1.81028 1.19803 1.47744 1.19946 0.83985 0.87584 0.80854 1.90783 1.80639 1.19654 1.47340 1.42833 1.05604 1.14030 1.64247 1.17226 0.88557 0.98064 1.03387 1.20388 0.91613 0.99295 0.99073 1.20006 0.99900 0.97124 1.02730 1.19447 0.88672 0.89324 0.92995 1.83963 1.35171 1.40166 1.48191 1.21312 0.97765 1.15156 1.12582 0.88954 1.25313 0.94597 0.98002 0.98581 1.70029 1.01975 1.36855 1.40541 0.85762 0.78225 0.79471 0.79897 1.19430 1.20246 1.19422 1.21089 0.93148 1.03584 1.06406 1.20825 0.99033 0.93909 0.94158 1.23651 0.84786 1.01678 0.93958 1.88928 1.27520 1.73662 1.38897 0.91651 0.90883 0.91598 0.88544 0.88947 0.74805 0.74958 0.86405 0.85809 0.91861 0.85025 0.85700 0.91555 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.66 37.16 0.36 -0.38 16 2 C 0.07 0.44 3.98 -25.49 -0.10 0.34 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.16 -0.85 6.24 -24.53 -0.15 -1.00 16 5 C 0.11 0.81 3.36 -66.41 -0.22 0.59 16 6 H 0.11 0.86 7.61 -51.93 -0.40 0.46 16 7 N -0.70 -6.17 4.99 -52.80 -0.26 -6.43 16 8 C 0.51 5.99 7.88 -11.65 -0.09 5.90 16 9 O -0.52 -6.76 16.16 5.49 0.09 -6.67 16 10 C 0.50 6.92 7.72 -11.64 -0.09 6.83 16 11 O -0.51 -8.24 13.92 5.46 0.08 -8.17 16 12 N -0.62 -8.80 5.32 -10.27 -0.05 -8.85 16 13 C 0.02 0.34 6.30 -83.70 -0.53 -0.18 16 14 C -0.08 -1.43 9.96 -39.40 -0.39 -1.82 16 15 C -0.18 -3.60 9.98 -39.42 -0.39 -3.99 16 16 C 0.15 3.55 6.65 -39.06 -0.26 3.29 16 17 O -0.17 -4.81 9.75 0.13 0.00 -4.80 16 18 C -0.39 -10.77 9.48 30.89 0.29 -10.47 16 19 H 0.09 2.34 5.19 -52.48 -0.27 2.07 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.77 13.67 55.48 0.76 -24.01 16 22 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.22 -4.84 9.16 -39.42 -0.36 -5.20 16 27 C -0.06 -1.15 8.68 -39.40 -0.34 -1.49 16 28 C 0.04 0.31 7.50 37.73 0.28 0.59 16 29 O -0.37 -3.36 11.22 -35.23 -0.40 -3.76 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.09 0.41 7.98 -51.93 -0.41 -0.01 16 35 H 0.41 3.31 8.03 -40.82 -0.33 2.98 16 36 H 0.41 4.89 8.30 -40.82 -0.34 4.55 16 37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 2.86 5.63 -52.49 -0.30 2.57 16 41 H 0.13 2.32 6.23 -52.49 -0.33 1.99 16 42 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 43 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -32.32 368.07 -6.66 -38.98 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.30 Total: 9.00 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.10 Total: -6.03 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.44 Total: -39.29 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.23 Total: -23.39 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.32 -6.66 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.568 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds