Wall clock time and date at job start Tue Mar 31 2020 18:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.55188 * 2 1 4 4 C 1.55347 * 110.59067 * 123.06251 * 2 1 3 5 5 C 1.54808 * 101.93494 * 155.54233 * 4 2 1 6 6 H 1.08997 * 110.48502 * 220.33391 * 5 4 2 7 7 N 1.46500 * 110.48610 * 97.82179 * 5 4 2 8 8 C 1.34776 * 119.99720 * 156.84156 * 7 5 4 9 9 O 1.21358 * 120.00377 * 0.02562 * 8 7 5 10 10 C 1.49323 * 119.99557 * 179.97438 * 8 7 5 11 11 O 1.21388 * 120.00294 * 359.97438 * 10 8 7 12 12 N 1.34783 * 119.99791 * 180.02562 * 10 8 7 13 13 C 1.39736 * 120.00107 * 175.77252 * 12 10 8 14 14 C 1.38989 * 120.00827 * 214.85156 * 13 12 10 15 15 C 1.37971 * 119.99480 * 179.74299 * 14 13 12 16 16 C 1.38936 * 120.00761 * 0.52832 * 15 14 13 17 17 O 1.35750 * 119.99665 * 179.76233 * 16 15 14 18 18 C 1.34800 * 117.00428 * 185.32158 * 17 16 15 19 19 H 1.08006 * 119.99902 * 354.96857 * 18 17 16 20 20 C 1.38654 * 120.00360 * 174.96294 * 18 17 16 21 21 N 1.31564 * 119.99735 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00109 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47308 * 60.00207 * 22 20 18 24 24 H 1.48495 * 109.47312 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47362 * 300.00358 * 22 20 18 26 26 C 1.38945 * 120.01045 * 359.74787 * 16 15 14 27 27 C 1.37966 * 120.00525 * 359.97305 * 26 16 15 28 28 C 1.54094 * 104.30516 * 339.08077 * 5 4 2 29 29 O 1.43747 * 107.29410 * 358.03574 * 28 5 4 30 30 H 1.09001 * 109.46924 * 181.42327 * 1 2 3 31 31 H 1.09004 * 109.46797 * 301.42038 * 1 2 3 32 32 H 1.08997 * 109.47803 * 61.42240 * 1 2 3 33 33 H 1.08998 * 110.95717 * 37.40393 * 4 2 1 34 34 H 1.09004 * 111.00159 * 273.69822 * 4 2 1 35 35 H 0.96998 * 120.00427 * 336.84371 * 7 5 4 36 36 H 0.97003 * 119.99550 * 355.49141 * 12 10 8 37 37 H 1.08001 * 120.00402 * 359.97438 * 14 13 12 38 38 H 1.08004 * 119.99573 * 180.27259 * 15 14 13 39 39 H 0.96995 * 119.99682 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.99048 * 179.97438 * 26 16 15 41 41 H 1.07997 * 120.00019 * 180.02562 * 27 26 16 42 42 H 1.09002 * 109.88274 * 117.45736 * 28 5 4 43 43 H 1.09007 * 109.88123 * 238.46314 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0763 -0.7934 1.2188 5 6 3.4795 -1.2179 0.7214 6 1 3.6998 -2.2403 1.0283 7 7 4.5026 -0.2999 1.2284 8 6 5.7837 -0.7068 1.3270 9 8 6.0899 -1.8333 0.9954 10 6 6.8265 0.2291 1.8432 11 8 6.5205 1.3563 2.1737 12 7 8.1078 -0.1776 1.9413 13 6 9.0983 0.7238 2.3402 14 6 10.3766 0.6347 1.8020 15 6 11.3530 1.5282 2.1920 16 6 11.0614 2.5099 3.1309 17 8 12.0236 3.3858 3.5180 18 6 11.7085 4.2418 4.5106 19 1 10.7030 4.2656 4.9043 20 6 12.6752 5.0915 5.0263 21 7 13.8999 5.0628 4.5465 22 14 12.2387 6.2771 6.4022 23 1 11.7666 5.5117 7.5840 24 1 13.4388 7.0694 6.7723 25 1 11.1634 7.1931 5.9439 26 6 9.7851 2.5956 3.6733 27 6 8.8069 1.7061 3.2794 28 6 3.3839 -1.1242 -0.8137 29 8 2.0383 -0.7335 -1.1349 30 1 -0.3633 -1.0274 0.0255 31 1 -0.3633 0.5358 0.8770 32 1 -0.3634 0.4915 -0.9024 33 1 1.4565 -1.6658 1.4256 34 1 2.1523 -0.1544 2.0986 35 1 4.2580 0.6006 1.4932 36 1 8.3416 -1.0970 1.7390 37 1 10.6047 -0.1314 1.0757 38 1 12.3452 1.4617 1.7705 39 1 14.5760 5.6575 4.9070 40 1 9.5590 3.3587 4.4034 41 1 7.8148 1.7730 3.7008 42 1 4.0853 -0.3763 -1.1838 43 1 3.6070 -2.0938 -1.2589 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326088106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:48 Heat of formation + Delta-G solvation = -129.544195 kcal Electronic energy + Delta-G solvation = -27410.646669 eV Core-core repulsion = 23228.168294 eV Total energy + Delta-G solvation = -4182.478375 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19079 -41.10905 -40.44442 -39.54705 -38.22675 -36.20364 -35.28124 -34.17543 -33.06217 -31.92292 -31.30616 -29.88580 -27.44813 -27.06837 -26.02816 -24.01864 -23.18012 -22.47300 -22.03493 -21.47003 -20.28528 -19.64028 -18.87544 -18.47459 -17.79090 -17.42275 -17.06365 -16.64677 -16.37435 -16.30594 -16.15952 -15.93756 -15.53337 -15.42361 -15.17044 -15.02872 -14.66858 -14.19193 -14.02790 -13.65183 -13.57828 -13.39629 -13.29306 -13.23344 -13.01195 -12.79817 -12.69916 -12.64932 -12.45092 -12.23809 -12.15044 -11.77596 -11.47195 -11.14024 -10.79076 -10.72757 -10.59094 -10.45069 -9.88102 -8.70809 -8.47351 -6.14214 0.01996 0.50742 0.67374 1.16173 1.36219 1.46209 1.51927 2.01385 2.18008 2.47154 2.78931 2.85390 3.12598 3.26515 3.39482 3.48761 3.66416 3.85112 4.05768 4.07791 4.08187 4.15183 4.40486 4.44808 4.56815 4.62046 4.63918 4.64480 4.70999 4.85069 4.92450 5.04163 5.06640 5.07458 5.13211 5.26687 5.29910 5.34249 5.48954 5.66285 5.81370 5.85929 6.00907 6.07966 6.26317 6.63393 6.84517 6.97152 7.75164 8.74840 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.021731 B = 0.001995 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.202061 B =14034.800754 C =14953.894786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.074 0.926 4 C -0.148 4.148 5 C 0.109 3.891 6 H 0.112 0.888 7 N -0.682 5.682 8 C 0.524 3.476 9 O -0.530 6.530 10 C 0.499 3.501 11 O -0.529 6.529 12 N -0.618 5.618 13 C 0.048 3.952 14 C -0.071 4.071 15 C -0.180 4.180 16 C 0.113 3.887 17 O -0.224 6.224 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.021 4.021 21 N -0.916 5.916 22 Si 1.017 2.983 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.259 1.259 26 C -0.228 4.228 27 C -0.067 4.067 28 C 0.037 3.963 29 O -0.391 6.391 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.421 0.579 36 H 0.429 0.571 37 H 0.164 0.836 38 H 0.130 0.870 39 H 0.273 0.727 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.055 0.945 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.383 -13.427 -6.290 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.091 0.909 4 C -0.185 4.185 5 C 0.005 3.995 6 H 0.130 0.870 7 N -0.336 5.336 8 C 0.304 3.696 9 O -0.407 6.407 10 C 0.281 3.719 11 O -0.405 6.405 12 N -0.265 5.265 13 C -0.045 4.045 14 C -0.090 4.090 15 C -0.200 4.200 16 C 0.061 3.939 17 O -0.130 6.130 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.219 4.219 21 N -0.554 5.554 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.196 1.196 25 H -0.183 1.183 26 C -0.248 4.248 27 C -0.087 4.087 28 C -0.041 4.041 29 O -0.310 6.310 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.259 0.741 36 H 0.269 0.731 37 H 0.182 0.818 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.152 0.848 42 H 0.074 0.926 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -25.120 -13.375 -6.575 29.209 hybrid contribution 0.531 0.823 0.659 1.180 sum -24.590 -12.553 -5.916 28.235 Atomic orbital electron populations 1.21792 0.91654 1.03409 1.03332 1.23478 0.96568 0.95397 0.84308 0.90851 1.23581 0.93032 1.02743 0.99174 1.22554 0.87950 0.95352 0.93670 0.87003 1.45831 1.05964 1.18253 1.63543 1.19710 0.84058 0.86774 0.79084 1.90777 1.81233 1.20016 1.48666 1.20404 0.84150 0.87615 0.79734 1.90786 1.81018 1.20796 1.47924 1.42776 1.05175 1.14297 1.64269 1.17350 0.89355 0.96824 1.00983 1.20779 0.90470 0.98984 0.98807 1.20307 1.01175 0.96747 1.01784 1.19979 0.88967 0.90287 0.94624 1.83933 1.37082 1.42200 1.49816 1.21763 0.98460 1.15713 1.13104 0.88176 1.26558 0.94321 0.99769 1.01216 1.70168 1.03356 1.38840 1.43034 0.84673 0.78279 0.76974 0.76482 1.18180 1.19565 1.18315 1.21115 0.93203 1.04098 1.06382 1.20940 0.98810 0.94145 0.94824 1.23626 0.84501 1.01491 0.94471 1.88920 1.27725 1.74061 1.40323 0.91485 0.89135 0.92268 0.87122 0.87502 0.74124 0.73113 0.81831 0.85222 0.91767 0.85955 0.84791 0.92643 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.66 71.98 0.70 -0.44 16 2 C 0.06 0.64 3.98 31.40 0.13 0.76 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.15 -1.13 6.24 32.02 0.20 -0.93 16 5 C 0.11 1.33 3.36 45.98 0.15 1.49 16 6 H 0.11 1.42 7.61 -2.39 -0.02 1.40 16 7 N -0.68 -10.23 4.99 -439.33 -2.19 -12.42 16 8 C 0.52 10.70 7.88 87.23 0.69 11.39 16 9 O -0.53 -12.26 16.16 -3.27 -0.05 -12.31 16 10 C 0.50 12.54 7.72 87.23 0.67 13.21 16 11 O -0.53 -15.91 13.92 -3.37 -0.05 -15.96 16 12 N -0.62 -15.45 5.32 -304.74 -1.62 -17.07 16 13 C 0.05 1.54 6.30 38.24 0.24 1.78 16 14 C -0.07 -2.22 9.96 22.39 0.22 -2.00 16 15 C -0.18 -7.24 9.98 22.37 0.22 -7.02 16 16 C 0.11 5.49 6.65 22.61 0.15 5.64 16 17 O -0.22 -13.23 9.75 -22.44 -0.22 -13.45 16 18 C -0.41 -23.88 9.48 67.92 0.64 -23.24 16 19 H 0.10 5.33 5.19 -2.91 -0.02 5.31 16 20 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 21 N -0.92 -55.47 13.67 21.61 0.30 -55.17 16 22 Si 1.02 42.52 29.55 68.60 2.03 44.55 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 26 C -0.23 -10.11 9.16 22.37 0.20 -9.91 16 27 C -0.07 -2.52 8.68 22.39 0.19 -2.33 16 28 C 0.04 0.55 7.50 72.35 0.54 1.09 16 29 O -0.39 -6.48 11.22 -148.98 -1.67 -8.15 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.60 8.06 -2.39 -0.02 0.58 16 34 H 0.11 0.55 7.98 -2.38 -0.02 0.53 16 35 H 0.42 5.57 8.03 -92.71 -0.74 4.82 16 36 H 0.43 8.46 8.30 -92.71 -0.77 7.69 16 37 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 40 H 0.12 5.54 5.63 -2.91 -0.02 5.52 16 41 H 0.13 4.78 6.23 -2.91 -0.02 4.76 16 42 H 0.06 0.93 7.93 -2.39 -0.02 0.91 16 43 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -73.74 368.07 1.51 -72.23 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.43 Total: 28.94 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.43 Total: -11.19 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.52 Total: -84.66 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.99 Total: -49.87 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.74 1.51 -72.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.317 kcal (2) G-P(sol) polarization free energy of solvation -73.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds