Wall clock time and date at job start Tue Mar 31 2020 18:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.42406 * 2 1 4 4 C 1.54474 * 110.37511 * 237.68864 * 2 1 3 5 5 C 1.54504 * 104.06629 * 217.19563 * 4 2 1 6 6 H 1.09003 * 110.63281 * 118.70276 * 5 4 2 7 7 N 1.46504 * 110.51357 * 241.35623 * 5 4 2 8 8 C 1.34778 * 120.00309 * 201.09462 * 7 5 4 9 9 O 1.21366 * 119.99548 * 359.97438 * 8 7 5 10 10 C 1.49312 * 120.00033 * 179.97438 * 8 7 5 11 11 O 1.21393 * 120.00053 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00033 * 179.97438 * 10 8 7 13 13 C 1.39743 * 119.99925 * 175.49599 * 12 10 8 14 14 C 1.38992 * 120.00854 * 35.13906 * 13 12 10 15 15 C 1.37971 * 119.99269 * 180.02562 * 14 13 12 16 16 C 1.38931 * 120.00729 * 359.97438 * 15 14 13 17 17 O 1.35756 * 119.99293 * 179.97438 * 16 15 14 18 18 C 1.34798 * 116.99923 * 5.34654 * 17 16 15 19 19 H 1.07996 * 120.00493 * 354.96617 * 18 17 16 20 20 C 1.38650 * 120.00118 * 174.68373 * 18 17 16 21 21 N 1.31570 * 119.99984 * 0.27978 * 20 18 17 22 22 Si 1.86799 * 120.00361 * 180.27579 * 20 18 17 23 23 H 1.48492 * 109.47251 * 90.00221 * 22 20 18 24 24 H 1.48504 * 109.47054 * 210.00474 * 22 20 18 25 25 H 1.48499 * 109.46818 * 330.00084 * 22 20 18 26 26 C 1.38941 * 120.01448 * 0.27300 * 16 15 14 27 27 C 1.37971 * 120.00403 * 359.49196 * 26 16 15 28 28 C 1.54482 * 104.06330 * 359.97438 * 5 4 2 29 29 O 1.44426 * 104.80122 * 23.98268 * 28 5 4 30 30 H 1.08998 * 109.47586 * 299.14793 * 1 2 3 31 31 H 1.09009 * 109.46646 * 59.14411 * 1 2 3 32 32 H 1.09001 * 109.47441 * 179.14311 * 1 2 3 33 33 H 1.09001 * 110.51256 * 98.54939 * 4 2 1 34 34 H 1.09009 * 110.51218 * 335.83673 * 4 2 1 35 35 H 0.97000 * 119.99815 * 21.08993 * 7 5 4 36 36 H 0.96996 * 120.00132 * 355.49764 * 12 10 8 37 37 H 1.08003 * 120.00460 * 0.04760 * 14 13 12 38 38 H 1.08001 * 119.99491 * 180.02562 * 15 14 13 39 39 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.99584 * 179.72311 * 26 16 15 41 41 H 1.08003 * 119.99801 * 180.25479 * 27 26 16 42 42 H 1.09005 * 110.36955 * 142.80798 * 28 5 4 43 43 H 1.09000 * 110.37531 * 265.03946 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3177 -1.5058 -0.6858 6 1 3.1979 -2.5857 -0.7731 7 7 4.5182 -1.0644 -1.4001 8 6 5.6206 -1.8397 -1.4085 9 8 5.6189 -2.9033 -0.8239 10 6 6.8439 -1.3901 -2.1371 11 8 6.8454 -0.3265 -2.7222 12 7 7.9466 -2.1651 -2.1451 13 6 9.0587 -1.7902 -2.9036 14 6 9.3853 -0.4462 -3.0409 15 6 10.4831 -0.0763 -3.7903 16 6 11.2624 -1.0471 -4.4072 17 8 12.3422 -0.6828 -5.1449 18 6 12.6680 0.6252 -5.1482 19 1 12.0331 1.3412 -4.6476 20 6 13.8214 1.0508 -5.7893 21 7 14.5950 0.1786 -6.3992 22 14 14.2769 2.8624 -5.7874 23 1 15.1232 3.1587 -4.6037 24 1 15.0288 3.1851 -7.0267 25 1 13.0409 3.6835 -5.7303 26 6 10.9332 -2.3904 -4.2743 27 6 9.8383 -2.7612 -3.5211 28 6 3.3876 -1.0867 0.7995 29 8 2.0331 -0.7230 1.1444 30 1 -0.3634 0.5005 0.8975 31 1 -0.3633 0.5271 -0.8823 32 1 -0.3634 -1.0275 -0.0154 33 1 2.3430 -0.0839 -2.0214 34 1 1.3275 -1.4920 -1.5772 35 1 4.5196 -0.2142 -1.8671 36 1 7.9681 -2.9832 -1.6244 37 1 8.7801 0.3085 -2.5608 38 1 10.7372 0.9680 -3.8967 39 1 15.4017 0.4764 -6.8480 40 1 11.5365 -3.1445 -4.7577 41 1 9.5849 -3.8056 -3.4145 42 1 3.7243 -1.9218 1.4138 43 1 4.0544 -0.2333 0.9220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326088108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:55 Heat of formation + Delta-G solvation = -105.534004 kcal Electronic energy + Delta-G solvation = -27340.116732 eV Core-core repulsion = 23158.679517 eV Total energy + Delta-G solvation = -4181.437215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13195 -40.11365 -39.12466 -38.36909 -36.66926 -35.31803 -33.98634 -32.60570 -32.24894 -30.58543 -30.28760 -28.36823 -26.51862 -25.63122 -24.77494 -22.60741 -22.19597 -21.57074 -21.22395 -20.29470 -18.96747 -17.99908 -17.55359 -17.17282 -16.67218 -16.28195 -16.18535 -15.91965 -15.58119 -15.21197 -14.59547 -14.50546 -14.33406 -13.99145 -13.69446 -13.67848 -13.59049 -13.09050 -12.97856 -12.72577 -12.64807 -12.52896 -12.12880 -11.95512 -11.82183 -11.66339 -11.63983 -11.42143 -11.29741 -11.07172 -10.80879 -10.47612 -10.32640 -9.83675 -9.73319 -9.62560 -9.26635 -8.77704 -8.29846 -7.05287 -6.50668 -4.08019 1.15312 2.04319 2.11512 2.28237 3.07493 3.11591 3.14511 3.16523 3.32925 3.59225 3.92106 3.93122 4.14713 4.31667 4.41465 4.50295 4.58207 4.67005 4.84911 5.03465 5.04414 5.14703 5.19060 5.24151 5.35443 5.40206 5.49597 5.59350 5.64324 5.65312 5.79274 5.99017 6.06996 6.19840 6.34492 6.57081 6.66338 6.81125 6.90344 6.97246 7.21154 7.35137 7.35482 7.59901 7.65954 7.94037 8.02185 8.94783 9.62895 10.66839 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.001945 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.938352 B =14395.361007 C =15273.241611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.159 4.159 5 C 0.111 3.889 6 H 0.108 0.892 7 N -0.696 5.696 8 C 0.514 3.486 9 O -0.518 6.518 10 C 0.495 3.505 11 O -0.509 6.509 12 N -0.622 5.622 13 C 0.020 3.980 14 C -0.059 4.059 15 C -0.222 4.222 16 C 0.150 3.850 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.178 4.178 27 C -0.084 4.084 28 C 0.035 3.965 29 O -0.367 6.367 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.414 0.586 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.271 0.729 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.658 -1.705 11.243 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.091 0.909 4 C -0.197 4.197 5 C 0.006 3.994 6 H 0.126 0.874 7 N -0.351 5.351 8 C 0.295 3.705 9 O -0.393 6.393 10 C 0.277 3.723 11 O -0.384 6.384 12 N -0.267 5.267 13 C -0.072 4.072 14 C -0.079 4.079 15 C -0.242 4.242 16 C 0.096 3.904 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.198 4.198 27 C -0.104 4.104 28 C -0.043 4.043 29 O -0.285 6.285 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.253 0.747 36 H 0.250 0.750 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.081 0.919 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.120 0.880 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.424 -1.895 11.158 26.015 hybrid contribution 0.371 0.946 -0.169 1.030 sum -23.053 -0.950 10.988 25.556 Atomic orbital electron populations 1.21814 0.92762 1.03132 1.02755 1.23020 0.95732 0.95602 0.84604 0.90910 1.23324 0.96852 1.00488 0.99056 1.22467 0.83659 1.01397 0.91846 0.87377 1.45823 1.11824 1.23872 1.53607 1.20257 0.84655 0.84556 0.81033 1.90769 1.83260 1.22018 1.43261 1.19943 0.84158 0.85688 0.82559 1.90783 1.82991 1.21461 1.43203 1.42832 1.11949 1.26070 1.45862 1.17231 0.91744 0.93921 1.04333 1.20832 0.95442 0.94137 0.97509 1.21090 0.98032 1.00337 1.04769 1.19450 0.88220 0.92870 0.89898 1.83966 1.38357 1.28142 1.57061 1.21359 1.08348 0.80562 1.36497 0.88897 1.25316 0.94848 1.00399 0.95943 1.70041 1.13267 1.34315 1.31771 0.85693 0.79098 0.80340 0.78230 1.19815 1.20217 1.19107 1.20007 1.00365 0.93826 1.05555 1.20392 0.95425 0.97576 0.96989 1.23863 0.84810 1.00932 0.94686 1.89192 1.26756 1.74523 1.38061 0.91619 0.90921 0.91604 0.89275 0.88956 0.74746 0.74951 0.85675 0.85020 0.91917 0.85812 0.86406 0.88007 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.52 37.16 0.35 -0.37 16 2 C 0.07 0.42 3.92 -25.96 -0.10 0.32 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.16 -0.87 6.39 -25.17 -0.16 -1.03 16 5 C 0.11 0.84 3.42 -66.36 -0.23 0.62 16 6 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 7 N -0.70 -6.12 5.11 -52.76 -0.27 -6.39 16 8 C 0.51 5.97 7.88 -11.65 -0.09 5.88 16 9 O -0.52 -6.78 16.19 5.48 0.09 -6.69 16 10 C 0.50 6.90 7.73 -11.65 -0.09 6.81 16 11 O -0.51 -8.21 13.91 5.46 0.08 -8.13 16 12 N -0.62 -8.78 5.32 -10.27 -0.05 -8.83 16 13 C 0.02 0.34 6.30 -83.69 -0.53 -0.18 16 14 C -0.06 -1.15 8.68 -39.40 -0.34 -1.49 16 15 C -0.22 -4.84 9.16 -39.42 -0.36 -5.20 16 16 C 0.15 3.55 6.65 -39.06 -0.26 3.29 16 17 O -0.17 -4.81 9.75 0.12 0.00 -4.81 16 18 C -0.39 -10.75 9.48 30.88 0.29 -10.46 16 19 H 0.09 2.36 5.19 -52.49 -0.27 2.09 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.75 13.67 55.48 0.76 -24.00 16 22 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.18 -3.59 9.98 -39.42 -0.39 -3.99 16 27 C -0.08 -1.43 9.96 -39.40 -0.39 -1.82 16 28 C 0.04 0.29 7.35 37.94 0.28 0.56 16 29 O -0.37 -3.26 11.34 -35.23 -0.40 -3.66 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.25 8.14 -51.92 -0.42 -0.18 16 32 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.09 0.40 7.65 -51.93 -0.40 0.00 16 34 H 0.09 0.43 7.86 -51.92 -0.41 0.03 16 35 H 0.42 3.23 7.78 -40.82 -0.32 2.91 16 36 H 0.41 4.89 8.30 -40.82 -0.34 4.55 16 37 H 0.13 2.32 6.23 -52.48 -0.33 2.00 16 38 H 0.13 2.87 5.63 -52.49 -0.30 2.57 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -32.27 367.58 -6.67 -38.94 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.27 Total: 8.91 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.12 Total: -6.08 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.43 Total: -39.22 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.23 Total: -23.29 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.27 -6.67 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.597 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds