Wall clock time and date at job start Tue Mar 31 2020 18:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.42406 * 2 1 4 4 C 1.54474 * 110.37511 * 237.68864 * 2 1 3 5 5 C 1.54504 * 104.06629 * 217.19563 * 4 2 1 6 6 H 1.09003 * 110.63281 * 118.70276 * 5 4 2 7 7 N 1.46504 * 110.51357 * 241.35623 * 5 4 2 8 8 C 1.34778 * 120.00309 * 201.09462 * 7 5 4 9 9 O 1.21366 * 119.99548 * 359.97438 * 8 7 5 10 10 C 1.49312 * 120.00033 * 179.97438 * 8 7 5 11 11 O 1.21393 * 120.00053 * 359.97438 * 10 8 7 12 12 N 1.34778 * 120.00033 * 179.97438 * 10 8 7 13 13 C 1.39743 * 119.99925 * 175.49599 * 12 10 8 14 14 C 1.38992 * 120.00854 * 35.13906 * 13 12 10 15 15 C 1.37971 * 119.99269 * 180.02562 * 14 13 12 16 16 C 1.38931 * 120.00729 * 359.97438 * 15 14 13 17 17 O 1.35756 * 119.99293 * 179.97438 * 16 15 14 18 18 C 1.34798 * 116.99923 * 5.34654 * 17 16 15 19 19 H 1.07996 * 120.00493 * 354.96617 * 18 17 16 20 20 C 1.38650 * 120.00118 * 174.68373 * 18 17 16 21 21 N 1.31570 * 119.99984 * 0.27978 * 20 18 17 22 22 Si 1.86799 * 120.00361 * 180.27579 * 20 18 17 23 23 H 1.48492 * 109.47251 * 90.00221 * 22 20 18 24 24 H 1.48504 * 109.47054 * 210.00474 * 22 20 18 25 25 H 1.48499 * 109.46818 * 330.00084 * 22 20 18 26 26 C 1.38941 * 120.01448 * 0.27300 * 16 15 14 27 27 C 1.37971 * 120.00403 * 359.49196 * 26 16 15 28 28 C 1.54482 * 104.06330 * 359.97438 * 5 4 2 29 29 O 1.44426 * 104.80122 * 23.98268 * 28 5 4 30 30 H 1.08998 * 109.47586 * 299.14793 * 1 2 3 31 31 H 1.09009 * 109.46646 * 59.14411 * 1 2 3 32 32 H 1.09001 * 109.47441 * 179.14311 * 1 2 3 33 33 H 1.09001 * 110.51256 * 98.54939 * 4 2 1 34 34 H 1.09009 * 110.51218 * 335.83673 * 4 2 1 35 35 H 0.97000 * 119.99815 * 21.08993 * 7 5 4 36 36 H 0.96996 * 120.00132 * 355.49764 * 12 10 8 37 37 H 1.08003 * 120.00460 * 0.04760 * 14 13 12 38 38 H 1.08001 * 119.99491 * 180.02562 * 15 14 13 39 39 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 40 40 H 1.08001 * 119.99584 * 179.72311 * 26 16 15 41 41 H 1.08003 * 119.99801 * 180.25479 * 27 26 16 42 42 H 1.09005 * 110.36955 * 142.80798 * 28 5 4 43 43 H 1.09000 * 110.37531 * 265.03946 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0678 -0.7740 -1.2239 5 6 3.3177 -1.5058 -0.6858 6 1 3.1979 -2.5857 -0.7731 7 7 4.5182 -1.0644 -1.4001 8 6 5.6206 -1.8397 -1.4085 9 8 5.6189 -2.9033 -0.8239 10 6 6.8439 -1.3901 -2.1371 11 8 6.8454 -0.3265 -2.7222 12 7 7.9466 -2.1651 -2.1451 13 6 9.0587 -1.7902 -2.9036 14 6 9.3853 -0.4462 -3.0409 15 6 10.4831 -0.0763 -3.7903 16 6 11.2624 -1.0471 -4.4072 17 8 12.3422 -0.6828 -5.1449 18 6 12.6680 0.6252 -5.1482 19 1 12.0331 1.3412 -4.6476 20 6 13.8214 1.0508 -5.7893 21 7 14.5950 0.1786 -6.3992 22 14 14.2769 2.8624 -5.7874 23 1 15.1232 3.1587 -4.6037 24 1 15.0288 3.1851 -7.0267 25 1 13.0409 3.6835 -5.7303 26 6 10.9332 -2.3904 -4.2743 27 6 9.8383 -2.7612 -3.5211 28 6 3.3876 -1.0867 0.7995 29 8 2.0331 -0.7230 1.1444 30 1 -0.3634 0.5005 0.8975 31 1 -0.3633 0.5271 -0.8823 32 1 -0.3634 -1.0275 -0.0154 33 1 2.3430 -0.0839 -2.0214 34 1 1.3275 -1.4920 -1.5772 35 1 4.5196 -0.2142 -1.8671 36 1 7.9681 -2.9832 -1.6244 37 1 8.7801 0.3085 -2.5608 38 1 10.7372 0.9680 -3.8967 39 1 15.4017 0.4764 -6.8480 40 1 11.5365 -3.1445 -4.7577 41 1 9.5849 -3.8056 -3.4145 42 1 3.7243 -1.9218 1.4138 43 1 4.0544 -0.2333 0.9220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326088108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:54 Heat of formation + Delta-G solvation = -129.519492 kcal Electronic energy + Delta-G solvation = -27341.156821 eV Core-core repulsion = 23158.679517 eV Total energy + Delta-G solvation = -4182.477304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17808 -41.09451 -40.45044 -39.56479 -38.22330 -36.24490 -35.29317 -34.17391 -33.09592 -31.91999 -31.24819 -29.87917 -27.44938 -27.00545 -26.02246 -24.02251 -23.26814 -22.54870 -21.95743 -21.45741 -20.28103 -19.64025 -18.87775 -18.45407 -17.74892 -17.33367 -17.13444 -16.61208 -16.49668 -16.26095 -16.15470 -15.81952 -15.54810 -15.43228 -15.22132 -14.94305 -14.68547 -14.34068 -14.17290 -13.59330 -13.56001 -13.40420 -13.27334 -13.18010 -13.03370 -12.78866 -12.70510 -12.64884 -12.44756 -12.12659 -12.12023 -11.81572 -11.46418 -11.14524 -10.90494 -10.76662 -10.58484 -10.38837 -9.87834 -8.70596 -8.47561 -6.14291 0.02410 0.50975 0.67261 1.16220 1.36278 1.44767 1.53145 2.01722 2.17781 2.45447 2.79127 2.92842 3.12590 3.27284 3.41822 3.48951 3.64043 3.87738 4.05495 4.06135 4.08382 4.14990 4.41632 4.45069 4.57225 4.57550 4.64239 4.67193 4.69153 4.81803 4.92223 5.04500 5.06490 5.07249 5.12131 5.26972 5.29486 5.34393 5.49233 5.66526 5.78266 5.84072 6.01095 6.08268 6.26853 6.64157 6.84930 6.97205 7.75254 8.74884 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.023136 B = 0.001945 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.938352 B =14395.361007 C =15273.241611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.061 3.939 3 H 0.078 0.922 4 C -0.151 4.151 5 C 0.111 3.889 6 H 0.104 0.896 7 N -0.679 5.679 8 C 0.523 3.477 9 O -0.531 6.531 10 C 0.500 3.500 11 O -0.528 6.528 12 N -0.618 5.618 13 C 0.048 3.952 14 C -0.068 4.068 15 C -0.228 4.228 16 C 0.113 3.887 17 O -0.224 6.224 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.020 4.020 21 N -0.916 5.916 22 Si 1.017 2.983 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.255 1.255 26 C -0.180 4.180 27 C -0.071 4.071 28 C 0.035 3.965 29 O -0.387 6.387 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.422 0.578 36 H 0.429 0.571 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.273 0.727 40 H 0.130 0.870 41 H 0.164 0.836 42 H 0.097 0.903 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.499 -1.700 12.411 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.004 3.996 3 H 0.096 0.904 4 C -0.189 4.189 5 C 0.007 3.993 6 H 0.122 0.878 7 N -0.334 5.334 8 C 0.303 3.697 9 O -0.408 6.408 10 C 0.282 3.718 11 O -0.405 6.405 12 N -0.265 5.265 13 C -0.045 4.045 14 C -0.087 4.087 15 C -0.248 4.248 16 C 0.061 3.939 17 O -0.131 6.131 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.218 4.218 21 N -0.554 5.554 22 Si 0.836 3.164 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.178 1.178 26 C -0.200 4.200 27 C -0.090 4.090 28 C -0.043 4.043 29 O -0.306 6.306 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.261 0.739 36 H 0.269 0.731 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.182 0.818 42 H 0.115 0.885 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.353 -1.906 12.374 29.176 hybrid contribution 0.869 0.780 -0.319 1.211 sum -25.483 -1.126 12.055 28.213 Atomic orbital electron populations 1.21834 0.91789 1.03272 1.03423 1.23228 0.96583 0.95722 0.84061 0.90359 1.23326 0.95832 1.00721 0.99014 1.22554 0.83724 1.01433 0.91599 0.87812 1.45800 1.11320 1.23580 1.52733 1.19732 0.84412 0.84630 0.80932 1.90783 1.83332 1.22633 1.44027 1.20382 0.84669 0.84951 0.81832 1.90787 1.83452 1.22373 1.43865 1.42775 1.11136 1.26845 1.45775 1.17351 0.91665 0.93201 1.02264 1.20943 0.94816 0.95560 0.97416 1.21110 0.98721 0.99747 1.05220 1.19979 0.88122 0.94701 0.91049 1.83936 1.40769 1.28350 1.59995 1.21798 1.09052 0.81103 1.37012 0.88182 1.26550 0.94456 1.05516 0.95317 1.70175 1.14325 1.36827 1.34074 0.84611 0.79131 0.74072 0.78586 1.18805 1.19533 1.17841 1.20308 1.01279 0.92667 1.05718 1.20783 0.93572 0.99830 0.94838 1.23825 0.84783 1.00776 0.94880 1.89182 1.26963 1.74974 1.39469 0.92087 0.89121 0.91760 0.87785 0.87796 0.73929 0.73123 0.84809 0.86006 0.91775 0.85206 0.81808 0.88508 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.52 71.98 0.69 -0.42 16 2 C 0.06 0.62 3.92 31.09 0.12 0.75 16 3 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.15 -1.21 6.39 31.61 0.20 -1.01 16 5 C 0.11 1.41 3.42 46.01 0.16 1.57 16 6 H 0.10 1.48 7.67 -2.39 -0.02 1.46 16 7 N -0.68 -10.07 5.11 -439.18 -2.24 -12.31 16 8 C 0.52 10.67 7.88 87.23 0.69 11.36 16 9 O -0.53 -12.41 16.19 -3.30 -0.05 -12.46 16 10 C 0.50 12.47 7.73 87.23 0.67 13.15 16 11 O -0.53 -15.76 13.91 -3.38 -0.05 -15.80 16 12 N -0.62 -15.40 5.32 -304.75 -1.62 -17.02 16 13 C 0.05 1.55 6.30 38.24 0.24 1.79 16 14 C -0.07 -2.52 8.68 22.39 0.19 -2.33 16 15 C -0.23 -10.10 9.16 22.37 0.20 -9.90 16 16 C 0.11 5.48 6.65 22.60 0.15 5.63 16 17 O -0.22 -13.22 9.75 -22.48 -0.22 -13.44 16 18 C -0.41 -23.82 9.48 67.92 0.64 -23.18 16 19 H 0.10 5.33 5.19 -2.91 -0.02 5.32 16 20 C -0.02 -1.14 5.49 84.83 0.47 -0.68 16 21 N -0.92 -55.40 13.67 21.61 0.30 -55.11 16 22 Si 1.02 42.55 29.55 68.60 2.03 44.58 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 26 C -0.18 -7.20 9.98 22.37 0.22 -6.97 16 27 C -0.07 -2.21 9.96 22.39 0.22 -1.98 16 28 C 0.04 0.52 7.35 72.49 0.53 1.05 16 29 O -0.39 -6.28 11.34 -148.98 -1.69 -7.97 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 33 H 0.10 0.55 7.65 -2.39 -0.02 0.54 16 34 H 0.10 0.64 7.86 -2.38 -0.02 0.62 16 35 H 0.42 5.32 7.78 -92.71 -0.72 4.60 16 36 H 0.43 8.45 8.30 -92.71 -0.77 7.68 16 37 H 0.13 4.78 6.23 -2.91 -0.02 4.76 16 38 H 0.12 5.52 5.63 -2.91 -0.02 5.51 16 39 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 41 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.07 0.96 8.06 -2.39 -0.02 0.94 16 Total: -1.00 -73.54 367.58 1.45 -72.09 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.41 Total: 28.62 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 5.41 Total: -11.18 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -3.57 Total: -84.44 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -2.01 Total: -49.67 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -73.54 1.45 -72.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326088108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.433 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds