Wall clock time and date at job start Tue Mar 31 2020 18:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00188 * 2 1 4 4 O 1.20827 * 120.00171 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99872 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.82412 * 304.10852 * 5 3 2 7 7 O 1.43241 * 109.82873 * 183.13193 * 5 3 2 8 8 C 1.43641 * 109.97500 * 242.19708 * 7 5 3 9 9 H 1.09001 * 110.31254 * 94.48213 * 8 7 5 10 10 C 1.50695 * 110.31425 * 216.55722 * 8 7 5 11 11 O 1.21276 * 119.99834 * 3.54846 * 10 8 7 12 12 N 1.34780 * 120.00183 * 183.54285 * 10 8 7 13 13 C 1.39468 * 119.99817 * 175.16167 * 12 10 8 14 14 C 1.38597 * 119.57683 * 185.26426 * 13 12 10 15 15 C 1.40813 * 118.79149 * 179.76169 * 14 13 12 16 16 C 1.41548 * 120.99242 * 180.21341 * 15 14 13 17 17 H 1.07991 * 120.00403 * 329.74779 * 16 15 14 18 18 C 1.40039 * 119.99552 * 149.75311 * 16 15 14 19 19 N 1.30747 * 119.99517 * 167.68011 * 18 16 15 20 20 Si 1.86791 * 120.00273 * 347.67218 * 18 16 15 21 21 H 1.48502 * 109.47273 * 92.45343 * 20 18 16 22 22 H 1.48504 * 109.47567 * 212.45314 * 20 18 16 23 23 H 1.48501 * 109.47316 * 332.45694 * 20 18 16 24 24 C 1.41174 * 118.01114 * 0.49388 * 15 14 13 25 25 C 1.37591 * 119.00957 * 359.74362 * 24 15 14 26 26 N 1.32076 * 121.11482 * 0.02562 * 25 24 15 27 27 C 1.54946 * 105.13440 * 335.57373 * 8 7 5 28 28 C 1.54380 * 109.83360 * 64.99928 * 5 3 2 29 29 H 1.08998 * 110.84296 * 22.67754 * 28 5 3 30 30 C 1.52998 * 110.84638 * 259.26070 * 28 5 3 31 31 H 1.09004 * 109.46854 * 60.00222 * 1 2 3 32 32 H 1.09001 * 109.46733 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47042 * 300.00433 * 1 2 3 34 34 H 0.96997 * 119.99669 * 355.15952 * 12 10 8 35 35 H 1.07999 * 120.60683 * 359.97438 * 14 13 12 36 36 H 0.96995 * 119.99729 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.49724 * 179.71531 * 24 15 14 38 38 H 1.08005 * 119.44099 * 179.97438 * 25 24 15 39 39 H 1.09005 * 111.12362 * 278.52455 * 27 8 7 40 40 H 1.08998 * 111.13163 * 154.36451 * 27 8 7 41 41 H 1.09001 * 109.46969 * 62.77070 * 30 28 5 42 42 H 1.09003 * 109.46999 * 182.77072 * 30 28 5 43 43 H 1.08993 * 109.47357 * 302.77044 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9659 0.7197 0.8481 7 8 3.9813 2.6438 0.0731 8 6 4.7222 2.9961 -1.1059 9 1 4.0627 3.4496 -1.8458 10 6 5.8431 3.9409 -0.7566 11 8 6.0457 4.2395 0.4013 12 7 6.6204 4.4539 -1.7308 13 6 7.5917 5.4051 -1.4196 14 6 8.3111 6.0074 -2.4398 15 6 9.2842 6.9692 -2.1071 16 6 10.0426 7.6164 -3.1119 17 1 10.2665 7.1024 -4.0348 18 6 10.5027 8.9234 -2.9089 19 7 11.3953 9.4348 -3.7159 20 14 9.8410 9.9361 -1.4857 21 1 10.7224 9.7631 -0.3031 22 1 9.8067 11.3697 -1.8719 23 1 8.4679 9.4808 -1.1503 24 6 9.4851 7.2642 -0.7412 25 6 8.7255 6.6103 0.2014 26 7 7.8188 5.7174 -0.1524 27 6 5.2911 1.6579 -1.6412 28 6 4.1210 0.6895 -1.3171 29 1 3.3657 0.7172 -2.1024 30 6 4.6318 -0.7372 -1.1061 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 6.5042 4.1615 -2.6483 35 1 8.1262 5.7463 -3.4713 36 1 11.7137 10.3402 -3.5756 37 1 10.2244 7.9919 -0.4406 38 1 8.8737 6.8303 1.2483 39 1 6.1965 1.3735 -1.1049 40 1 5.4725 1.7095 -2.7147 41 1 3.8034 -1.3790 -0.8061 42 1 5.0622 -1.1102 -2.0355 43 1 5.3935 -0.7389 -0.3265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361537918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:53 Heat of formation + Delta-G solvation = -119.967621 kcal Electronic energy + Delta-G solvation = -28236.615923 eV Core-core repulsion = 24054.552819 eV Total energy + Delta-G solvation = -4182.063104 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28256 -40.14116 -39.13747 -37.76404 -36.67298 -34.62631 -34.04658 -33.68670 -31.44395 -31.16365 -29.06602 -28.37605 -26.94922 -26.03274 -24.74711 -22.16290 -21.92782 -21.72278 -20.94247 -19.63001 -18.46724 -18.18792 -17.31237 -17.20087 -16.72260 -16.53689 -15.98484 -15.49990 -15.44182 -14.88566 -14.45830 -14.30374 -14.13370 -13.92710 -13.88381 -13.66408 -13.22310 -13.13259 -12.88397 -12.79191 -12.62187 -12.56717 -12.19300 -11.83349 -11.58503 -11.56833 -11.32400 -11.22738 -11.14708 -10.91610 -10.83705 -10.71221 -10.09904 -9.94943 -9.77770 -9.46088 -9.36637 -8.29505 -7.91830 -7.30114 -7.05766 -4.76306 1.84064 2.09517 2.21761 2.57653 2.93625 3.06383 3.15000 3.18510 3.29058 3.64526 3.87198 3.90636 4.20927 4.33841 4.54890 4.55901 4.59074 4.74353 4.76023 4.82250 4.90733 4.96689 5.14340 5.19724 5.25449 5.36320 5.42369 5.45950 5.65678 5.71130 5.79514 5.98443 6.23434 6.27362 6.38590 6.41309 6.51169 6.99424 7.04777 7.10409 7.43690 7.54862 7.69611 7.92838 8.18611 8.38232 8.56894 8.65467 9.39024 9.95512 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.029042 B = 0.002295 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.883673 B =12195.619422 C =12538.523729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.446 3.554 4 O -0.486 6.486 5 C 0.093 3.907 6 H 0.126 0.874 7 O -0.316 6.316 8 C 0.061 3.939 9 H 0.100 0.900 10 C 0.500 3.500 11 O -0.452 6.452 12 N -0.657 5.657 13 C 0.360 3.640 14 C -0.289 4.289 15 C 0.128 3.872 16 C -0.438 4.438 17 H 0.094 0.906 18 C 0.085 3.915 19 N -0.803 5.803 20 Si 0.917 3.083 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.244 1.244 24 C -0.299 4.299 25 C 0.138 3.862 26 N -0.555 5.555 27 C -0.142 4.142 28 C -0.109 4.109 29 H 0.093 0.907 30 C -0.143 4.143 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.408 0.592 35 H 0.110 0.890 36 H 0.288 0.712 37 H 0.110 0.890 38 H 0.130 0.870 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.091 -19.188 1.050 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.287 3.713 4 O -0.371 6.371 5 C 0.033 3.967 6 H 0.143 0.857 7 O -0.233 6.233 8 C 0.000 4.000 9 H 0.118 0.882 10 C 0.283 3.717 11 O -0.319 6.319 12 N -0.305 5.305 13 C 0.135 3.865 14 C -0.315 4.315 15 C 0.120 3.880 16 C -0.468 4.468 17 H 0.112 0.888 18 C -0.135 4.135 19 N -0.427 5.427 20 Si 0.744 3.256 21 H -0.194 1.194 22 H -0.219 1.219 23 H -0.168 1.168 24 C -0.323 4.323 25 C -0.015 4.015 26 N -0.274 5.274 27 C -0.180 4.180 28 C -0.128 4.128 29 H 0.112 0.888 30 C -0.201 4.201 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.243 0.757 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.628 -18.799 2.647 24.589 hybrid contribution 0.013 0.895 -0.834 1.224 sum -15.614 -17.903 1.812 23.825 Atomic orbital electron populations 1.23292 0.76138 1.03739 1.02723 1.86484 1.23514 1.33141 1.84319 1.24210 0.92275 0.81723 0.73093 1.90710 1.66658 1.36305 1.43422 1.22413 0.86747 0.85806 1.01700 0.85699 1.88689 1.71092 1.24418 1.39124 1.22995 0.92917 0.95873 0.88264 0.88202 1.20216 0.82925 0.82125 0.86439 1.90834 1.67236 1.55479 1.18316 1.43331 1.34838 1.41366 1.11007 1.18048 0.88682 0.89086 0.90695 1.21191 1.04308 1.08990 0.96980 1.17693 0.88570 0.89770 0.92006 1.19466 1.26065 0.98413 1.02880 0.88787 1.26178 0.91901 0.98585 0.96864 1.69603 1.21060 1.16615 1.35446 0.86245 0.82343 0.76890 0.80125 1.19358 1.21889 1.16769 1.21947 1.07125 1.08857 0.94325 1.21843 0.90300 0.91108 0.98251 1.67314 1.22582 1.20755 1.16785 1.23421 0.98977 0.92054 1.03557 1.22645 0.97815 0.97036 0.95275 0.88828 1.21762 1.01846 0.93533 1.02919 0.91854 0.87913 0.91796 0.75664 0.87148 0.90140 0.87288 0.85227 0.88649 0.88069 0.91194 0.91299 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.19 10.56 -39.25 -0.41 -3.61 16 3 C 0.45 5.13 7.14 36.01 0.26 5.39 16 4 O -0.49 -7.39 16.27 -25.41 -0.41 -7.81 16 5 C 0.09 0.98 3.67 -27.16 -0.10 0.88 16 6 H 0.13 1.11 7.81 -51.93 -0.41 0.70 16 7 O -0.32 -4.71 9.81 -64.45 -0.63 -5.34 16 8 C 0.06 0.77 3.86 -26.86 -0.10 0.66 16 9 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 10 C 0.50 8.72 7.14 -10.99 -0.08 8.64 16 11 O -0.45 -10.22 14.81 -13.76 -0.20 -10.42 16 12 N -0.66 -11.05 5.39 -11.49 -0.06 -11.12 16 13 C 0.36 7.88 7.41 -154.70 -1.15 6.73 16 14 C -0.29 -6.46 9.73 -38.48 -0.37 -6.84 16 15 C 0.13 3.18 5.16 -106.55 -0.55 2.63 16 16 C -0.44 -11.38 9.67 -37.65 -0.36 -11.74 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 18 C 0.09 2.16 5.48 -17.34 -0.10 2.06 16 19 N -0.80 -20.64 13.92 55.55 0.77 -19.87 16 20 Si 0.92 20.52 24.42 -169.99 -4.15 16.37 16 21 H -0.27 -5.78 6.67 56.52 0.38 -5.40 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.24 -5.72 6.66 56.52 0.38 -5.34 16 24 C -0.30 -7.19 7.11 -38.70 -0.28 -7.47 16 25 C 0.14 3.22 11.15 -17.68 -0.20 3.02 16 26 N -0.55 -13.42 7.85 -12.52 -0.10 -13.52 16 27 C -0.14 -1.19 6.03 -24.48 -0.15 -1.33 16 28 C -0.11 -0.80 3.10 -88.67 -0.27 -1.07 16 29 H 0.09 0.61 7.84 -51.93 -0.41 0.20 16 30 C -0.14 -0.77 9.15 37.16 0.34 -0.43 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 34 H 0.41 4.97 8.70 -40.82 -0.36 4.62 16 35 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.29 6.70 8.29 -40.82 -0.34 6.37 16 37 H 0.11 2.55 4.43 -52.49 -0.23 2.32 16 38 H 0.13 2.65 8.06 -52.48 -0.42 2.23 16 39 H 0.09 0.86 7.96 -51.93 -0.41 0.44 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -35.38 364.15 -7.41 -42.79 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -5.65 Total: 4.60 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.04 Total: 2.43 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.61 Total: -44.50 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -1.66 Total: -27.18 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.15 Total: 16.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.38 -7.41 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361537918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.179 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds